View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5419_high_6 (Length: 257)
Name: NF5419_high_6
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5419_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 35655853 - 35655612
Alignment:
| Q |
1 |
aacacactgagactccttacttgtctccaatactcaccatatgcacaacttgccacatctttggaactgaataaaaggatatcaaagattttaagttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35655853 |
aacacactgagactccttacttgtctccaatactcaccatatgcacaacttgccacatctttggaactgaataaaaggatatcaaagattttaagttgtg |
35655754 |
T |
|
| Q |
101 |
gcctatcacagaagactaagtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35655753 |
gcctatcacagaagactaagtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcat |
35655654 |
T |
|
| Q |
201 |
taaagggccatatttgtgagctaaatcttggagtgatctgtg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35655653 |
taaagggccatatttgtgagctaaatcttggagtgatctgtg |
35655612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 35676930 - 35676699
Alignment:
| Q |
4 |
acactgagactccttacttgtctccaatactcaccatatgcacaacttgccacatctttggaactgaataaaaggatatcaaagattttaagttgtggcc |
103 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||||||| | ||||||| |
|
|
| T |
35676930 |
acactgagacttcttacttgtttccaatactcaccatatccacaacttgccacatctttggaaccgtagaaaaggatatcaaagattttacgatgtggcc |
35676831 |
T |
|
| Q |
104 |
tatcacagaagactaagtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcattaa |
203 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| || || ||||| |||||||||||||||||||| |
|
|
| T |
35676830 |
tatcagcgaagaccgagtcatgagttttcattacttctcttgctgcatcagcagaggaaactacaaccaccggtaccttaccaaaataaagaagcattaa |
35676731 |
T |
|
| Q |
204 |
agggccatatttgtgagctaaatcttggagtg |
235 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |
|
|
| T |
35676730 |
agggccatatttgtgagctaaattttggagtg |
35676699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 35641517 - 35641276
Alignment:
| Q |
1 |
aacacactgagactccttacttgtctccaatactcaccatatgcacaacttgccacatctttggaactgaataaaaggatatcaaagattttaagttgtg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | || | |||||||||||||||| |||||| |
|
|
| T |
35641517 |
aacacactaagactccttacttgtctccaatactcaccatatgcacaacttgctacacctttggaaccatacaacatgatatcaaagattttacgttgtg |
35641418 |
T |
|
| Q |
101 |
gcctatcacagaagactaagtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcat |
200 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
35641417 |
gcctatcagagaagatcaagtcatgagttttcattacctgacttgctgcatcagctgaggaaactacaaccactggtaccttccctaaataaagaagcat |
35641318 |
T |
|
| Q |
201 |
taaagggccatatttgtgagctaaatcttggagtgatctgtg |
242 |
Q |
| |
|
|| ||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35641317 |
tagaggaccatacttgtgagctaaatcttggagtgatctgtg |
35641276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 35646437 - 35646213
Alignment:
| Q |
1 |
aacacactgagactccttacttgtctccaatactcaccatatgcacaacttgccacatctttggaactgaataaaaggatatcaaagattttaagttgtg |
100 |
Q |
| |
|
|||| ||| |||||||||| ||| |||||||| ||||||||| ||||||| |||| ||||||||||| ||||||| || ||| |||||| | | || |
|
|
| T |
35646437 |
aacaaacttagactccttaattgcctccaatattcaccatatccacaactagccatatctttggaaccatataaaagtatgtcattcattttacgatatg |
35646338 |
T |
|
| Q |
101 |
gcctatcacagaagactaagtcatgagttttcattacttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcat |
200 |
Q |
| |
|
| |||||| |||| || || |||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35646337 |
gtctatcagagaaaaccaaatcatgagttttcattacttttcttgctgtatcagcagaggaaattacaagtactggaaccttcccaaaataaagaagcat |
35646238 |
T |
|
| Q |
201 |
taaagggccatatttgtgagctaaa |
225 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
35646237 |
taaagggccatatttgtgagataaa |
35646213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 35673466 - 35673244
Alignment:
| Q |
17 |
ttacttgtctccaatactcaccatatgcacaacttgccacatctttggaact--gaat-----aaaaggatatcaaagattttaagttgtggcctatcac |
109 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| |||| ||||||| | ||| || | |||||||| ||||||| |||||| |||||| |
|
|
| T |
35673466 |
ttacttgtctccattactcaccatttgcacaacttgctacatatttggaagttggaaccatacaatatgatatcaaggattttattttgtggtctatcag |
35673367 |
T |
|
| Q |
110 |
agaagactaagtcatgagttttcatta---cttttcttgctgcatcagctgaggaaactacaagtactggaaccttcccaaaataaagaagcattaaagg |
206 |
Q |
| |
|
|||| | |||||||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35673366 |
agaaaagcaagtcatggattttcattattacttttcttgctgcatcagc-----aaac-acaagtactggaaccttcccaaaataaagaagcactaaagg |
35673273 |
T |
|
| Q |
207 |
gccatatttgtgagctaaatcttggagtg |
235 |
Q |
| |
|
||||| |||||||||| |||||| ||||| |
|
|
| T |
35673272 |
gccatttttgtgagctgaatcttagagtg |
35673244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University