View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5419_high_8 (Length: 244)

Name: NF5419_high_8
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5419_high_8
NF5419_high_8
[»] chr1 (12 HSPs)
chr1 (19-244)||(49166718-49166941)
chr1 (206-240)||(8174087-8174121)
chr1 (203-240)||(457562-457599)
chr1 (206-243)||(25396028-25396065)
chr1 (203-244)||(35489186-35489227)
chr1 (207-244)||(38636222-38636259)
chr1 (208-241)||(50266948-50266981)
chr1 (208-240)||(5346956-5346988)
chr1 (208-244)||(8174205-8174241)
chr1 (208-240)||(24419527-24419559)
chr1 (208-244)||(38636312-38636348)
chr1 (208-244)||(41944764-41944800)
[»] chr8 (5 HSPs)
chr8 (205-244)||(1784199-1784238)
chr8 (208-244)||(6590777-6590813)
chr8 (212-240)||(6590897-6590925)
chr8 (216-244)||(27988081-27988109)
chr8 (216-244)||(28045383-28045411)
[»] chr3 (3 HSPs)
chr3 (209-244)||(16867613-16867648)
chr3 (209-244)||(26331326-26331361)
chr3 (203-244)||(27786566-27786607)
[»] chr6 (3 HSPs)
chr6 (208-241)||(26478486-26478519)
chr6 (209-244)||(5069935-5069970)
chr6 (209-242)||(862933-862966)
[»] chr4 (6 HSPs)
chr4 (208-244)||(10065060-10065096)
chr4 (207-243)||(38562237-38562273)
chr4 (208-237)||(23292359-23292388)
chr4 (208-244)||(38562120-38562156)
chr4 (208-236)||(51267191-51267219)
chr4 (208-240)||(52840262-52840294)
[»] chr7 (1 HSPs)
chr7 (209-244)||(34670348-34670383)
[»] chr5 (8 HSPs)
chr5 (209-244)||(14751235-14751270)
chr5 (209-244)||(34445256-34445291)
chr5 (206-240)||(6266253-6266287)
chr5 (209-242)||(5865953-5865986)
chr5 (206-243)||(40772961-40772998)
chr5 (208-240)||(8850258-8850290)
chr5 (212-244)||(18550975-18551007)
chr5 (208-240)||(28499776-28499808)
[»] chr2 (6 HSPs)
chr2 (209-244)||(11564996-11565031)
chr2 (209-244)||(30429064-30429099)
chr2 (209-243)||(9733474-9733508)
chr2 (209-243)||(12488102-12488136)
chr2 (203-240)||(41517478-41517515)
chr2 (208-244)||(41517358-41517394)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 49166941 - 49166718
Alignment:
Q  19 actgattcaattaagtatcaacagtttagatcattgtcaaattgttcatctgnnnnnnnnnnnnnnnnnnngaactggggtacaaa-ccttctaaggtgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||| |||||||||||||    
T  49166941 actgattcaattaagtatcaacagtttagatcattgtcaaattgttcatctgaataataataataata---gaactggggtacaaaaccttctaaggtgc 49166845  T
Q  118 ttggtgcatggttcatgagtactgatttcacaaaagtagtggaactgtggaagaaaagtggaggtagctacaattttcaggctggagtacatactccctc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49166844 ttggtgcatggttcatgagtactgatttcacaaaagtagtggaactgtggaagaaaagtggaggtagctacaattttcaggctggagtatatactccctc 49166745  T
Q  218 tggtcacatttataagcaaaaaacaac 244  Q
    |||||||||||||||||||||||||||    
T  49166744 tggtcacatttataagcaaaaaacaac 49166718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 8174087 - 8174121
Alignment:
Q  206 acatactccctctggtcacatttataagcaaaaaa 240  Q
    |||||||||||||| ||||||||||||||||||||    
T  8174087 acatactccctctgatcacatttataagcaaaaaa 8174121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 457562 - 457599
Alignment:
Q  203 agtacatactccctctggtcacatttataagcaaaaaa 240  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  457562 agtatatactccctccggtcacatttataagcaaaaaa 457599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 25396065 - 25396028
Alignment:
Q  206 acatactccctctggtcacatttataagcaaaaaacaa 243  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  25396065 acatactccctccggtcatatttataagcaaaaaacaa 25396028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 35489186 - 35489227
Alignment:
Q  203 agtacatactccctctggtcacatttataagcaaaaaacaac 244  Q
    |||||||| |||||| |||||||||||||| |||||||||||    
T  35489186 agtacatattccctccggtcacatttataatcaaaaaacaac 35489227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 38636222 - 38636259
Alignment:
Q  207 catactccctctggtcacatttataagcaaaaaacaac 244  Q
    |||||||||||  |||||||||||||||||||||||||    
T  38636222 catactccctcctgtcacatttataagcaaaaaacaac 38636259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 50266948 - 50266981
Alignment:
Q  208 atactccctctggtcacatttataagcaaaaaac 241  Q
    ||||||||||| ||||||||||||||||||||||    
T  50266948 atactccctctagtcacatttataagcaaaaaac 50266981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 5346956 - 5346988
Alignment:
Q  208 atactccctctggtcacatttataagcaaaaaa 240  Q
    ||||| |||||||||||||||||||||||||||    
