View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5419_low_4 (Length: 339)
Name: NF5419_low_4
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5419_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 4599310 - 4599070
Alignment:
| Q |
11 |
ttggagcatgggtgagtaggactctcttgagattattgttatatattatttgatggaaacttctatggtgtactcgcaaattaagttgtaccagtactct |
110 |
Q |
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| T |
4599310 |
ttggaccaagggtgagtaagactctcttgcaattattgttatatattatttgatggaaacttctatgatgtactcgcaaattaagttgtaccagtactct |
4599211 |
T |
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| Q |
111 |
taactaaacaatatgtgcaggctgcgacttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctac |
210 |
Q |
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| T |
4599210 |
taactaaacaatatgtgcaggctgcaacttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctac |
4599111 |
T |
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| Q |
211 |
gattatcataacagaaaatggtaatatttatattacattct |
251 |
Q |
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| T |
4599110 |
gattatcataacagaaaatggtaatatttatattacattct |
4599070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 4623637 - 4623497
Alignment:
| Q |
111 |
taactaaacaatatgtgcaggctgcgacttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctac |
210 |
Q |
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| T |
4623637 |
taactaaacaatatgtgcaggctgcaacttggttatatgtttgtccaaagggtattcaggacctactgttgtacacaaaggaaaagtataacaatcctac |
4623538 |
T |
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| Q |
211 |
gattatcataacagaaaatggtaatatttatattacattct |
251 |
Q |
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| T |
4623537 |
gattatcataacagaaaatggtaatatttatattacattct |
4623497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 4623712 - 4623649
Alignment:
| Q |
1 |
gggacatacattggagcatgggtgagtaggactctcttgagattattgttatatattatttgat |
64 |
Q |
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| T |
4623712 |
gggacatacattggagcatgggtgagtaagactctcttgagattattgttacatcttatttgat |
4623649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 25016481 - 25016383
Alignment:
| Q |
138 |
cttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggtaata |
236 |
Q |
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| T |
25016481 |
cttggctatttgtttatccaagggggattcaggaactactgttgcacacaaagacaaagtataataatccattgatttacataacagaaaatggtaata |
25016383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 25037744 - 25037649
Alignment:
| Q |
138 |
cttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggta |
233 |
Q |
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| T |
25037744 |
cttggctatttgtttatccaagggggattcaagaactactgttgtacacaaagacaaagtataacaaccctgtgatttacataaccgaaaatggta |
25037649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 18805377 - 18805481
Alignment:
| Q |
139 |
ttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggtaatatt |
238 |
Q |
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|||| ||||||||| ||||||||||||||| || ||||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||| | |
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| T |
18805377 |
ttggctatatgtttatccaaaggggattcaagagctactgttgtacataaagaaaaagtataacaatcctgttatttacataacagaaaatggtaatact |
18805476 |
T |
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| Q |
239 |
tatat |
243 |
Q |
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||||| |
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| T |
18805477 |
tatat |
18805481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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