View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5419_low_10 (Length: 237)
Name: NF5419_low_10
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5419_low_10 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 35656121 - 35655899
Alignment:
| Q |
15 |
aggtatatagtctcctatacatatagtacccagcaactccccaaattccaacaacacctcctgaaatttcatccctcttccttcacggtatctttttccc |
114 |
Q |
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| T |
35656121 |
aggtatatagtctcctatacatacagtacccagcaactccccaaattccaacaacacctcctgaaatttcatccctcttccttcacggtatctttttccc |
35656022 |
T |
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| Q |
115 |
agagccaccctgcatactatatcattagtaattgtagagcacaactctgtcaagttcaagggcgacgagtcagaagaagaaacctccttaatatattcca |
214 |
Q |
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| T |
35656021 |
agagccaccctgcatactatatcattagtaattgtagagcacaactctgtcaagttcaagggcgacgagtcagaagaagaaacctccttaatatattcca |
35655922 |
T |
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| Q |
215 |
tcattcttaaagtttcttcctct |
237 |
Q |
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| T |
35655921 |
tcattcttaaagtttcttcctct |
35655899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 35646698 - 35646483
Alignment:
| Q |
16 |
ggtatatagtctcctatacatatagtacccagcaactccccaaattccaacaacacctcctgaaatttcatccctcttccttcacggtatctttttccca |
115 |
Q |
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| T |
35646698 |
ggtatataatctcctatacatacagtacctaataactctccaaactccaacaaccacttgtgaaatctcttaccttttccttcacggtatgtttttccaa |
35646599 |
T |
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| Q |
116 |
gagccaccctgcatactatatcattagtaattgtagagcacaactctgtcaagttcaagggcgacgagtcagaagaagaaacctccttaatatattccat |
215 |
Q |
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| T |
35646598 |
gtgccaccctgcatgctatatcattagtaattgtagcacacaactcacttaaattcaacggcgatg---cagaagaaca---ctccttaatatgtttcat |
35646505 |
T |
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| Q |
216 |
cattcttaaagtttcttcctct |
237 |
Q |
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| T |
35646504 |
cattcgtaatgtttcttcctct |
35646483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 35641685 - 35641624
Alignment:
| Q |
103 |
tatctttttcccagagccaccctgcatactatatcattagtaattgtagagcacaactctgt |
164 |
Q |
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| T |
35641685 |
tatctttttcctagagccaccctacatgttatatcattagtaattgtagaacacaactctgt |
35641624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 35677107 - 35677040
Alignment:
| Q |
97 |
tcacggtatctttttcccagagccaccctgcatactatatcattagtaattgtagagcacaactctgt |
164 |
Q |
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| T |
35677107 |
tcacggtatcttttgcctagaaccaccctgcatgttatatcattagtaactgtagaacacaactctgt |
35677040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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