View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5419_low_2 (Length: 423)

Name: NF5419_low_2
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5419_low_2
NF5419_low_2
[»] chr8 (25 HSPs)
chr8 (10-423)||(14731722-14732137)
chr8 (383-423)||(39954288-39954328)
chr8 (380-423)||(13844602-13844645)
chr8 (380-423)||(33405390-33405433)
chr8 (380-423)||(34897095-34897138)
chr8 (388-423)||(3025561-3025596)
chr8 (380-423)||(4786344-4786387)
chr8 (380-423)||(11927092-11927135)
chr8 (388-423)||(14134709-14134744)
chr8 (388-423)||(15816143-15816178)
chr8 (388-423)||(24447039-24447074)
chr8 (388-423)||(26529751-26529786)
chr8 (380-423)||(31236583-31236626)
chr8 (384-423)||(37283820-37283859)
chr8 (389-423)||(2572071-2572105)
chr8 (389-423)||(8342982-8343016)
chr8 (389-423)||(8343326-8343360)
chr8 (381-423)||(20785472-20785514)
chr8 (389-423)||(20873079-20873113)
chr8 (381-423)||(24362209-24362251)
chr8 (369-423)||(39820439-39820493)
chr8 (389-423)||(40332201-40332235)
chr8 (382-423)||(11803269-11803310)
chr8 (391-423)||(13018291-13018323)
chr8 (371-423)||(35431137-35431189)
[»] chr4 (24 HSPs)
chr4 (356-423)||(22440582-22440649)
chr4 (380-421)||(16189721-16189762)
chr4 (380-423)||(5775364-5775407)
chr4 (380-423)||(13134460-13134503)
chr4 (356-423)||(17425372-17425438)
chr4 (361-423)||(40699917-40699980)
chr4 (381-418)||(10499277-10499314)
chr4 (382-423)||(36635334-36635375)
chr4 (368-423)||(33950146-33950202)
chr4 (388-423)||(903932-903967)
chr4 (380-423)||(999354-999397)
chr4 (384-423)||(2234260-2234299)
chr4 (388-423)||(3731213-3731248)
chr4 (388-423)||(7214536-7214571)
chr4 (388-423)||(8423732-8423767)
chr4 (376-423)||(24343517-24343564)
chr4 (380-419)||(40613464-40613503)
chr4 (380-423)||(40742601-40742644)
chr4 (384-423)||(56257943-56257982)
chr4 (389-423)||(6485626-6485660)
chr4 (382-423)||(18576045-18576086)
chr4 (382-423)||(32910561-32910602)
chr4 (380-420)||(17344513-17344553)
chr4 (391-423)||(17446081-17446113)
[»] chr6 (28 HSPs)
chr6 (380-423)||(7086805-7086848)
chr6 (384-423)||(8805582-8805621)
chr6 (371-423)||(24832598-24832650)
chr6 (380-423)||(5732516-5732559)
chr6 (380-423)||(7265599-7265642)
chr6 (380-423)||(9025500-9025543)
chr6 (380-423)||(9195760-9195803)
chr6 (384-423)||(31579235-31579274)
chr6 (381-423)||(19040362-19040404)
chr6 (380-421)||(11591876-11591917)
chr6 (380-421)||(26562701-26562742)
chr6 (356-423)||(21924916-21924984)
chr6 (369-423)||(7938126-7938181)
chr6 (380-423)||(9617444-9617487)
chr6 (380-423)||(9629393-9629436)
chr6 (380-423)||(10842542-10842585)
chr6 (380-423)||(26178687-26178730)
chr6 (380-423)||(30866150-30866193)
chr6 (369-423)||(12235514-12235568)
chr6 (388-422)||(13360386-13360420)
chr6 (381-423)||(17302357-17302399)
chr6 (381-419)||(17327662-17327700)
chr6 (389-423)||(17841604-17841638)
chr6 (389-423)||(25038086-25038120)
chr6 (389-423)||(25096433-25096467)
chr6 (382-423)||(7151422-7151463)
chr6 (380-421)||(7377991-7378032)
chr6 (382-423)||(10888982-10889023)
[»] chr3 (20 HSPs)
chr3 (384-423)||(27277848-27277887)
chr3 (381-423)||(32804547-32804589)
chr3 (381-423)||(49505161-49505203)
chr3 (382-423)||(11313808-11313849)
chr3 (384-423)||(11251988-11252027)
chr3 (382-422)||(15314884-15314924)
chr3 (384-420)||(25064922-25064958)
chr3 (380-423)||(7928460-7928503)
chr3 (380-423)||(8789556-8789599)
chr3 (380-423)||(11665954-11665997)
chr3 (376-423)||(21211298-21211345)
chr3 (376-423)||(34307782-34307829)
chr3 (389-423)||(1509549-1509583)
chr3 (389-423)||(10268501-10268535)
chr3 (381-419)||(48202276-48202314)
chr3 (389-423)||(55401085-55401119)
chr3 (382-423)||(16192758-16192799)
chr3 (370-423)||(24205037-24205090)
chr3 (384-420)||(2620063-2620099)
chr3 (380-420)||(25093515-25093555)
[»] chr1 (37 HSPs)
chr1 (356-423)||(12443442-12443509)
chr1 (380-423)||(1864886-1864929)
chr1 (388-423)||(14332656-14332691)
chr1 (380-423)||(44482240-44482283)
chr1 (381-423)||(7918218-7918260)
chr1 (381-423)||(25361896-25361938)
chr1 (381-423)||(34712390-34712432)
chr1 (382-423)||(25098563-25098604)
chr1 (388-421)||(25272494-25272527)
chr1 (383-423)||(19324572-19324612)
chr1 (388-423)||(12713341-12713376)
chr1 (388-423)||(12717432-12717467)
chr1 (388-423)||(20131989-20132024)
chr1 (384-423)||(25452158-25452197)
chr1 (388-423)||(34298446-34298481)
chr1 (388-423)||(36878471-36878506)
chr1 (380-423)||(39953152-39953195)
chr1 (388-423)||(40181881-40181916)
chr1 (381-423)||(10233263-10233305)
chr1 (381-423)||(16164322-16164364)
chr1 (376-414)||(17705588-17705626)
chr1 (389-423)||(22515902-22515936)
chr1 (389-423)||(22881631-22881665)
chr1 (389-423)||(31015053-31015087)
chr1 (380-418)||(34371728-34371766)
chr1 (389-423)||(37055871-37055905)
chr1 (389-423)||(41877485-41877519)
chr1 (380-422)||(43492500-43492542)
chr1 (382-423)||(6427360-6427401)
chr1 (390-423)||(15323173-15323206)
chr1 (370-423)||(22794074-22794127)
chr1 (379-423)||(17831536-17831580)
chr1 (380-423)||(29229471-29229515)
chr1 (368-415)||(30749858-30749906)
chr1 (368-415)||(30771309-30771357)
chr1 (379-423)||(39101187-39101231)
chr1 (391-423)||(42004964-42004996)
[»] chr7 (31 HSPs)
chr7 (380-423)||(3721103-3721146)
chr7 (380-423)||(7328697-7328740)
chr7 (368-423)||(12278845-12278900)
chr7 (380-423)||(15902832-15902875)
chr7 (384-423)||(29787379-29787418)
chr7 (386-423)||(2424624-2424661)
chr7 (382-423)||(5233639-5233680)
chr7 (383-423)||(16341506-16341546)
chr7 (380-420)||(22602716-22602756)
chr7 (380-420)||(37870906-37870946)
chr7 (380-423)||(1433464-1433507)
chr7 (380-423)||(2948693-2948736)
chr7 (380-423)||(9482944-9482987)
chr7 (384-423)||(12289124-12289163)
chr7 (380-415)||(18213039-18213074)
chr7 (380-423)||(20549801-20549844)
chr7 (388-423)||(27093427-27093462)
chr7 (388-423)||(27184839-27184874)
chr7 (384-423)||(30731047-30731086)
chr7 (388-423)||(35493423-35493458)
chr7 (381-423)||(5548686-5548728)
chr7 (389-423)||(9408349-9408383)
chr7 (381-423)||(17851441-17851483)
chr7 (381-423)||(22868052-22868094)
chr7 (381-423)||(32308130-32308172)
chr7 (382-423)||(8160426-8160467)
chr7 (386-423)||(14729711-14729748)
chr7 (382-423)||(38143233-38143274)
chr7 (371-423)||(9756984-9757035)
chr7 (382-422)||(17307904-17307944)
chr7 (356-423)||(28155580-28155648)
[»] chr5 (27 HSPs)
chr5 (380-423)||(14873527-14873570)
chr5 (380-423)||(16203801-16203844)
chr5 (388-423)||(35017047-35017082)
chr5 (380-423)||(36838553-36838596)
chr5 (381-423)||(27144473-27144515)
chr5 (382-423)||(6471897-6471938)
chr5 (377-422)||(28473944-28473989)
chr5 (380-420)||(41091263-41091303)
chr5 (380-423)||(3966513-3966556)
chr5 (376-423)||(5467980-5468027)
chr5 (380-423)||(11685949-11685992)
chr5 (388-423)||(12927664-12927699)
chr5 (380-423)||(18421847-18421890)
chr5 (380-423)||(19429442-19429485)
chr5 (380-423)||(23012414-23012457)
chr5 (383-422)||(24273039-24273078)
chr5 (383-422)||(24389136-24389175)
chr5 (388-423)||(28262410-28262445)
chr5 (388-423)||(28588688-28588723)
chr5 (380-423)||(30502394-30502437)
chr5 (380-423)||(30542737-30542780)
chr5 (389-423)||(14674279-14674313)
chr5 (389-423)||(19579711-19579745)
chr5 (390-423)||(19438353-19438386)
chr5 (391-423)||(2577197-2577229)
chr5 (380-420)||(17482484-17482524)
chr5 (388-420)||(23016003-23016035)
[»] chr2 (21 HSPs)
chr2 (380-423)||(18276531-18276574)
chr2 (380-423)||(30527601-30527644)
chr2 (384-423)||(36409637-36409676)
chr2 (374-423)||(21616772-21616822)
chr2 (385-423)||(21782829-21782867)
chr2 (383-423)||(2665897-2665937)
chr2 (391-423)||(36281695-36281727)
chr2 (384-423)||(2331804-2331843)
chr2 (380-423)||(5367202-5367245)
chr2 (380-423)||(23718036-23718079)
chr2 (380-423)||(24105708-24105751)
chr2 (384-423)||(28412360-28412399)
chr2 (380-415)||(34784988-34785023)
chr2 (388-423)||(35191593-35191628)
chr2 (380-423)||(37411250-37411293)
chr2 (380-423)||(44860330-44860373)
