View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5420_low_1 (Length: 762)
Name: NF5420_low_1
Description: NF5420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5420_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 368 - 744
Target Start/End: Original strand, 19890019 - 19890401
Alignment:
| Q |
368 |
tgtttatattccacatcaaagttgactacttgatcaaagttgcctacttggtcatat------tgattgcgttagaaaaggttgtgtgcagaaaagacag |
461 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19890019 |
tgtttattttccacatcaaagttgactacttgatcaaagttgcctacttggtcatataaatattgattgcgttagaaaaggttgtgtgcagaaaagacag |
19890118 |
T |
|
| Q |
462 |
cacaatcacccttgtttcttttgttgtgtaattttctttcaataagaaagtgctattttggtgttgttttcctctcaatatggtggtaaaaaacacaaat |
561 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19890119 |
cacaatcacccttgtttcttttgttgtgtaattctctttcaataagaaagtgctattttggtgttgttttcctctcaatatggtggtaaaaaacacaaat |
19890218 |
T |
|
| Q |
562 |
cagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaagctggtgtcagaggtttggtggagcatgggg |
661 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19890219 |
cagttagaggaatctactaattccacttatgatagaaaaacagaagtgaaaaattttgatgattcaaaagctggtgtcagaggtttggtggagcatgggg |
19890318 |
T |
|
| Q |
662 |
tgtcaaagatcccgcgcatttttcatactggtaagttggacatcggtgaaaacttggctggtgattctaaattgagtgttccc |
744 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
19890319 |
tgtcaaagatcccgcgcatttttcataccggtaagttggatatcggtgaaaactcggctagtgattctaaattgagtgttccc |
19890401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 192 - 350
Target Start/End: Original strand, 19889874 - 19890032
Alignment:
| Q |
192 |
tgaacgaatataaaaaatcaattttgtctcgtaaattatgagatcggattagagatattgtttaatttctaataaagacacactttgaataaaactttca |
291 |
Q |
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| T |
19889874 |
tgaacgaatataaaaaatcaattttgtcttgtaaattatgagatcggattagatatattgtttaatttctaataaagacacactttgaataaaactttca |
19889973 |
T |
|
| Q |
292 |
catgtttattatgtcttttatgaattggggtcctccgttattttatgtttatattccac |
350 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
19889974 |
catgtttattatgtctttaatgaattggggtcctccgttattttatgtttattttccac |
19890032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 19889683 - 19889777
Alignment:
| Q |
1 |
ttgttcattagtccttgtatttaattaattttatcaagtatttctgaattcaaaattaaatcattactctttctagtctcatttataagacttct |
95 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19889683 |
ttgttcatcagtccttgtatttaattaattttatcaagtatttcccaattcaaaattaaattattactctttctagtctcatttataagacttct |
19889777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 520 - 654
Target Start/End: Original strand, 19844322 - 19844454
Alignment:
| Q |
520 |
tggtgttgttttcctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagcttttg |
619 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |||| || |||| |||| ||||||||||||||||||||| | | |||||||||||||||| |
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| T |
19844322 |
tggtgttgttt--ctctcaatatggtggtaaaaaactcaaaccaagtagaaaaatccactaattccacttatgatagatacaatgaagtgaaagcttttg |
19844419 |
T |
|
| Q |
620 |
atgattcaaaagctggtgtcagaggtttggtggag |
654 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |
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| T |
19844420 |
atgattcaaaagctggtgtgagaggtttggtggag |
19844454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 515 - 680
Target Start/End: Original strand, 29462560 - 29462725
Alignment:
| Q |
515 |
tattttggtgttgttttcctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagc |
614 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||||||| ||||| |||| || ||| ||||||| | | ||| ||||||||||||| || | ||||| ||||| |
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| T |
29462560 |
tattctggtgttgtttgcctatcaatatggtggtagaaaactcaaaccaattaaaggaatccagtgatttcacttatgatagagaagccgaagttaaagc |
29462659 |
T |
|
| Q |
615 |
ttttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcat |
680 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| || ||||| |
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| T |
29462660 |
ttttgatgattcaaaagttggtgtcaaaggtttggtggattctggggtgtcaaagattccacgcat |
29462725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 505 - 743
Target Start/End: Complemental strand, 49465631 - 49465393
Alignment:
| Q |
505 |
aagaaagtgctattttggtgttgttttcctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacgg |
604 |
Q |
| |
