View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5419_high_7 (Length: 251)

Name: NF5419_high_7
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5419_high_7
NF5419_high_7
[»] chr1 (13 HSPs)
chr1 (1-241)||(49166454-49166696)
chr1 (1-58)||(8900846-8900903)
chr1 (1-58)||(5368826-5368883)
chr1 (1-58)||(5346993-5347050)
chr1 (1-58)||(41944822-41944879)
chr1 (2-48)||(20814797-20814843)
chr1 (1-43)||(32804291-32804333)
chr1 (1-58)||(11900880-11900937)
chr1 (1-58)||(35489249-35489306)
chr1 (1-50)||(37247624-37247673)
chr1 (1-58)||(43946439-43946495)
chr1 (14-58)||(31032473-31032517)
chr1 (1-57)||(34890238-34890294)
[»] chr8 (13 HSPs)
chr8 (1-58)||(24185584-24185641)
chr8 (1-58)||(42158433-42158490)
chr8 (2-58)||(6590836-6590892)
chr8 (2-58)||(20694450-20694506)
chr8 (1-58)||(14113265-14113322)
chr8 (2-58)||(6649126-6649182)
chr8 (1-58)||(1784120-1784177)
chr8 (3-58)||(18147842-18147897)
chr8 (12-58)||(429829-429875)
chr8 (1-50)||(40737862-40737910)
chr8 (1-50)||(44329196-44329245)
chr8 (10-58)||(9428122-9428170)
chr8 (14-58)||(30358646-30358690)
[»] chr5 (8 HSPs)
chr5 (3-58)||(14751156-14751211)
chr5 (1-57)||(30046359-30046415)
chr5 (1-60)||(5865893-5865952)
chr5 (1-58)||(19522570-19522627)
chr5 (1-47)||(8355591-8355637)
chr5 (1-43)||(10244045-10244087)
chr5 (1-43)||(32522574-32522616)
chr5 (14-58)||(32741377-32741421)
[»] chr6 (7 HSPs)
chr6 (1-58)||(862853-862910)
chr6 (1-58)||(9910547-9910603)
chr6 (1-58)||(16260675-16260732)
chr6 (1-60)||(31159106-31159165)
chr6 (1-58)||(5069971-5070028)
chr6 (15-58)||(31039417-31039460)
chr6 (1-50)||(26296261-26296310)
[»] chr2 (7 HSPs)
chr2 (1-58)||(43445082-43445139)
chr2 (1-58)||(41517416-41517473)
chr2 (1-56)||(9895581-9895635)
chr2 (1-59)||(33956316-33956374)
chr2 (1-58)||(11565053-11565110)
chr2 (1-56)||(11021089-11021144)
chr2 (14-58)||(9113985-9114029)
[»] chr7 (7 HSPs)
chr7 (3-53)||(21955371-21955421)
chr7 (1-58)||(2399752-2399809)
chr7 (1-58)||(15996168-15996225)
chr7 (1-58)||(23097532-23097589)
chr7 (29-59)||(14574988-14575018)
chr7 (1-58)||(17801434-17801491)
chr7 (31-59)||(40992761-40992789)
[»] chr4 (8 HSPs)
chr4 (1-58)||(17236148-17236205)
chr4 (1-58)||(54918997-54919054)
chr4 (1-43)||(8678989-8679031)
chr4 (1-43)||(16018188-16018230)
chr4 (1-58)||(6371946-6372003)
chr4 (13-58)||(38562190-38562235)
chr4 (1-57)||(52840320-52840375)
chr4 (1-58)||(10065118-10065175)
[»] chr3 (2 HSPs)
chr3 (1-58)||(29212874-29212931)
chr3 (1-59)||(18093808-18093866)
[»] scaffold0514 (1 HSPs)
scaffold0514 (2-58)||(5851-5907)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 49166696 - 49166454
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaatgaaggatttcaaacatcatctaaaatggtagaatcaaaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49166696 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaatgaaggatttcaaacatcatctaaaatggtagaatcaaaaca 49166597  T
Q  101 gttttggggatatggaaggcaaacctggtttctgctacatacaagaatgttatttctatgtcctgttgatatatatcaagttt--tttctagctttccgg 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  49166596 gttttggggatatggaaggcaaacctggtttctgctacatacaagaatgttatttctatgtcctgttgatatatatcaagttttgtttctagctttccgg 49166497  T
Q  199 tggaacggctaatctatttgtatcttgacagttgacatctctg 241  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  49166496 tggaacggctaatctatttgtatcttgacagttgacatctctg 49166454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8900846 - 8900903
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||    
T  8900846 taatgtatctaacctataaatgtgaccggatacattaattattcaatatacctaaaaa 8900903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 5368826 - 5368883
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||| ||||||||||| |||||||||||||||| |||| | |||||||    
T  5368826 taatgtatctaacccataaatgtgaccggatacattaattattcaatgcatctaaaaa 5368883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5347050 - 5346993
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||| |||||||  ||||||||||| ||||||||||||||||| |||||| |||||||    
T  5347050 taatatatctaatatataaatgtgaatggatacattaattattcaatgtatctaaaaa 5346993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41944822 - 41944879
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||| ||||||||||| || ||||||||||||| | ||||| ||||||    
T  41944822 taatgtatctaacccataaatgtgaccgggtacattaattattcattgtacttaaaaa 41944879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 20814797 - 20814843
Alignment:
Q  2 aatgtatctaacctataaatgtgactggatacattaattatttaatg 48  Q
    ||||||||| || ||||||||||||  ||||||||||||||||||||    
T  20814797 aatgtatctgacatataaatgtgacaagatacattaattatttaatg 20814843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32804333 - 32804291
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatt 43  Q
    ||||||||||| | |||||||||||||| ||||||||||||||    
T  32804333 taatgtatctatcatataaatgtgactgaatacattaattatt 32804291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11900880 - 11900937
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||| | |||||||||||||||  |||| |||||||||| |||||| |||||||    