chr2 (381-415)||(20922935-20922969)
chr2 (381-423)||(35449523-35449565)
chr2 (391-423)||(24011046-24011078)
chr2 (380-420)||(38355893-38355933)
chr2 (356-423)||(42832257-42832325)
[»] scaffold0020 (1 HSPs)
scaffold0020 (356-423)||(135288-135361)
[»] scaffold0123 (1 HSPs)
scaffold0123 (380-421)||(44531-44572)
[»] scaffold0236 (1 HSPs)
scaffold0236 (388-423)||(25782-25817)
[»] scaffold0044 (1 HSPs)
scaffold0044 (388-423)||(53190-53225)
[»] scaffold0036 (1 HSPs)
scaffold0036 (380-423)||(9753-9796)
[»] scaffold0003 (1 HSPs)
scaffold0003 (380-423)||(241604-241647)
[»] scaffold0011 (1 HSPs)
scaffold0011 (389-423)||(17764-17798)
[»] scaffold0990 (1 HSPs)
scaffold0990 (387-423)||(1497-1533)


Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Complemental strand, 14732137 - 14731722
Alignment:
Q  10 ataattctaatggttatgttgttgaccaatgatgccacttaggtagaaatggaaaaagcaggacttggaagagatcaagaagcacatgatacaaaattaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14732137 ataattctaatggttatgttgttgaccaatgatgccacttaggtagaaatggaaaaagcaggacttggaagagatcaagaagcacatgatacaaaattaa 14732038  T
Q  110 atacttgtatggaatgtgatgcgagtttnnnnnnncctgcctacctattgcagcacatgcaaagtcattcacttgaggtatttcctgacaatataatatg 209  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14732037 atacttgtatggaatgtgatgcgagtttaaaaaaacctgcctacctattgcagcacatgcaaagtcattcacttgaggtatttcctgacaatataatatg 14731938  T
Q  210 atgacaacattctaatgtcccaataaccaatttatctcatttttctttggaagaccactatataaggctgctgaaattgtgtttcttgaaattcatttca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14731937 atgacaacattctaatgtcccaataaccaatttatctcatttttctttggaagaccactatataaggctgctgaaattgtgtttcttgaaattcatttca 14731838  T
Q  310 atggattatgttccttggaatttgtctgtatatgaagcgcggacacttaggtgtgtcctggtgtcggacacgacacac--ataattacactaaattatgt 407  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  14731837 atggattatgttccttggaatttgtctgtatatgaagtgcggacacttaggcgtgtcctggtgtcggacacgacacacatataattacactaaattatgt 14731738  T
Q  408 gattttctcaaattat 423  Q
    ||||||||||||||||    
T  14731737 gattttctcaaattat 14731722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 39954288 - 39954328
Alignment:
Q  383 cacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  39954288 cacatataattacactaaattatgtgattttctcaaattat 39954328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 13844602 - 13844645
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||    
T  13844602 cgacacatataattacactcaattatgtgattttctcaaattat 13844645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 33405390 - 33405433
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  33405390 cgacacatataattacactaaattatgtgtttttctcaaattat 33405433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 34897138 - 34897095
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||    
T  34897138 cgacacatataattacactgaattatgtgattttctcaaattat 34897095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 3025596 - 3025561
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3025596 ataattacactgaattatgtgattttctcaaattat 3025561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 4786344 - 4786387
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| |||||||||||||||| |||||||    
T  4786344 cgacacatataattacactgaattatgtgattttcttaaattat 4786387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 11927092 - 11927135
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| |||||||||||||| |||||||||    
T  11927092 cgacacatataattacactgaattatgtgattttatcaaattat 11927135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 14134744 - 14134709
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14134744 ataattacactgaattatgtgattttctcaaattat 14134709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 15816143 - 15816178
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||||||||||||||||||| |||||||||    
T  15816143 ataattacactaaattatgtgattttttcaaattat 15816178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 24447074 - 24447039
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||| |||||||||||||||||||||||||||    
T  24447074 ataattaccctaaattatgtgattttctcaaattat 24447039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 26529786 - 26529751
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||| |||||||||||||||||||||||||||    
T  26529786 ataattaccctaaattatgtgattttctcaaattat 26529751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 31236583 - 31236626
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||    
T  31236583 cgacacatataattacattgaattatgtgattttctcaaattat 31236626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 384 - 423
Target Start/End: Original strand, 37283820 - 37283859
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  37283820 acacataattacactgaattatgtgattttctcagattat 37283859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 2572071 - 2572105
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||||    
T  2572071 taattacactaaattatgtgattttttcaaattat 2572105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 8343016 - 8342982
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||||    
T  8343016 taattacactaaattatgtgattttttcaaattat 8342982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 8343360 - 8343326
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||||    
T  8343360 taattacactaaattatgtgattttttcaaattat 8343326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 20785472 - 20785514
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||| ||||||||||||||| ||||||||||    
T  20785472 gacacatataattacattaaattatgtgatttcctcaaattat 20785514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 20873113 - 20873079
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||||    
T  20873113 taattacactaaattatgtgattttttcaaattat 20873079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 24362209 - 24362251
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||||| |||||||||||| |||||||||||    
T  24362209 gacacatataattacactgaattatgtgattctctcaaattat 24362251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 39820493 - 39820439
Alignment:
Q  369 ggtgtcggacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||||  || ||||||||||||||| | |||||||||||||||    
T  39820493 ggtgtccgacacgacacctatgattacactaaattatatcattttctcaaattat 39820439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 40332235 - 40332201
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||| ||||||||||||||||||||||||    
T  40332235 taattacactgaattatgtgattttctcaaattat 40332201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 11803310 - 11803269
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||||||| |||||||||||||||| |||||||    
T  11803310 acacatataattacactgaattatgtgattttcttaaattat 11803269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 13018323 - 13018291
Alignment:
Q  391 attacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||| |||||||||    
T  13018323 attacactaaattatgtgattttgtcaaattat 13018291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 423
Target Start/End: Original strand, 35431137 - 35431189
Alignment:
Q  371 tgtcggacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||| ||||||||||  || ||||||||||| ||||| |||||||||||||||    
T  35431137 tgtccgacacgacacctatgattacactaaaatatgtcattttctcaaattat 35431189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 22440582 - 22440649
Alignment:
Q  356 ttaggtgtgtcctggtgtcggacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||    
T  22440582 ttaggcgtgtcctagtgtcggacacgtcacatataattacactgaattatgtgattttctcaaattat 22440649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 380 - 421
Target Start/End: Complemental strand, 16189762 - 16189721
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaatt 421  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  16189762 cgacacacataattacactgaattatgtgattttctcaaatt 16189721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 5775364 - 5775407