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|||| ||||||||| |||| |||||| | |||||| ||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||| | | |
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| T |
49465631 |
aagacagtgctattctggttttgtttccttctcaacatggtggtaaaaaacacaaatcaattagaggaagccactgattccacttatgatagaaaagctg |
49465532 |
T |
|
| Q |
605 |
aagtgaaagcttttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcatttttcatactggtaagttggacat |
704 |
Q |
| |
|
||||||||||||||||||||||| ||| || |||| |||||||| ||| |||||| ||||||||||| ||| |||| ||| | || ||||||||||| |
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| T |
49465531 |
aagtgaaagcttttgatgattcacgagcaggcgtcaatggtttggttgagtctggggtttcaaagatcccacgctttttccatgccgggaagttggacat |
49465432 |
T |
|
| Q |
705 |
cggtgaaaacttggctggtgattctaaattgagtgttcc |
743 |
Q |
| |
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||||||||||| || |||| || || ||||||||||| |
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| T |
49465431 |
cggtgaaaactcaacttgtgactccaagttgagtgttcc |
49465393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 581 - 680
Target Start/End: Original strand, 8348970 - 8349069
Alignment:
| Q |
581 |
attccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcat |
680 |
Q |
| |
|
||||||| ||||||||||| | ||||||||||||||||||||||||||| |||||| |||||| | |||||| |||||| |||||||||| ||||| |
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| T |
8348970 |
attccacatatgatagaaatgctgaagtgaaagcttttgatgattcaaaacttggtgttagaggtcttatggagcgtggggtaacaaagatcccacgcat |
8349069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 49465915 - 49465849
Alignment:
| Q |
283 |
aaactttcacatgtttattatgtcttttatgaattggggtcctccgttattttatgtttatattccac |
350 |
Q |
| |
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||||| |||| |||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
49465915 |
aaactatcacgtgtttattatgtctttaatgaattggggtcct-ctttattttatgtttatattccac |
49465849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 532 - 701
Target Start/End: Original strand, 1092841 - 1093010
Alignment:
| Q |
532 |
cctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaag |
631 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || ||||||||| | ||||||||||||||||||||| || | |||||||||||||||||||||||||||| |
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|
| T |
1092841 |
cctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaag |
1092940 |
T |
|
| Q |
632 |
ctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcatttttcatactggtaagttgga |
701 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| || || || ||||| || |||||||| ||| |||| |
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| T |
1092941 |
taggtgtcaaaggtttggtggagtctggggtgtcgaaaattccacgcatgttccatactgggaagatgga |
1093010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 581 - 680
Target Start/End: Complemental strand, 25225169 - 25225070
Alignment:
| Q |
581 |
attccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcat |
680 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||| |||||| | |||||| ||||||| |||||||||||||||| |
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|
| T |
25225169 |
attccacatatgatagaaatgttgaagtgaaagcttttgatgattcgaaacttggtgttagaggtcttatggagcgtggggtgacaaagatcccgcgcat |
25225070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 581 - 680
Target Start/End: Original strand, 26168213 - 26168312
Alignment:
| Q |
581 |
attccacttatgatagaaaaacggaagtgaaagcttttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcat |
680 |
Q |
| |
|
||||||| ||||||||||| ||| |||||| |||||||||||||||| |||||| |||||| | |||||| ||||||| |||||||||| ||||| |
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|
| T |
26168213 |
attccacatatgatagaaatgatgaattgaaagtttttgatgattcaaaacttggtgtaagaggtcttatggagcgtggggtgacaaagatcccacgcat |
26168312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 604 - 680
Target Start/End: Original strand, 26395847 - 26395923
Alignment:
| Q |
604 |
gaagtgaaagcttttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcat |
680 |
Q |
| |
|
||||||||||||||||| || ||||||| |||||| |||||| | |||||| |||||| |||||||||| ||||| |
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|
| T |
26395847 |
gaagtgaaagcttttgaagaatcaaaagttggtgtaagaggtcttgtggagagtggggtaacaaagatcccacgcat |
26395923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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