View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5422-Insertion-2 (Length: 1030)
Name: NF5422-Insertion-2
Description: NF5422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5422-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 334
Target Start/End: Complemental strand, 687852 - 687528
Alignment:
| Q |
7 |
atgattgtcattttggttataactcgaactcatattcttaaaagcagcaaatcagaactagttgatgaaagggacgacaacaactcctgctgaccccgca |
106 |
Q |
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| T |
687852 |
atgattgtcgttttggttataactcgaactcatattcttaaaagca---aatgagaactagttgatgaaagggatgacaacaactcctgctgaccccgca |
687756 |
T |
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| Q |
107 |
gaaaccaggatcaccataaatt-----cacattataaatatttttattttgataacgtaccgtctttatcaaaatatatcttctgatatttaagctgaaa |
201 |
Q |
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| T |
687755 |
gaaaccaggatcaccataaattgaattcacattataaatatttttatttttataacgtaccgtctttatcaaaatatatcttctgatatttaagctgaaa |
687656 |
T |
|
| Q |
202 |
tatcaatcataatataatagtcgtggccccatggggccttgttgatcattgttctatataatgtagaagagaagagaccatgacatgaggtagcaaccgg |
301 |
Q |
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| T |
687655 |
tatcaatcataatataatagtcgtggccccatggggccttgttgatcattgttctatataatgtagaagagaagagacc-----atgaggtagcaaccgg |
687561 |
T |
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| Q |
302 |
tgtacaagggtacagtggacagcgggtatagtt |
334 |
Q |
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| T |
687560 |
tgtacaagggtacagtggacagcgggtatagtt |
687528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 647 - 1030
Target Start/End: Complemental strand, 686363 - 685971
Alignment:
| Q |
647 |
gtcaacggcagtcaaatgccgttgcaaatttttgttttgacttcctgacgacatttaagtgtcgttggaaaattaaacaaaaatttgcaatgacagttaa |
746 |
Q |
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| T |
686363 |
gtcaacggtaatcaaatgttgttgcaaatttttgttt-gacttcctgacgacatttaactgtcgttggaaaattaaacaaaaatttgcaatgacagttaa |
686265 |
T |
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| Q |
747 |
ctaacattggtaagcgaattccctnnnnnnn-cattggtaagcgaatgacaattatcaaaggagtgtaagagtgtgttgaagcaaagnnnnnnn--gtta |
843 |
Q |
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| T |
686264 |
ctaacattggtaagcgaattccctaaaaaaaacattggtaagcgaatgacaattatcaaaggagtgtaagagtctgtcgaagcaaagaaaaaaaaagtta |
686165 |
T |
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| Q |
844 |
attttagaacacttgtttaacacgtgtctgacactgaaacacgtctaatgtcaaagtgtatgtgccttgtagcat-wtggacattgggcttgct-agaat |
941 |
Q |
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| T |
686164 |
attttaaaacatttgtttaacacgtgtctgacactgaaacacgtctaatgtcaaagtgtatgtgcctcgtagcatattggacattgggcttgctaagaat |
686065 |
T |
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| Q |
942 |
ttatggattttgtctgtgtaggg-ccaacc-tttcattgagtttgacttatcataccc-atttctag-aagcaatttgac-attgcttttctca |
1030 |
Q |
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| T |
686064 |
ttatggactttgtctgtgtagggcccaaccatttcattgagttcgacatatcatacccaatttctagaaaacaatttgacaattgcttttctca |
685971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 410 - 474
Target Start/End: Complemental strand, 687508 - 687444
Alignment:
| Q |
410 |
atagaaagtgtaccgttttcatagaatccatatccttttataagatagttgagaaggaatgctag |
474 |
Q |
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| T |
687508 |
atagaaagtgtaccgttttcatagaatccatatccttttataagatagttgagaaggaatgctag |
687444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 513 - 564
Target Start/End: Complemental strand, 686416 - 686365
Alignment:
| Q |
513 |
atttgagcatgagcccaatccggatgaagttagttcatttcaaacttctcac |
564 |
Q |
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| T |
686416 |
atttgagcatgagcccaatccggatgaagttagttcatttcaaacttctcac |
686365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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