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||    
T  5775364 cgacacatataattacacttaattatgtgattttctcaaattat 5775407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 13134503 - 13134460
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| |||||||||||||||||||||||||||| |||||||    
T  13134503 cgacacatataattacactaaattatgtgattttcttaaattat 13134460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 17425372 - 17425438
Alignment:
Q  356 ttaggtgtgtcctggtgtcggacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||| ||||| ||||| | ||||||||||||||| ||||||| ||||||||||||||||    
T  17425372 ttaggcgtgtccttgtgtctgacac-agacacataattacactgaattatgcgattttctcaaattat 17425438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 423
Target Start/End: Original strand, 40699917 - 40699980
Alignment:
Q  361 tgtgtcctggtgtcggaca-cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||| ||||||| || ||||  ||||||||||| |||||||||||||||    
T  40699917 tgtgtcctggtgtcggacatcgacacatatgattaagctaaattatgtcattttctcaaattat 40699980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 10499277 - 10499314
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaa 418  Q
    |||||| |||||||||||||||||||||||||||||||    
T  10499277 gacacatataattacactaaattatgtgattttctcaa 10499314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 36635375 - 36635334
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  36635375 acacatataattacactgaattatgtgattttctcaaattat 36635334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 423
Target Start/End: Complemental strand, 33950202 - 33950146
Alignment:
Q  368 tggtgtcggacac-gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||| |||||| || |||||| ||||||||||||||||||||||||||    
T  33950202 tggtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaattat 33950146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 903967 - 903932
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||| ||||||||||||||||||||||||    
T  903967 ataattacactgaattatgtgattttctcaaattat 903932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 999354 - 999397
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| |||||||||||||||||| |||||| ||||||||||    
T  999354 cgacacatataattacactaaattatatgatttactcaaattat 999397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 384 - 423
Target Start/End: Complemental strand, 2234299 - 2234260
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  2234299 acacataattacattgaattatgtgattttctcaaattat 2234260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 3731248 - 3731213
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||| |||||||||||||||||||||||||||    
T  3731248 ataattaccctaaattatgtgattttctcaaattat 3731213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 7214536 - 7214571
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||| ||||||||||||||||||||||||||    
T  7214536 ataattacattaaattatgtgattttctcaaattat 7214571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 8423732 - 8423767
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||| ||||||||||||||||||||||||    
T  8423732 ataattacactgaattatgtgattttctcaaattat 8423767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 376 - 423
Target Start/End: Complemental strand, 24343564 - 24343517
Alignment:
Q  376 gacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||  ||||||||||| |||||||| |||||||||||||||    
T  24343564 gacacgacacctataattacactgaattatgtaattttctcaaattat 24343517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 419
Target Start/End: Complemental strand, 40613503 - 40613464
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaa 419  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  40613503 cgacacatataattacactgaattatgtgattttctcaaa 40613464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 40742644 - 40742601
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| |||||||||||| ||||| |||||||||||||||||    
T  40742644 cgacacatataattacactagattatatgattttctcaaattat 40742601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 384 - 423
Target Start/End: Complemental strand, 56257982 - 56257943
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  56257982 acacataattacactgaattatatgattttctcaaattat 56257943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 6485626 - 6485660
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||||    
T  6485626 taattacactaaattatgtgattttttcaaattat 6485660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 423
Target Start/End: Original strand, 18576045 - 18576086
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||||||  ||||||||||||||||||||||||    
T  18576045 acacatataattacaccgaattatgtgattttctcaaattat 18576086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 32910602 - 32910561
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||| |||||||||||| |||||||| |||||||||||||||    
T  32910602 acacccataattacactgaattatgtcattttctcaaattat 32910561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 17344553 - 17344513
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaat 420  Q
    ||||||| ||||||||| |||||||||||||||||| ||||    
T  17344553 cgacacatataattacattaaattatgtgattttcttaaat 17344513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 17446113 - 17446081
Alignment:
Q  391 attacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||    
T  17446113 attacactaaattatgtgattttcttaaattat 17446081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 7086848 - 7086805
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  7086848 cgacacatataattacactaaattatgtgattttctcaaattat 7086805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 423
Target Start/End: Original strand, 8805582 - 8805621
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8805582 acacataattacactaaattatgtgattttctcaaattat 8805621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 24832650 - 24832598
Alignment:
Q  371 tgtcggacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||| ||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  24832650 tgtcagacacgacacatataattacactaaattataagattttctcaaattat 24832598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 5732516 - 5732559
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| |||||||||||||| |||||||||||||||||||||    
T  5732516 cgacacatataattacactaaaatatgtgattttctcaaattat 5732559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 7265599 - 7265642
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||    
T  7265599 cgacacatataattacactgaattatgtgattttctcaaattat 7265642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 9025500 - 9025543
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||    
T  9025500 cgacacatataattacactgaattatgtgattttctcaaattat 9025543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 9195760 - 9195803
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  9195760 cgacacatataattacactaaattatgtcattttctcaaattat 9195803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 423
Target Start/End: Original strand, 31579235 - 31579274
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  31579235 acacataattacactgaattatgtgattttctcaaattat 31579274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 19040404 - 19040362
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
T  19040404 gacacatataattacactgaattatgtgattttctcaaattat 19040362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 421
Target Start/End: Original strand, 11591876 - 11591917
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaatt 421  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  11591876 cgacacatataattacactgaattatgtgattttctcaaatt 11591917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 421