T  11900880 taatgtatttgacctataaatgtgaccagatatattaattattcaatgtatctaaaaa 11900937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35489249 - 35489306
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    ||||||||||||||||||||| | ||  ||| ||||||||||| ||||||| ||||||    
T  35489249 taatgtatctaacctataaatatcaccagattcattaattattcaatgtacataaaaa 35489306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 37247624 - 37247673
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgta 50  Q
    ||||||||||||||||||||||| |||| |||  ||||||||| ||||||    
T  37247624 taatgtatctaacctataaatgtaactgtatatgttaattattaaatgta 37247673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 43946495 - 43946439
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    ||||| |||||| | ||||||||||| | ||||||||||||||| |||||||||||||    
T  43946495 taatgcatctaatccataaatgtgaccg-atacattaattatttgatgtacctaaaaa 43946439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 31032517 - 31032473
Alignment:
Q  14 ctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||| |||||||||||||||| ||| | |||||||    
T  31032517 ctataaatgtgactagatacattaattatttcatgaatctaaaaa 31032473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 34890238 - 34890294
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaa 57  Q
    |||| |||||||| ||||||||| || |||||||||||||||| |||| | ||||||    
T  34890238 taatatatctaacatataaatgtaaccggatacattaattattcaatgaatctaaaa 34890294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 24185584 - 24185641
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24185584 taatatatctaacctataaatgtgactggatacattaattattcaatgtacctaaaaa 24185641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 42158433 - 42158490
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||  |||||||||||||||||||||||||||| |||||| |||||||    
T  42158433 taatgtatctaactcataaatgtgactggatacattaattattcaatgtatctaaaaa 42158490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 6590836 - 6590892
Alignment:
Q  2 aatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    ||||||||||||| |||||| |||| |||||||||||||||| ||||||||||||||    
T  6590836 aatgtatctaacccataaatatgaccggatacattaattattcaatgtacctaaaaa 6590892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 20694506 - 20694450
Alignment:
Q  2 aatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||||||||||||||| |||| |||||||||| |||||| |||||||    
T  20694506 aatgtatctaacctataaatgtgacttgataaattaattattcaatgtatctaaaaa 20694450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 14113265 - 14113322
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||| ||||||||||| | |||||||||||||| |||||| |||||||    
T  14113265 taatgtatctaacccataaatgtgaccgtatacattaattattcaatgtatctaaaaa 14113322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 6649126 - 6649182
Alignment:
Q  2 aatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    ||||||||||||| || ||| |||| |||||||||||||||| ||||||||||||||    
T  6649126 aatgtatctaacccatgaatatgaccggatacattaattattcaatgtacctaaaaa 6649182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1784177 - 1784120
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||| |||||| |||| ||||||||||| |||| |||||| |||||||    
T  1784177 taatgtatctaacccataaatatgaccggatacattaaatattcaatgtatctaaaaa 1784120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 18147897 - 18147842
Alignment:
Q  3 atgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||| |||||||| | ||||||||||||||| ||||| |||| |||||||||    
T  18147897 atgtatctgacctataattatgactggatacattagttattcaatgaacctaaaaa 18147842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 429829 - 429875
Alignment:
Q  12 acctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    ||||||||||||||||| ||||||| |||||| |||||| |||||||    
T  429829 acctataaatgtgactgaatacattgattattcaatgtatctaaaaa 429875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 40737910 - 40737862
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgta 50  Q
    |||||||||| |||| |||||||||| |||||||||||||||| ||||||    
T  40737910 taatgtatctgacct-taaatgtgaccggatacattaattattcaatgta 40737862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 44329245 - 44329196
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgta 50  Q
    |||||||||||||| |||||||||||   |||||||||||||| ||||||    
T  44329245 taatgtatctaacccataaatgtgaccaaatacattaattattcaatgta 44329196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 9428122 - 9428170
Alignment:
Q  10 taacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||| |||||||||||||  |||||||||||||| ||||||| ||||||    
T  9428122 taacttataaatgtgactaaatacattaattattaaatgtacttaaaaa 9428170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 30358646 - 30358690
Alignment:
Q  14 ctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    ||||||||||||| |||||||||| ||||| ||| ||||||||||    
T  30358646 ctataaatgtgaccggatacattatttattcaatatacctaaaaa 30358690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 14751211 - 14751156
Alignment:
Q  3 atgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||    
T  14751211 atgtatctaacctataaatgtaactggatacattaattattcaatgcacctaaaaa 14751156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 30046359 - 30046415
