View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5419_low_1 (Length: 501)
Name: NF5419_low_1
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5419_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 6156924 - 6157415
Alignment:
| Q |
1 |
actatctttattatgcatgtaaattagtaggagaagaacaatgtatcaacataaaacatatgatgtataggtagagttnnnnnnnntacgagactaagat |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| |
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| T |
6156924 |
actatctttattatgcatgtaaattagtgggagaagaacaatgtatcaacagaaaacatgtgatgtataggtagagttaaaaaaaatacgagactaagat |
6157023 |
T |
|
| Q |
101 |
aaatgaacataggtgtttaaacactagataaatttgttatcataaaacaaagatgaaaaaccttcagctgcat--cataactaaactattaagtggtggc |
198 |
Q |
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| T |
6157024 |
aaatgaacataggtgtttaaacactagataaatttgttatcataaaacaaagatgaaaaaccttcagctgcatatcataactatactattaagtggtggc |
6157123 |
T |
|
| Q |
199 |
atgagagaaataaataaacaa-gcaaaagattaccaaaaagatgatcttcaagacatcccttaggcatgtattcataaaccaaaagcttttgatctatat |
297 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6157124 |
atgagagtaataaataaacaaagcaaaagattaccaaaaagatgatcttcaagacatcccttaggcatgtattcataaaccaaaagcttttgatctatac |
6157223 |
T |
|
| Q |
298 |
ttgtgcaatagccaattaacttaacaagataattggaatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccatt |
397 |
Q |
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| T |
6157224 |
ttgtgcaatagccaattaacttaacaagataattggaatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccatt |
6157323 |
T |
|
| Q |
398 |
aggatttaactgtttcactgcaacaagctgcaaatgcaacaaaatatagcaaagtgtgtgacgtttgtaacttaaataatgaccaaaagtataat |
492 |
Q |
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| T |
6157324 |
aggatttaaccgtttcactgcaacaagctgcaaatgcaacaaaatatagcaaagtgtgtgacgtttgtaattta---aatgaccaaaagtataat |
6157415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 232 - 429
Target Start/End: Original strand, 56020917 - 56021111
Alignment:
| Q |
232 |
caaaaagatgatcttcaagacatcccttaggcatgtattcataaaccaaaagcttttgatctatatttgtgcaatagccaattaacttaacaagataatt |
331 |
Q |
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| T |
56020917 |
caaaaagatgagcttcaagagatcccttaggcatgtattcataaaccaaaagcatttgatctccattggtgcaataaccaattaacttaacaagatta-- |
56021014 |
T |
|
| Q |
332 |
ggaatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccattaggatttaactgtttcactgcaacaagctgca |
429 |
Q |
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| T |
56021015 |
-gcatgacgcagcacacttagaatatcaagctctgtcataaattcgtgacagccttgacaaccatcaggatttaactgttttactgcaacaagctgca |
56021111 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 222 - 431
Target Start/End: Original strand, 54033244 - 54033450
Alignment:
| Q |
222 |
aaaagattaccaaaaagatgatcttcaagacatcccttaggcatgtattcataaaccaaaagcttttgatctatatttgtgcaatagccaattaacttaa |
321 |
Q |
| |
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| T |
54033244 |
aaaaggttaccaaaaagatgatcttcgagagatcccataggcatgtactcataaaccaaaagcctttgatctccatcagtgcagtagccaattaacttaa |
54033343 |
T |
|
| Q |
322 |
caagataattggaatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccattaggatttaactgtttcactgcaac |
421 |
Q |
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| T |
54033344 |
ccag---attagaatgatgtagcaagcttaacataagaacctcagtcacaaattcctgaaaaccttgacgaccatcatgacttaattgtttcacagcaac |
54033440 |
T |
|
| Q |
422 |
aagctgcaaa |
431 |
Q |
| |
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|||||||||| |
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| T |
54033441 |
aagctgcaaa |
54033450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 54033134 - 54033190
Alignment:
| Q |
124 |
ctagataaatttgttatcataaaacaaagatgaaaaaccttcagctgcatcataacta |
181 |
Q |
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| T |
54033134 |
ctagataaatttattgtcataaa-caaagatgaaaagccttcagctgtatcataacta |
54033190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 28342031 - 28342080
Alignment:
| Q |
228 |
ttaccaaaaagatgatcttcaagacatcccttaggcatgtattcataaac |
277 |
Q |
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| T |
28342031 |
ttaccaaatagatgataatcaagacttccattaggcatgtattcataaac |
28342080 |
T |
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