Target Start/End: Complemental strand, 26562742 - 26562701
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaatt 421  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  26562742 cgacacatataattacactgaattatgtgattttctcaaatt 26562701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 21924916 - 21924984
Alignment:
Q  356 ttaggtgtgtcctggtgtcggacac-gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| |||||| |||||| ||||| |||||| ||||||||||| |||||| |||| ||||||||||||    
T  21924916 ttaggcgtgtcccggtgtccgacaccgacacatataattacactgaattatttgatattctcaaattat 21924984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 7938181 - 7938126
Alignment:
Q  369 ggtgtcggacac-gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||||| |||||  |||||||||||||||||| ||||||| |||||||||    
T  7938181 ggtgtcggacaccgacacttataattacactaaattatatgattttttcaaattat 7938126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 9617487 - 9617444
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||    
T  9617487 cgacacatataattacattgaattatgtgattttctcaaattat 9617444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 9629436 - 9629393
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||    
T  9629436 cgacacatataattacattgaattatgtgattttctcaaattat 9629393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 10842585 - 10842542
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| || ||||||||||||||||||||||| |||||||||    
T  10842585 cgacacatatgattacactaaattatgtgattttttcaaattat 10842542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 26178687 - 26178730
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| || ||||||||||||||||||||||| |||||||||    
T  26178687 cgacacatatgattacactaaattatgtgattttatcaaattat 26178730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 30866150 - 30866193
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||    
T  30866150 cgacacatataattacattgaattatgtgattttctcaaattat 30866193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 423
Target Start/End: Original strand, 12235514 - 12235568
Alignment:
Q  369 ggtgtcggacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||||||||||  || |||||||| |||||||| |||||||| ||||||    
T  12235514 ggtgtcggacacgacacctatgattacactgaattatgtcattttctctaattat 12235568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 422
Target Start/End: Original strand, 13360386 - 13360420
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaatta 422  Q
    ||||||||||| |||||||||||||||||||||||    
T  13360386 ataattacactgaattatgtgattttctcaaatta 13360420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 17302399 - 17302357
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| |||||||||| ||||||||||||||||| |||||||    
T  17302399 gacacatataattacacaaaattatgtgattttcttaaattat 17302357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 419
Target Start/End: Original strand, 17327662 - 17327700
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaa 419  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  17327662 gacacatatagttacactaaattatgtgattttctcaaa 17327700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 17841604 - 17841638
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||||    
T  17841604 taattacactaaattatgtgattttttcaaattat 17841638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 25038086 - 25038120
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||| |||||||||||||||    
T  25038086 taattacactaaattatgtaattttctcaaattat 25038120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 25096467 - 25096433
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||| |||||||||||||||||||||||    
T  25096467 taattacactagattatgtgattttctcaaattat 25096433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 7151463 - 7151422
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||||||| |||||||||||||| |||||||||    
T  7151463 acacatataattacacttaattatgtgattttttcaaattat 7151422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 380 - 421
Target Start/End: Complemental strand, 7378032 - 7377991
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaatt 421  Q
    ||||||| ||||||||| | ||||||||||||||||||||||    
T  7378032 cgacacatataattacattgaattatgtgattttctcaaatt 7377991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 423
Target Start/End: Original strand, 10888982 - 10889023
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||| |||||||||||||||||||| |||||||||    
T  10888982 acacatataatcacactaaattatgtgattttatcaaattat 10889023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 423
Target Start/End: Original strand, 27277848 - 27277887
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27277848 acacataattacactaaattatgtgattttctcaaattat 27277887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 32804547 - 32804589
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  32804547 gacacatataattacactaaattatgtgattttctcaaattat 32804589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 49505161 - 49505203
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  49505161 gacacatataattacactaaattatgtgattttctcaaattat 49505203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 382 - 423
Target Start/End: Original strand, 11313808 - 11313849
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  11313808 acacatataattacactaaattatgtgattttctcaaattat 11313849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 423
Target Start/End: Complemental strand, 11252027 - 11251988
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  11252027 acacataattacactgaattatgtgattttctcaaattat 11251988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 15314884 - 15314924
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaatta 422  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  15314884 acacatataattacactaaattatgtgattttttcaaatta 15314924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 384 - 420
Target Start/End: Complemental strand, 25064958 - 25064922
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaat 420  Q
    |||||||||||||||||||||||||||||| ||||||    
T  25064958 acacataattacactaaattatgtgattttttcaaat 25064922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 7928503 - 7928460
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| |||||||||||||| |||||||||    
T  7928503 cgacacatataattacactgaattatgtgattttttcaaattat 7928460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 8789556 - 8789599
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||    
T  8789556 cgacacatataattacacggaattatgtgattttctcaaattat 8789599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 11665997 - 11665954
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||    
T  11665997 cgacacatataattacactaaattgtgtgattttatcaaattat 11665954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 376 - 423
Target Start/End: Complemental strand, 21211345 - 21211298
Alignment:
Q  376 gacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||| |||||||||||| || ||||| |||||||||||||||    
T  21211345 gacacgacacccataattacactgaactatgtaattttctcaaattat 21211298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 376 - 423
Target Start/End: Original strand, 34307782 - 34307829
Alignment:
Q  376 gacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||  ||||||||||| || |||||||||||||||||||||    
T  34307782 gacacgacacttataattacactgaaatatgtgattttctcaaattat 34307829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 1509583 - 1509549
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||||    
T  1509583 taattacactaaattatgtgattttttcaaattat 1509549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 10268501 - 10268535
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||||    
T  10268501 taattacactaaattatgtgattttttcaaattat 10268535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 419
Target Start/End: Original strand, 48202276 - 48202314