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaa 57  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||    
T  30046359 taatgtatctaacctataaatgtggccggatacattaattattcaatgtatctaaaa 30046415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5865893 - 5865952
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaatg 60  Q
    ||||||||||||| |||||||||||| ||||| || ||||||| |||| |||||||||||    
T  5865893 taatgtatctaacatataaatgtgaccggatatatcaattattcaatgaacctaaaaatg 5865952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19522570 - 19522627
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||| ||||||||||    ||| |||||||||||||||||||||||||    
T  19522570 taatgtatctaacccataaatgtgatcaaatatattaattatttaatgtacctaaaaa 19522627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8355637 - 8355591
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaat 47  Q
    ||||||||| ||| |||||||||||  ||||||||||||||||||||    
T  8355637 taatgtatccaacatataaatgtgatcggatacattaattatttaat 8355591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10244045 - 10244087
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatt 43  Q
    |||||||||| |||||||||||||| | |||||||||||||||    
T  10244045 taatgtatctgacctataaatgtgaatagatacattaattatt 10244087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32522616 - 32522574
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatt 43  Q
    |||||||||| | ||||||||||||||| ||||||||||||||    
T  32522616 taatgtatctgatctataaatgtgactgcatacattaattatt 32522574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 32741377 - 32741421
Alignment:
Q  14 ctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||  |||||| ||||||||||||| |||||||||    
T  32741377 ctataaatgtgaccagatacaataattatttaatgaacctaaaaa 32741421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 862910 - 862853
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    ||||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||    
T  862910 taatgtatctaacctataaatgtgactggatacaccagttattcaatgtacctaaaaa 862853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 9910547 - 9910603
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||    
T  9910547 taatgtatctaacctataaa-gtgaccggatacattaattattcaatatacctaaaaa 9910603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 16260675 - 16260732
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||| ||||||||||||||||||||| |||||||||||||| ||| ||| ||||||    
T  16260675 taatgtctctaacctataaatgtgactgaatacattaattattcaatatacgtaaaaa 16260732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31159165 - 31159106
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaatg 60  Q
    ||||||||||||| |||||||||||| | |||||||||||||| |||| || ||||||||    
T  31159165 taatgtatctaacatataaatgtgaccgaatacattaattattcaatgaacataaaaatg 31159106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5070028 - 5069971
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    ||||||||||||||||| ||| || | |||||||||||||||| |||||| |||||||    
T  5070028 taatgtatctaacctattaatatggccggatacattaattattcaatgtatctaaaaa 5069971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 31039417 - 31039460
Alignment:
Q  15 tataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||    
T  31039417 tataaatgtgactgtatacattaattattcaatgtacttaaaaa 31039460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26296261 - 26296310
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgta 50  Q
    |||||||| ||| ||||||||||||||| |||| ||||||||| ||||||    
T  26296261 taatgtatttaatctataaatgtgactgtatacgttaattattcaatgta 26296310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 43445082 - 43445139
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||    
T  43445082 taatgtatctaacccataaatgtgaccggatacattaattattcaatgtacataaaaa 43445139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41517416 - 41517473
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||| ||||||||||  |||||||||||||||| ||||||| ||||||    
T  41517416 taatgtatctaacccataaatgtgatcggatacattaattattcaatgtacttaaaaa 41517473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 9895635 - 9895581
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaa 56  Q
    ||||||||||||||||||||||||||| |||||||||| |||| |||||| |||||    
T  9895635 taatgtatctaacctataaatgtgactagatacattaa-tattcaatgtaactaaa 9895581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33956374 - 33956316
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaat 59  Q
    ||||||||||||| ||||||| |||| |||||||||||||||| ||||||  |||||||    
T  33956374 taatgtatctaacttataaatatgaccggatacattaattattcaatgtatataaaaat 33956316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11565053 - 11565110
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    ||||||| || | ||||||||||||||||||||||||| |||| ||||||| ||||||    
T  11565053 taatgtacctgatctataaatgtgactggatacattaaatattgaatgtacataaaaa 11565110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11021144 - 11021089
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaa 56  Q
