View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5419_low_6 (Length: 266)
Name: NF5419_low_6
Description: NF5419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5419_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 8744758 - 8744511
Alignment:
| Q |
1 |
agaatgtaaataagagaaggaaaaagaggatgatgatagctatgagaagaacaaagaaaacgaatgaggcatggagaagggcaaggagaatgagatctat |
100 |
Q |
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| T |
8744758 |
agaatgtaagtaagagaaggaaaaagaggatgatgatagctatgagaagaacaaagaaaacgaatgaggcatggagaagggcaaggagaatgagatctat |
8744659 |
T |
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| Q |
101 |
gttttggaacatattgaatgtgattttgatgaaacaaagtcatgttggttgttaaagtaaggaaattaaatgagaaagtgcatgaagctaatgaactcga |
200 |
Q |
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| T |
8744658 |
gttttggaacatattgaatgtgattttgatgaaacaaagtcatgttggttgttaaagtaaggaaattaaatgagaaagtgcatgaagctaatgaactcga |
8744559 |
T |
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| Q |
201 |
acatattctatacttccgataacacatttaactactttttgataaagg |
248 |
Q |
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| T |
8744558 |
acatattctatacttccgataacacatttaactactttttgataaagg |
8744511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 8753994 - 8753889
Alignment:
| Q |
23 |
aaagaggatgatgatagctatgagaagaacaaagaaaacgaatgaggcatggagaagggcaaggagaatgagatctatgttttggaacatattgaatgtg |
122 |
Q |
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|||||| |||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||||||||||||| || |||||||||||||||| ||||| |
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| T |
8753994 |
aaagagaatgatgatagctatgagaagaaaaaa-aaaacgaatgaggcatgaacaagggcaaggagaatgagatgtaagttttggaacatattgcatgtg |
8753896 |
T |
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| Q |
123 |
attttga |
129 |
Q |
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| T |
8753895 |
actttga |
8753889 |
T |
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