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaa 419  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  48202276 gacacatataattacattaaattatgtgattttctcaaa 48202314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 55401119 - 55401085
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||||    
T  55401119 taattacactaaattatgtgattttttcaaattat 55401085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 423
Target Start/End: Original strand, 16192758 - 16192799
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||||||| |||||||| |||||||||||||||    
T  16192758 acacatataattacactgaattatgttattttctcaaattat 16192799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 24205037 - 24205090
Alignment:
Q  370 gtgtcggacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||||||  |||||||||||  ||||||| |||||||||||||||    
T  24205037 gtgtccgacacgacacttataattacactgtattatgtcattttctcaaattat 24205090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 2620063 - 2620099
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaat 420  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  2620063 acacatagttacacttaattatgtgattttctcaaat 2620099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 25093555 - 25093515
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaat 420  Q
    ||||||| ||||||||||| |||| ||||||||||||||||    
T  25093555 cgacacatataattacactgaattgtgtgattttctcaaat 25093515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 12443442 - 12443509
Alignment:
Q  356 ttaggtgtgtcctggtgtcggacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||||  |||||| |||||| |||| | ||||||||| ||||||||||||||||||||||||    
T  12443442 ttaggtgtgtctcggtgtccgacacgtcacatacaattacactgaattatgtgattttctcaaattat 12443509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 1864886 - 1864929
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||    
T  1864886 cgacacatataattacactgaattatgtgattttctcaaattat 1864929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 14332656 - 14332691
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||||||||||||||    
T  14332656 ataattacactaaattatgtgattttctcaaattat 14332691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 44482283 - 44482240
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||    
T  44482283 cgacacatataattacactgaattatgtgattttctcaaattat 44482240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 7918218 - 7918260
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
T  7918218 gacacatataattacactgaattatgtgattttctcaaattat 7918260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 25361938 - 25361896
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
T  25361938 gacacatataattacactgaattatgtgattttctcaaattat 25361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 34712390 - 34712432
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  34712390 gacacatataattacactaaattatgttattttctcaaattat 34712432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 382 - 423
Target Start/End: Original strand, 25098563 - 25098604
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  25098563 acacatataattacactgaattatgtgattttctcaaattat 25098604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 421
Target Start/End: Complemental strand, 25272527 - 25272494
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaatt 421  Q
    ||||||||||||||||||||||||||||||||||    
T  25272527 ataattacactaaattatgtgattttctcaaatt 25272494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 19324612 - 19324572
Alignment:
Q  383 cacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  19324612 cacatataattacactgaattatgtgattttctcaaattat 19324572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 12713341 - 12713376
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||||||||||||||||||||| |||||||    
T  12713341 ataattacactaaattatgtgattttcttaaattat 12713376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 12717432 - 12717467
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||||||||||||||||||||| |||||||    
T  12717432 ataattacactaaattatgtgattttcttaaattat 12717467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 20131989 - 20132024
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||| |||||||||||||||||||||||||||    
T  20131989 ataattaccctaaattatgtgattttctcaaattat 20132024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 384 - 423
Target Start/End: Original strand, 25452158 - 25452197
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  25452158 acacataattacactgaattatgagattttctcaaattat 25452197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 34298481 - 34298446
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||| ||||||||||||||||||||||||    
T  34298481 ataattacactgaattatgtgattttctcaaattat 34298446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 36878506 - 36878471
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36878506 ataattacactgaattatgtgattttctcaaattat 36878471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 39953152 - 39953195
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| | |||||||||||||||||||||||||| |||||||    
T  39953152 cgacacatacaattacactaaattatgtgattttctaaaattat 39953195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 40181916 - 40181881
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||| ||||||||||||||||||||||||    
T  40181916 ataattacactgaattatgtgattttctcaaattat 40181881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 10233305 - 10233263
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||    
T  10233305 gacacatataattacactgaattatgtgattttctcaatttat 10233263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 16164322 - 16164364
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||| |||||||||||||||| |||||||||    
T  16164322 gacacatataattacattaaattatgtgattttttcaaattat 16164364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 17705588 - 17705626
Alignment:
Q  376 gacacgacacacataattacactaaattatgtgattttc 414  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  17705588 gacacgacacatataattacactgaattatgtgattttc 17705626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 22515902 - 22515936
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||||    
T  22515902 taattacactaaattatgtgattttttcaaattat 22515936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 22881631 - 22881665
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||||    
T  22881631 taattacactaaattatgtgattttttcaaattat 22881665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 31015087 - 31015053
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||| ||||||||||||||||||||||||    
T  31015087 taattacactgaattatgtgattttctcaaattat 31015053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 418
Target Start/End: Complemental strand, 34371766 - 34371728
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaa 418  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  34371766 cgacacatataattacactgaattatgtgattttctcaa 34371728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 37055871 - 37055905
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||| |||||||||||||||    
T  37055871 taattacactaaattatgtaattttctcaaattat 37055905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 41877485 - 41877519
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||| |||||||||||||||    
T  41877485 taattacactaaattatgtaattttctcaaattat 41877519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 422
Target Start/End: Original strand, 43492500 - 43492542
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaatta 422  Q
    ||||||||||||||||||  ||||| |||||||||||||||||    
T  43492500 cgacacacataattacaccgaattacgtgattttctcaaatta 43492542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 6427401 - 6427360