    |||||||||| |||||||||||||| | |||||||||| |||| |||| |||||||    
T  11021144 taatgtatctgacctataaatgtgaatagatacattaactattcaatgaacctaaa 11021089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 9113985 - 9114029
Alignment:
Q  14 ctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||| ||||||||||||||| |||| | |||||||    
T  9113985 ctataaatgtgactagatacattaattattcaatgaatctaaaaa 9114029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 21955421 - 21955371
Alignment:
Q  3 atgtatctaacctataaatgtgactggatacattaattatttaatgtacct 53  Q
    |||||||| || ||||||||||||||||||||||||||||| |||||||||    
T  21955421 atgtatctgacatataaatgtgactggatacattaattattcaatgtacct 21955371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 2399752 - 2399809
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    ||||||||||||| |||||||||||| |||||||||||||||| ||| ||| ||||||    
T  2399752 taatgtatctaacttataaatgtgaccggatacattaattattcaatatacttaaaaa 2399809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 15996168 - 15996225
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||| ||||||||| |||| ||||||||||||||||| |||||| |||||||    
T  15996168 taatgtatctgacctataaacgtgattggatacattaattattcaatgtatctaaaaa 15996225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23097589 - 23097532
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||| |||| |||||||||||  ||||||||||||| || ||||||||||||||    
T  23097589 taatgtatttaacttataaatgtgatgggatacattaattgttcaatgtacctaaaaa 23097532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 14575018 - 14574988
Alignment:
Q  29 gatacattaattatttaatgtacctaaaaat 59  Q
    |||||||||||||||||||||||||||||||    
T  14575018 gatacattaattatttaatgtacctaaaaat 14574988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17801434 - 17801491
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    ||||||||||||  ||||||||| ||| ||||||||||||||| |||| | |||||||    
T  17801434 taatgtatctaatttataaatgttactagatacattaattattcaatgaatctaaaaa 17801491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 40992789 - 40992761
Alignment:
Q  31 tacattaattatttaatgtacctaaaaat 59  Q
    |||||||||||||||||||||||||||||    
T  40992789 tacattaattatttaatgtacctaaaaat 40992761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 17236205 - 17236148
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||| | |||||||    
T  17236205 taatgtatttaacctataaatgtgaccggatacattaattatataatgcagctaaaaa 17236148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 54918997 - 54919054
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||||||    
T  54918997 taatgtatctaacctataaacgtgaccggatacattagttattcaatgtacttaaaaa 54919054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8679031 - 8678989
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatt 43  Q
    ||||||||||||| |||||||||||| ||||||||||||||||    
T  8679031 taatgtatctaacatataaatgtgaccggatacattaattatt 8678989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16018230 - 16018188
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatt 43  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  16018230 taatgtatctaacctataaatatgactggatacgttaattatt 16018188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 6372003 - 6371946
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||| |||||||| ||   |||||||||||||| ||||||||||||||    
T  6372003 taatgtatctaacccataaatgtaaccatatacattaattattcaatgtacctaaaaa 6371946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 38562190 - 38562235
Alignment:
Q  13 cctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||    
T  38562190 cctataaatgtgaccggatacattaattattcaatgtatctaaaaa 38562235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 52840320 - 52840375
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaa 57  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||| | ||||||    
T  52840320 taatgtatctaacatataaatgtgac-cgatacattaattatttaatgaatctaaaa 52840375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10065118 - 10065175
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||  |||||| ||   |||||||||||||||| ||||||||||||||    
T  10065118 taatgtatctaactcataaatatggtcggatacattaattattcaatgtacctaaaaa 10065175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29212931 - 29212874
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||| ||||||||||||||||||||||||| |||||| ||| || |||||||    
T  29212931 taatgtatctgacctataaatgtgactggatacattgattattcaatatatctaaaaa 29212874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18093866 - 18093808
Alignment:
Q  1 taatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaat 59  Q
    |||||||||| |||||||||||||||  ||||||||||||||| ||||||  |||||||    
T  18093866 taatgtatctgacctataaatgtgacaagatacattaattattcaatgtatttaaaaat 18093808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 5907 - 5851
Alignment:
Q  2 aatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 58  Q
    |||||||||||||||| ||  |||| |||||||||| ||||| ||||||||||||||    
T  5907 aatgtatctaacctatgaagatgaccggatacattagttattcaatgtacctaaaaa 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University