T  5346956 atacttcctctggtcacatttataagcaaaaaa 5346988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 8174241 - 8174205
Alignment:
Q  208 atactccctctggtcacatttataagcaaaaaacaac 244  Q
    |||||||||| |||||||||||||||||||| |||||    
T  8174241 atactccctccggtcacatttataagcaaaacacaac 8174205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 24419527 - 24419559
Alignment:
Q  208 atactccctctggtcacatttataagcaaaaaa 240  Q
    |||||||||| ||||||||||||||||||||||    
T  24419527 atactccctccggtcacatttataagcaaaaaa 24419559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 38636348 - 38636312
Alignment:
Q  208 atactccctctggtcacatttataagcaaaaaacaac 244  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  38636348 atactccctccggtcacatttaaaagcaaaaaacaac 38636312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 41944764 - 41944800
Alignment:
Q  208 atactccctctggtcacatttataagcaaaaaacaac 244  Q
    |||||||||  ||||||||||||||||||||||||||    
T  41944764 atactcccttcggtcacatttataagcaaaaaacaac 41944800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 1784238 - 1784199
Alignment:
Q  205 tacatactccctctggtcacatttataagcaaaaaacaac 244  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  1784238 tacatacttcctctggtcacatttataagcaaaaaacaac 1784199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 6590777 - 6590813
Alignment:
Q  208 atactccctctggtcacatttataagcaaaaaacaac 244  Q
    |||||||||| | ||||||||||||||||||||||||    
T  6590777 atactccctccgttcacatttataagcaaaaaacaac 6590813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 6590925 - 6590897
Alignment:
Q  212 tccctctggtcacatttataagcaaaaaa 240  Q
    |||||||||||||||||||||||||||||    
T  6590925 tccctctggtcacatttataagcaaaaaa 6590897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 27988081 - 27988109
Alignment:
Q  216 tctggtcacatttataagcaaaaaacaac 244  Q
    |||||||||||||||||||||||||||||    
T  27988081 tctggtcacatttataagcaaaaaacaac 27988109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 28045383 - 28045411
Alignment:
Q  216 tctggtcacatttataagcaaaaaacaac 244  Q
    |||||||||||||||||||||||||||||    
T  28045383 tctggtcacatttataagcaaaaaacaac 28045411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 16867613 - 16867648
Alignment:
Q  209 tactccctctggtcacatttataagcaaaaaacaac 244  Q
    ||||||||||||||||||||||||||||||||||||    
T  16867613 tactccctctggtcacatttataagcaaaaaacaac 16867648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 26331361 - 26331326
Alignment:
Q  209 tactccctctggtcacatttataagcaaaaaacaac 244  Q
    ||||||||| ||||||||||||||||||||||||||    
T  26331361 tactccctccggtcacatttataagcaaaaaacaac 26331326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 27786607 - 27786566
Alignment:
Q  203 agtacatactccctctggtcacatttataagcaaaaaacaac 244  Q
    ||||||||||||||| | |||||||||||||||||| |||||    
T  27786607 agtacatactccctccgatcacatttataagcaaaacacaac 27786566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 26478486 - 26478519
Alignment:
Q  208 atactccctctggtcacatttataagcaaaaaac 241  Q
    ||||||||||||||||||||||||||||||||||    
T  26478486 atactccctctggtcacatttataagcaaaaaac 26478519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 5069935 - 5069970
Alignment:
Q  209 tactccctctggtcacatttataagcaaaaaacaac 244  Q
    ||||||||||| ||||||||||||||||||||||||    
T  5069935 tactccctctgatcacatttataagcaaaaaacaac 5069970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 862966 - 862933
Alignment:
Q  209 tactccctctggtcacatttataagcaaaaaaca 242  Q
    ||||||||| ||||||||||||||||||||||||    
T  862966 tactccctccggtcacatttataagcaaaaaaca 862933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 10065060 - 10065096
Alignment:
Q  208 atactccctctggtcacatttataagcaaaaaacaac 244  Q
    |||||||||| ||||||||||||||||||||||||||    
T  10065060 atactccctccggtcacatttataagcaaaaaacaac 10065096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 38562273 - 38562237
Alignment:
Q  207 catactccctctggtcacatttataagcaaaaaacaa 243  Q
    ||||||||||| |||||||||||||||||||||||||    
T  38562273 catactccctccggtcacatttataagcaaaaaacaa 38562237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Original strand, 23292359 - 23292388
Alignment:
Q  208 atactccctctggtcacatttataagcaaa 237  Q
    ||||||||||||||||||||||||||||||    