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||||| | ||||||||||||||||||||||||    
T  6427401 acacatataattacattgaattatgtgattttctcaaattat 6427360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 390 - 423
Target Start/End: Complemental strand, 15323206 - 15323173
Alignment:
Q  390 aattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||||||||||||||||| |||||||||    
T  15323206 aattacactaaattatgtgattttttcaaattat 15323173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 22794074 - 22794127
Alignment:
Q  370 gtgtcggacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||  |||||||||||  ||||||| ||||| |||||||||    
T  22794074 gtgtcggacacgacacctataattacactgtattatgtcattttttcaaattat 22794127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 17831536 - 17831580
Alignment:
Q  379 acgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||| || |||||||| ||| ||||||||||||||||||||    
T  17831536 acgacacatatgattacactgaataatgtgattttctcaaattat 17831580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 29229515 - 29229471
Alignment:
Q  380 cgacacacataattac-actaaattatgtgattttctcaaattat 423  Q
    ||||||| |||||||| ||||||| ||||||||||||||||||||    
T  29229515 cgacacatataattaccactaaatcatgtgattttctcaaattat 29229471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 415
Target Start/End: Complemental strand, 30749906 - 30749858
Alignment:
Q  368 tggtgtcggacac-gacacacataattacactaaattatgtgattttct 415  Q
    ||||||| ||||| |||||| ||||||||||| ||||||||||||||||    
T  30749906 tggtgtccgacaccgacacatataattacactgaattatgtgattttct 30749858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 415
Target Start/End: Complemental strand, 30771357 - 30771309
Alignment:
Q  368 tggtgtcggacac-gacacacataattacactaaattatgtgattttct 415  Q
    ||||||| ||||| |||||| ||||||||||| ||||||||||||||||    
T  30771357 tggtgtccgacaccgacacatataattacactgaattatgtgattttct 30771309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 39101187 - 39101231
Alignment:
Q  379 acgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||  ||||||||||| |||||||| |||||||||||||||    
T  39101187 acgacacctataattacacttaattatgttattttctcaaattat 39101231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 42004964 - 42004996
Alignment:
Q  391 attacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||| |||||||||||||||    
T  42004964 attacactaaattatgtcattttctcaaattat 42004996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 3721146 - 3721103
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||    
T  3721146 cgacacatataattatactaaattatgtgattttctcaaattat 3721103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 7328697 - 7328740
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  7328697 cgacacatataattacactaaattatgttattttctcaaattat 7328740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 423
Target Start/End: Complemental strand, 12278900 - 12278845
Alignment:
Q  368 tggtgtcggacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| ||||||||||| |||||||| ||||||| |||||||    
T  12278900 tggtgtccgacacgacacatataattacactgaattatgtcattttcttaaattat 12278845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 15902875 - 15902832
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| |||||||||||||||||||||||||| |||||||||    
T  15902875 cgacacatataattacactaaattatgtgattttatcaaattat 15902832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 423
Target Start/End: Original strand, 29787379 - 29787418
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  29787379 acacataattacactgaattatgtgattttctcaaattat 29787418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 2424661 - 2424624
Alignment:
Q  386 acataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  2424661 acataattacactgaattatgtgattttctcaaattat 2424624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 5233680 - 5233639
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  5233680 acacatataattacactagattatgtgattttctcaaattat 5233639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 16341546 - 16341506
Alignment:
Q  383 cacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  16341546 cacatataattacacttaattatgtgattttctcaaattat 16341506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 22602716 - 22602756
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaat 420  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  22602716 cgacacatataattacactgaattatgtgattttctcaaat 22602756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 37870946 - 37870906
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaat 420  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  37870946 cgacacacataattacacgaaatcatgtgattttctcaaat 37870906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 1433507 - 1433464
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| |||||||||| |||| ||||||||||||||||||||    
T  1433507 cgacacatataattacaccaaatgatgtgattttctcaaattat 1433464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 2948736 - 2948693
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||    
T  2948736 cgacacatataattacactaaattacgtgattttctaaaattat 2948693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 9482987 - 9482944
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||    
T  9482987 cgacacatataattacactgaattgtgtgattttctcaaattat 9482944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 384 - 423
Target Start/End: Complemental strand, 12289163 - 12289124
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  12289163 acacataattccactgaattatgtgattttctcaaattat 12289124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 415
Target Start/End: Original strand, 18213039 - 18213074
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttct 415  Q
    ||||||| ||||||||||||||||||||||||||||    
T  18213039 cgacacatataattacactaaattatgtgattttct 18213074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 20549844 - 20549801
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||    
T  20549844 cgacacatataattacactgaattacgtgattttctcaaattat 20549801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 27093427 - 27093462
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||||||||||||||||||||| |||||||    
T  27093427 ataattacactaaattatgtgattttcttaaattat 27093462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 27184874 - 27184839
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||||||||||||||||||||| |||||||    
T  27184874 ataattacactaaattatgtgattttcttaaattat 27184839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 384 - 423
Target Start/End: Complemental strand, 30731086 - 30731047
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  30731086 acacacaattacactgaattatgtgattttctcaaattat 30731047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 35493458 - 35493423
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||| |||||||||||||||||||||||||||    
T  35493458 ataattaccctaaattatgtgattttctcaaattat 35493423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 5548728 - 5548686
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||||| |||||| |||||||||||||||||    
T  5548728 gacacatataattacactgaattatttgattttctcaaattat 5548686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 9408349 - 9408383
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||||    
T  9408349 taattacactaaattatgtgattttttcaaattat 9408383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 17851483 - 17851441
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||||| |||||||||||||||| |||||||    
T  17851483 gacacatataattacactgaattatgtgattttctaaaattat 17851441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 22868094 - 22868052
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||||| |||||||||||||||||| |||||    
T  22868094 gacacatataattacactgaattatgtgattttctcatattat 22868052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 32308172 - 32308130
