View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5419-Insertion-7 (Length: 385)
Name: NF5419-Insertion-7
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5419-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 39955020 - 39954823
Alignment:
| Q |
13 |
cactacctcattgcatatggtatctttctctttgagttcagccttttgcgcttcattctctttctcgagtcgttctatctcctccttcaacttcattagt |
112 |
Q |
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| T |
39955020 |
cactacctcattgcatatggtatctttctctttgagttcagccttttgcgcttcattctctttctcgagtcgttctatctcctccttcaacttcattagt |
39954921 |
T |
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| Q |
113 |
tcattactaatatcatctttgtgcttgagttcaagcttcagtgtttcattccctttcttgagttcatctgtttcttccctcagcttcattgcttcatt |
210 |
Q |
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| T |
39954920 |
tcattactaatatcatctttgtgcttcagttcaagcttcagtgtttcattccctttcttgagttcatctgtttcttccctcagcttcattacttcatt |
39954823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 203 - 385
Target Start/End: Complemental strand, 39954971 - 39954789
Alignment:
| Q |
203 |
gcttcattctctttctcgggtcgttctatctcctccttcaacttcattagttcattactaatatcatctttgtgcttgagttcaagcttcagtgtttcat |
302 |
Q |
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| T |
39954971 |
gcttcattctctttctcgagtcgttctatctcctccttcaacttcattagttcattactaatatcatctttgtgcttcagttcaagcttcagtgtttcat |
39954872 |
T |
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| Q |
303 |
tccctttcttgagttcatctgtttcttccctcagcttcattacttcattattgatggtacctttctgcttgagttcattcttc |
385 |
Q |
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| T |
39954871 |
tccctttcttgagttcatctgtttcttccctcagcttcattacttcattattgatggtacctttctgcttgagttcattcttc |
39954789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 39954818 - 39954648
Alignment:
| Q |
29 |
atggtatctttctctttgagttcagccttttgcgcttcattctctttctcgagtcgttctatctcctccttcaacttcattagttcattactaatatcat |
128 |
Q |
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|||||| |||||| ||||||||| ||| || |||||||| |||||||||||| ||| ||||| ||| |||||||||||| ||||||| ||| || |
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| T |
39954818 |
atggtacctttctgcttgagttcattcttctgtgcttcattttctttctcgagttgtttaatctcgtccctcaacttcattacgtcattacaaatggtat |
39954719 |
T |
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| Q |
129 |
ctttgtgcttgagttcaagcttcagtgtttcattccctttcttgagttcatctgtttcttccctcagcttc |
199 |
Q |
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|||| || |||||| || |||| ||| | |||| ||||||| |||| ||| |||||||||||| |||| |
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| T |
39954718 |
ctttctgattgagtccatccttctgtgcattattcactttcttcagttgttctatttcttccctcaacttc |
39954648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 377
Target Start/End: Complemental strand, 39954786 - 39954608
Alignment:
| Q |
202 |
tgcttcattctctttctcgggtcgttctatctcctccttcaacttcattagttcattactaatatcatctttgtgcttgagttcaagcttcagtgtttca |
301 |
Q |
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||||||||| ||||||||| || ||| ||||| ||| |||||||||||| ||||||| ||| |||||| || |||||| || |||| ||| | | |
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| T |
39954786 |
tgcttcattttctttctcgagttgtttaatctcgtccctcaacttcattacgtcattacaaatggtatctttctgattgagtccatccttctgtgcatta |
39954687 |
T |
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| Q |
302 |
ttccctttcttgagttcatctgtttcttccctcagcttc---attacttcattattgatggtacctttctgcttgagtt |
377 |
Q |
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||| ||||||| |||| ||| |||||||||||| |||| | |||||||||| | ||||| ||||||||||||||| |
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| T |
39954686 |
ttcactttcttcagttgttctatttcttccctcaacttctttactacttcattactaatggtctctttctgcttgagtt |
39954608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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