T  23292359 atactccctctggtcacatttataagcaaa 23292388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 38562120 - 38562156
Alignment:
Q  208 atactccctctggtcacatttataagcaaaaaacaac 244  Q
    |||||||||  ||||||||||||||||||||||||||    
T  38562120 atactcccttcggtcacatttataagcaaaaaacaac 38562156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 51267219 - 51267191
Alignment:
Q  208 atactccctctggtcacatttataagcaa 236  Q
    |||||||||||||||||||||||||||||    
T  51267219 atactccctctggtcacatttataagcaa 51267191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 52840262 - 52840294
Alignment:
Q  208 atactccctctggtcacatttataagcaaaaaa 240  Q
    |||||||||| ||||||||||||||||||||||    
T  52840262 atactccctccggtcacatttataagcaaaaaa 52840294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 34670348 - 34670383
Alignment:
Q  209 tactccctctggtcacatttataagcaaaaaacaac 244  Q
    ||||||||| ||||||||||||||||||||||||||    
T  34670348 tactccctccggtcacatttataagcaaaaaacaac 34670383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 14751270 - 14751235
Alignment:
Q  209 tactccctctggtcacatttataagcaaaaaacaac 244  Q
    ||||||||| ||||||||||||||||||||||||||    
T  14751270 tactccctccggtcacatttataagcaaaaaacaac 14751235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 34445256 - 34445291
Alignment:
Q  209 tactccctctggtcacatttataagcaaaaaacaac 244  Q
    |||||||||||||||| |||||||||||||||||||    
T  34445256 tactccctctggtcacttttataagcaaaaaacaac 34445291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 6266287 - 6266253
Alignment:
Q  206 acatactccctctggtcacatttataagcaaaaaa 240  Q
    |||||||||||| ||||||||||||||||||||||    
T  6266287 acatactccctccggtcacatttataagcaaaaaa 6266253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 5865986 - 5865953
Alignment:
Q  209 tactccctctggtcacatttataagcaaaaaaca 242  Q
    ||||||||| ||||||||||||||||||||||||    
T  5865986 tactccctccggtcacatttataagcaaaaaaca 5865953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 40772961 - 40772998
Alignment:
Q  206 acatactccctctggtcacatttataagcaaaaaacaa 243  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  40772961 acatactccctccggtcacatttataagtaaaaaacaa 40772998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 8850258 - 8850290
Alignment:
Q  208 atactccctctggtcacatttataagcaaaaaa 240  Q
    |||||||||| ||||||||||||||||||||||    
T  8850258 atactccctccggtcacatttataagcaaaaaa 8850290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 18550975 - 18551007
Alignment:
Q  212 tccctctggtcacatttataagcaaaaaacaac 244  Q
    ||||||||||||||||||||||||||| |||||    
T  18550975 tccctctggtcacatttataagcaaaacacaac 18551007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 28499776 - 28499808
Alignment:
Q  208 atactccctctggtcacatttataagcaaaaaa 240  Q
    |||||||||| ||||||||||||||||||||||    
T  28499776 atactccctccggtcacatttataagcaaaaaa 28499808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 11564996 - 11565031
Alignment:
Q  209 tactccctctggtcacatttataagcaaaaaacaac 244  Q
    ||||||||| ||||||||||||||||||||||||||    
T  11564996 tactccctccggtcacatttataagcaaaaaacaac 11565031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 30429064 - 30429099
Alignment:
Q  209 tactccctctggtcacatttataagcaaaaaacaac 244  Q
    ||||||||| ||||||||||||||||||||||||||    
T  30429064 tactccctccggtcacatttataagcaaaaaacaac 30429099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 9733474 - 9733508
Alignment:
Q  209 tactccctctggtcacatttataagcaaaaaacaa 243  Q
    ||||||||| |||||||||||||||||||||||||    
T  9733474 tactccctccggtcacatttataagcaaaaaacaa 9733508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 12488136 - 12488102
Alignment:
Q  209 tactccctctggtcacatttataagcaaaaaacaa 243  Q
    ||||||||||||||||||||| |||||||||||||    
T  12488136 tactccctctggtcacatttacaagcaaaaaacaa 12488102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 41517515 - 41517478
Alignment:
Q  203 agtacatactccctctggtcacatttataagcaaaaaa 240  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  41517515 agtatatactccctccggtcacatttataagcaaaaaa 41517478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 41517358 - 41517394
Alignment:
Q  208 atactccctctggtcacatttataagcaaaaaacaac 244  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  41517358 atactccctccggtcacatttataagcaaaaaccaac 41517394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University