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| | ||||||||| ||||||||||||||||||||||||    
T  32308172 gacacatacaattacactgaattatgtgattttctcaaattat 32308130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 8160467 - 8160426
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| |||||||||||||||||||| ||||||| |||||||    
T  8160467 acacatataattacactaaattatgtaattttcttaaattat 8160426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 14729748 - 14729711
Alignment:
Q  386 acataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  14729748 acataattacactgaattacgtgattttctcaaattat 14729711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 38143274 - 38143233
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||||| |||||||||||||||| |||||||||    
T  38143274 acacatataattacattaaattatgtgattttttcaaattat 38143233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 423
Target Start/End: Original strand, 9756984 - 9757035
Alignment:
Q  371 tgtcggacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||| | ||||||||||| ||| |||| |||||||||||||||||||    
T  9756984 tgtcggacacta-acacataattaaactgaattgtgtgattttctcaaattat 9757035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 17307944 - 17307904
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaatta 422  Q
    ||||| ||||||||||| |||||||| ||||||||||||||    
T  17307944 acacatataattacactgaattatgttattttctcaaatta 17307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 423
Target Start/End: Complemental strand, 28155648 - 28155580
Alignment:
Q  356 ttaggtgtgtcctggtgtcggacac-gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||||||||| ||||| |||||   |||||||||  |||||||| |||||||||||||||    
T  28155648 ttaggcgtgtcctggtgtccgacaccgacacttgtaattacaccgaattatgtaattttctcaaattat 28155580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 14873570 - 14873527
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  14873570 cgacacatataattacactaaattatgtgcttttctcaaattat 14873527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 16203801 - 16203844
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||    
T  16203801 cgacacatataattacactaaattatgagattttctcaaattat 16203844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 35017082 - 35017047
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||||||||||||||    
T  35017082 ataattacactaaattatgtgattttctcaaattat 35017047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 36838596 - 36838553
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  36838596 cgacacatataattacactaaattatgtaattttctcaaattat 36838553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 27144515 - 27144473
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||||||||||||||||||| ||||||||||    
T  27144515 gacacatataattacactaaattatgtgatttcctcaaattat 27144473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 382 - 423
Target Start/End: Original strand, 6471897 - 6471938
Alignment:
Q  382 acacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  6471897 acacatataattacactgaattatgtgattttctcaaattat 6471938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 422
Target Start/End: Complemental strand, 28473989 - 28473944
Alignment:
Q  377 acacgacacacataattacactaaattatgtgattttctcaaatta 422  Q
    |||| ||||||||||||||||||||||||  |||||||||||||||    
T  28473989 acaccacacacataattacactaaattatacgattttctcaaatta 28473944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 41091263 - 41091303
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaat 420  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  41091263 cgacacatataattacactgaattatgtgattttctcaaat 41091303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 3966556 - 3966513
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||    
T  3966556 cgacacatataattacactgaattgtgtgattttctcaaattat 3966513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 376 - 423
Target Start/End: Original strand, 5467980 - 5468027
Alignment:
Q  376 gacacgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||  ||||||||||| |||||||||||||| |||||||||    
T  5467980 gacacgacacctataattacactgaattatgtgattttatcaaattat 5468027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 11685992 - 11685949
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||||||||||| || |||||||||||||    
T  11685992 cgacacatataattacactaaattatgcgactttctcaaattat 11685949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 12927699 - 12927664
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||||||||||| |||||||||||||||||    
T  12927699 ataattacactaaattatatgattttctcaaattat 12927664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 18421847 - 18421890
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| |||||||||||  |||||||||||||||||||||||    
T  18421847 cgacacatataattacactggattatgtgattttctcaaattat 18421890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 19429485 - 19429442
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  19429485 cgacacagatatttacactaagttatgtgattttctcaaattat 19429442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 23012414 - 23012457
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||| |||||||| |||||||||||||||||    
T  23012414 cgacacatataattacattaaattatatgattttctcaaattat 23012457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 383 - 422
Target Start/End: Original strand, 24273039 - 24273078
Alignment:
Q  383 cacacataattacactaaattatgtgattttctcaaatta 422  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  24273039 cacatataattacactgaattatgtgattttctcaaatta 24273078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 383 - 422
Target Start/End: Complemental strand, 24389175 - 24389136
Alignment:
Q  383 cacacataattacactaaattatgtgattttctcaaatta 422  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  24389175 cacatataattacactgaattatgtgattttctcaaatta 24389136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 28262410 - 28262445
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||| |||||||||||||||||||||||||||    
T  28262410 ataattaccctaaattatgtgattttctcaaattat 28262445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 28588688 - 28588723
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||| ||||||||||||||||||||||||    
T  28588688 ataattacactgaattatgtgattttctcaaattat 28588723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 30502394 - 30502437
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||    
T  30502394 cgacacatataattacactgaattaagtgattttctcaaattat 30502437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 30542737 - 30542780
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||    
T  30542737 cgacacatataattacactgaattaagtgattttctcaaattat 30542780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 14674313 - 14674279
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||||    
T  14674313 taattacactaaattatgtgattttttcaaattat 14674279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 19579745 - 19579711
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||| |||||||||||||||||||||||||||||    
T  19579745 taattgcactaaattatgtgattttctcaaattat 19579711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 390 - 423
Target Start/End: Complemental strand, 19438386 - 19438353
Alignment:
Q  390 aattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||| ||||||||||||||||||||||||    
T  19438386 aattacactgaattatgtgattttctcaaattat 19438353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 2577197 - 2577229
Alignment:
Q  391 attacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||| |||||||||||||||    
T  2577197 attacactaaattatgtcattttctcaaattat 2577229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 17482484 - 17482524
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaat 420  Q
