View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5422-Insertion-3 (Length: 990)
Name: NF5422-Insertion-3
Description: NF5422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5422-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 825; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 825; E-Value: 0
Query Start/End: Original strand, 7 - 990
Target Start/End: Complemental strand, 39396504 - 39395520
Alignment:
| Q |
7 |
aaatacggcactcgcagcatccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcattgttgtgtaa |
106 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39396504 |
aaatacggcacttgcaacatccaagtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcatttttgtgtaa |
39396405 |
T |
|
| Q |
107 |
gaaactctcaaagaagattgataagtactccatgcccttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccaaatatgaat |
206 |
Q |
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| T |
39396404 |
gaaactctcaaagaagattgataagtactccatgcc-ttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccagatatgaat |
39396306 |
T |
|
| Q |
207 |
ctcattgttgtgtggtactttttcgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagagtattttctaattcgtc |
306 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39396305 |
ctcattgtcatgtggtactttttcgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagggtattttctaattcgtc |
39396206 |
T |
|
| Q |
307 |
ttaggtggtctaaatgattgttttagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaacaaacagac |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39396205 |
ttaggtggtctaaatgattgttttagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaaccaacagac |
39396106 |
T |
|
| Q |
407 |
acgaaatagggtctcaaaataggtgtacgtataatctgtgaaactatgtacacannnnnnnnnaaacaaaaattatgtacacattaaacaaatgcacaaa |
506 |
Q |
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| T |
39396105 |
acgaaatagggtctcaaaataggtgtacgtataatctgtgaaattatgtacaca-ttttttttaaacaaaaattatgtacacattaaacaaatgcacaaa |
39396007 |
T |
|
| Q |
507 |
gtaaaacaatatgaacaatattacagtctaattgtatttagtcactgtgtaatttgcattacgtttgtagatgttcttcattgggaagttcttttcgggt |
606 |
Q |
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| T |
39396006 |
gtaaaacaatatgaacagtattacagtctaattgtatttagtcactgtgtaatttgcattacgtttgtagatgttcttcattgggaagttcttttcgggt |
39395907 |
T |
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| Q |
607 |
attattatnnnnnnnnnnnnnnnnnctttttctccttataagatcaccaaatcttctcagcaatgctttactttttctgttgtttctatcagcctcagaa |
706 |
Q |
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| T |
39395906 |
attattattagtagcagtagtagtactttttctccttataagatcaccaaatcttctcagcaatgctttactttttctgttgtttctatcagcctcagaa |
39395807 |
T |
|
| Q |
707 |
tcatcaaaatgtgattcatctaaatgatcaaagtcatcatgaattcccatttcaacatgtgtttctgaatcaggtgaatcgtcctccacttcatcaaata |
806 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395806 |
tcatcaaaatgtgattcatctaaatgatcaaaatcttcatgaattcccatttcaacatgtgtttctgaatcaggtgaatcgtcctccacttcatcaaata |
39395707 |
T |
|
| Q |
807 |
ttgaaccctttagtgtatcatcttctacaataatttctttattaacaacctcttcattattcccccctttgtgttgctgcttatgtggtgttatcatgtc |
906 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395706 |
ttgaaccctttagtgtatcatcttctacaataatttctttattaacaacctcttcattattcccccctttgtgttgctgcttatgtggtgttatcatgtc |
39395607 |
T |
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| Q |
907 |
ttttatattaagactaaa--gtttgcttaaactttttgattctttaggctccttatgatgttgttct-ctgagtgatgatgatgccc |
990 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39395606 |
ttttatattaagactaaaagttttgcttaaactttttgattctttaggctccttatgatgttgttctcctgagtgatgatgatgccc |
39395520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 43597970 - 43597914
Alignment:
| Q |
71 |
tctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataa |
130 |
Q |
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||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||| |
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| T |
43597970 |
tctattaagttcaatagctgc---atttttgtgtaagaacctctcaaagaagatcgataa |
43597914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 37104294 - 37104369
Alignment:
| Q |
116 |
aaagaagattgataagtactccatgccct-tatatttgggtagtacacgtgagattatctttgttcaatctttcaa |
190 |
Q |
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||||| |||||||||||||| |||||||| || || ||||| ||||| | ||||||||||||||| ||||||||| |
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| T |
37104294 |
aaagatgattgataagtacttcatgccctataaatatgggtggtacatgcaagattatctttgttcgatctttcaa |
37104369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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