View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5419_low_3 (Length: 396)
Name: NF5419_low_3
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5419_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 371
Target Start/End: Original strand, 10344834 - 10345192
Alignment:
| Q |
14 |
tacttacttaaatgcatttggttggtttatgtgctttatgtgtgcttatatgtgaataaacatgatatgctgaattgtgtgcctagttggggttatagcc |
113 |
Q |
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| T |
10344834 |
tacttacttaaatgcatttggttggtttatgtgctttatgtgtgcttatatgtgaataaacatgatatgctgaattgtgtgcctagttggggttatagcc |
10344933 |
T |
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| Q |
114 |
attctatgttgattgcaccaggtatggttaactagtatggacccacctaaattctacgaaaaatg-attgagtcggtaacgttttgtgatgtcccataag |
212 |
Q |
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| T |
10344934 |
attctatgttgattgcacgaggtatggttaactagtatggacccacctaaattctacgaaaaatgtattgagtcggtaacgtgttgtgatgtcccatgag |
10345033 |
T |
|
| Q |
213 |
ttggtgtctactctatgatagaatgcacttccctttgttgtggatggctatcaaagtggttaattatggaatatataaaagcctaggataggcgtcacat |
312 |
Q |
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| T |
10345034 |
ttggtgtctactctatgataggatgcacttccctttgttgtggatggctatcaaagtggttaattatggaatatataaaaccctaggataggcgtcacat |
10345133 |
T |
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| Q |
313 |
tcatgtagaatatgtattttaggctaatttatgtatcatcacaatttatagtgtatttt |
371 |
Q |
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| T |
10345134 |
tcatgtagaatatgtattttaggctaatttatgtatcatcacaatttatagtgtatttt |
10345192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 115 - 380
Target Start/End: Original strand, 10346965 - 10347237
Alignment:
| Q |
115 |
ttctatgttgattgcaccaggtatggttaactagtatggacccacctaaattctacgaaa-aatgattgagtcggtaacgttttgtgatgtcccataagt |
213 |
Q |
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| T |
10346965 |
ttctatgttgattgcacaggatatggttaattagaatgaacccacctaaattctacaaaagaattattgagtcagcgaggcgttgtgatgtcctatcagt |
10347064 |
T |
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| Q |
214 |
tggtgtctactctatgatagaatgcacttccctttgttgtggatggctatcaaagtggttaattatggaatatat-------aaaagcctaggataggcg |
306 |
Q |
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| T |
10347065 |
tggtgtctagtttgtgataggctgcacttcccttttttgcgaaagtatatcaaagtggttaattacggaatatatgcatgtgaatagcctaggataggca |
10347164 |
T |
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| Q |
307 |
tcacattcatgtagaatatgtattttaggctaatttatgtatcatcacaatttatagtgtatttttgtacatat |
380 |
Q |
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| T |
10347165 |
tcacactcatgtagagtatgcatttaaggctaa-ttatgcatcatcacattttattctgtatttttgtacatat |
10347237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 10346803 - 10346899
Alignment:
| Q |
14 |
tacttacttaaatgcatttggttggtttatgtgctt-tatgtgtgcttatatgtgaataaacatgatatgctgaattgtgtgcctagttggggttata |
110 |
Q |
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| T |
10346803 |
tacttacttaaatgcatt-ggttggtttatgtgcttgtatgtgtgcttatccgtgaacagatatgatacgttgaattgtatgctaagttggggttata |
10346899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 16585696 - 16585751
Alignment:
| Q |
34 |
gttggtttatgtgctt-tatgtgtgcttatatgtgaataaacatgatatgctgaat |
88 |
Q |
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| T |
16585696 |
gttgatttatgtgcttatatgtgtgcttgtttgtgaataaacatgatatgctgaat |
16585751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 3385269 - 3385217
Alignment:
| Q |
31 |
ttggttggtttatgtgctt-tatgtgtgcttatatgtgaataaacatgatatg |
82 |
Q |
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| T |
3385269 |
ttggttgatttatgtgcttgtatgtgtgcttgtttgtgaataaacatcatatg |
3385217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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