    ||||||||||||||||| ||||| |||| ||||||||||||    
T  17482484 cgacacacataattacattaaatcatgtcattttctcaaat 17482524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 23016003 - 23016035
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaat 420  Q
    ||||||||||| |||||||||||||||||||||    
T  23016003 ataattacactgaattatgtgattttctcaaat 23016035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 18276574 - 18276531
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  18276574 cgacacacataattacactgaattaagtgattttctcaaattat 18276531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 30527601 - 30527644
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| |||||||||||||||||| |||||||||||||||||    
T  30527601 cgacacatataattacactaaattatatgattttctcaaattat 30527644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 423
Target Start/End: Original strand, 36409637 - 36409676
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  36409637 acacataattacactaaattatgtgattttttcaaattat 36409676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 21616822 - 21616772
Alignment:
Q  374 cggacacg-acacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||||||||||    
T  21616822 cggacacgtacacatataattacactgaattatgtgattttctcaaattat 21616772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 423
Target Start/End: Original strand, 21782829 - 21782867
Alignment:
Q  385 cacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  21782829 cacataattacactgaattatgtgattttctcaaattat 21782867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 2665897 - 2665937
Alignment:
Q  383 cacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||| |||||||||||||||||||||||||||| |||||||    
T  2665897 cacatataattacactaaattatgtgattttctaaaattat 2665937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 36281727 - 36281695
Alignment:
Q  391 attacactaaattatgtgattttctcaaattat 423  Q
    |||||||||||||||||||||||||||||||||    
T  36281727 attacactaaattatgtgattttctcaaattat 36281695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 384 - 423
Target Start/End: Complemental strand, 2331843 - 2331804
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  2331843 acacataaatacactgaattatgtgattttctcaaattat 2331804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 5367245 - 5367202
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||||    
T  5367245 cgacacatataattacactgaattatgtgatttcctcaaattat 5367202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 23718079 - 23718036
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||    
T  23718079 cgacacatataattacactgaattatgtgactttctcaaattat 23718036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 24105751 - 24105708
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||    
T  24105751 cgacacatataattacactgaattatgtgactttctcaaattat 24105708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 384 - 423
Target Start/End: Complemental strand, 28412399 - 28412360
Alignment:
Q  384 acacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  28412399 acacataattacactgaattatgtgattttatcaaattat 28412360  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 415
Target Start/End: Original strand, 34784988 - 34785023
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttct 415  Q
    ||||||| ||||||||||||||||||||||||||||    
T  34784988 cgacacatataattacactaaattatgtgattttct 34785023  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 35191593 - 35191628
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    |||||||| |||||||||||||||||||||||||||    
T  35191593 ataattaccctaaattatgtgattttctcaaattat 35191628  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 37411250 - 37411293
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||||    
T  37411250 cgacacatataatcacactgaattatgtgattttctcaaattat 37411293  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 44860373 - 44860330
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||    
T  44860373 cgacacatataattacactgaattatgcgattttctcaaattat 44860330  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 415
Target Start/End: Original strand, 20922935 - 20922969
Alignment:
Q  381 gacacacataattacactaaattatgtgattttct 415  Q
    |||||| ||||||||||||||||||||||||||||    
T  20922935 gacacatataattacactaaattatgtgattttct 20922969  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 35449565 - 35449523
Alignment:
Q  381 gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| ||||||||||| |||| |||||||||||||||||||    
T  35449565 gacacatataattacactgaattctgtgattttctcaaattat 35449523  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 24011078 - 24011046
Alignment:
Q  391 attacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||| |||||||||||||||    
T  24011078 attacactaaattatgtcattttctcaaattat 24011046  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 38355893 - 38355933
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaat 420  Q
    ||||||| ||||| ||||| |||||||||||||||||||||    
T  38355893 cgacacatataatcacactgaattatgtgattttctcaaat 38355933  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 42832257 - 42832325
Alignment:
Q  356 ttaggtgtgtcctggtgtcggacac-gacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| |||||| || ||||||||| |||||  ||||||||||| || ||||| |||||||||||||||    
T  42832257 ttaggcgtgtcccggagtcggacaccgacacttataattacactgaaatatgtaattttctcaaattat 42832325  T

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Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 135288 - 135361
Alignment:
Q  356 ttaggtgtgtcctggtgtcggacacgacac------acataattacactaaattatgtgattttctcaaattat 423  Q
    ||||| ||||||||||||||||||||||||      | ||||||||||  ||||||||||||||||||||||||    
T  135288 ttaggcgtgtcctggtgtcggacacgacaccgacacatataattacacagaattatgtgattttctcaaattat 135361  T

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Target: scaffold0123 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 421
Target Start/End: Original strand, 44531 - 44572
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaatt 421  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  44531 cgacacatataattacactgaattatgtgattttctcaaatt 44572  T

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Target: scaffold0236 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 25782 - 25817
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||||||| ||||||    
T  25782 ataattacactaaattatgtgattttctctaattat 25817  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 53225 - 53190
Alignment:
Q  388 ataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||| ||||||||||||||||||||||||    
T  53225 ataattacactgaattatgtgattttctcaaattat 53190  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Original strand, 9753 - 9796
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||    
T  9753 cgacacatataattacactgaattaagtgattttctcaaattat 9796  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 241647 - 241604
Alignment:
Q  380 cgacacacataattacactaaattatgtgattttctcaaattat 423  Q
    |||||| |||||||||||||||||||||||||||  ||||||||    
T  241647 cgacactcataattacactaaattatgtgatttttccaaattat 241604  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 17764 - 17798
Alignment:
Q  389 taattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||||||||||||||||||| |||||||||    
T  17764 taattacactaaattatgtgattttttcaaattat 17798  T

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Target: scaffold0990 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 423
Target Start/End: Complemental strand, 1533 - 1497
Alignment:
Q  387 cataattacactaaattatgtgattttctcaaattat 423  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  1533 cataattaccctaaattatgtgattttctcacattat 1497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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