View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5422-Insertion-10 (Length: 422)
Name: NF5422-Insertion-10
Description: NF5422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5422-Insertion-10 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 422
Target Start/End: Complemental strand, 8299458 - 8299050
Alignment:
| Q |
8 |
aaatttttctgtggaatcaatggatagtctcagaggctttaagtcacaccattt-ggtgttgaagatatttttcattatatagaataccacactgatttc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8299458 |
aaatttttctgtggaatcaatggatagtctcag--gctttaagtcacaccattttggtgttgaagatatttttcattatatagaataccacactgatttc |
8299361 |
T |
|
| Q |
107 |
tttctcaaatttcgatgagtatacaaactgtaatacttgattctactctatttcgttcttcaactacaaaaccatgtcagca---------------att |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
8299360 |
tttctcaaatttcgatgagtatacaaactgtaatacttgattctactctatttcgttcttcaactacaaaaccatttcagcaaaaggaatattgcttatt |
8299261 |
T |
|
| Q |
192 |
acatcaatgatgcaaattaatcaaaaaatttcaaattcttgattgcgtgaatattttatcttgatgtgtttacatctgcctcaattttttctgtgaagtc |
291 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8299260 |
acatcaatgatgcaaattaatcacaaattttcaaattcttgattgcgtgaatattttatcttcatgtgtttacatctgcctcaatt-------------- |
8299175 |
T |
|
| Q |
292 |
aatggatttaaaagactgtaaggcacgccatttggtgattgaagttgtttttcagttgacaggcaaacatgatgaagacattgaagaatatagtaatcca |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8299174 |
----gatttaaaagactgtaaggcacgccatttggtgattgaagttgtttttcagttgacaggc--acatgatgaagacattgaagaatatagtaatcca |
8299081 |
T |
|
| Q |
392 |
ttcttagttacactatcatataattcacctc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8299080 |
ctcttagttacactatcatataattcacctc |
8299050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 322
Target Start/End: Original strand, 18281905 - 18281951
Alignment:
| Q |
276 |
ttttttctgtgaagtcaatggatttaaaagactgtaaggcacgccat |
322 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
18281905 |
ttttttgtgtgaagtcaatggatttaaaagacttcaaggcacaccat |
18281951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 8312393 - 8312332
Alignment:
| Q |
20 |
ggaatcaatggatagtctcagaggctttaagtcacaccatttggtgttgaagatatttttca |
81 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||| || |||||| ||||||||||| ||||||| |
|
|
| T |
8312393 |
ggaatcaatggacagtctaagaggttttaaggcaaaccattcagtgttgaagatgtttttca |
8312332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 30255578 - 30255521
Alignment:
| Q |
364 |
tgaagacattgaagaatata---gtaatccattcttagttacactatcatataattca |
418 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||||||| |||||||||||||| |
|
|
| T |
30255578 |
tgaagacattggagaatatactagtaatctattcttagttacaatatcatataattca |
30255521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University