View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5422-Insertion-4 (Length: 673)

Name: NF5422-Insertion-4
Description: NF5422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5422-Insertion-4
NF5422-Insertion-4
[»] chr4 (4 HSPs)
chr4 (27-673)||(55244577-55245223)
chr4 (101-166)||(22683923-22683988)
chr4 (97-166)||(36639850-36639919)
chr4 (97-166)||(41751233-41751302)
[»] chr6 (5 HSPs)
chr6 (99-168)||(32888916-32888985)
chr6 (101-168)||(34620945-34621012)
chr6 (101-168)||(34748382-34748449)
chr6 (101-168)||(882745-882812)
chr6 (114-159)||(957591-957636)
[»] chr3 (2 HSPs)
chr3 (97-199)||(37334962-37335064)
chr3 (97-185)||(36302238-36302328)
[»] chr1 (3 HSPs)
chr1 (103-168)||(48548973-48549038)
chr1 (101-143)||(1514402-1514444)
chr1 (99-144)||(37733617-37733662)
[»] chr8 (4 HSPs)
chr8 (101-185)||(36447690-36447774)
chr8 (97-168)||(4950538-4950609)
chr8 (101-199)||(32927951-32928049)
chr8 (111-155)||(43492209-43492253)
[»] chr5 (3 HSPs)
chr5 (97-168)||(4306567-4306638)
chr5 (96-225)||(117399-117527)
chr5 (101-209)||(35138941-35139049)
[»] scaffold0361 (1 HSPs)
scaffold0361 (101-168)||(14073-14140)
[»] chr7 (1 HSPs)
chr7 (97-168)||(22310418-22310489)
[»] chr2 (2 HSPs)
chr2 (77-142)||(10644638-10644703)
chr2 (104-185)||(40401585-40401666)


Alignment Details
Target: chr4 (Bit Score: 607; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 27 - 673
Target Start/End: Original strand, 55244577 - 55245223
Alignment:
Q  27 gacatgttctattgtcgattttgcctttaggaatatatttgatggtatttattatacaattaacttgaatacttaaatttattcttcaacttatttttac 126  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55244577 gacatgttgtattgtcgattttgcctttaggaatatatttgatggtatttattatacaattaacttgaatacttaaatttattcttcaacttatttttac 55244676  T
Q  127 ataaatgtatccaaacattaaccattttatcttcaactcaatgttagtcggaaccaattttagatgatcaatttacacaaattaatttttgccaacacaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55244677 ataaatgtatccaaacattaaccattttatcttcaactcaatgttagtcggaaccaattttagatgatcaatttacacaaattaatttttgccaacacaa 55244776  T
Q  227 agcaaacaaacatataatctacttggtgaaaagacccgaattattttatattttaataacatacacatgatatacaaacaagctagctagttagctagtt 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55244777 agcaaacaaacatataatctacttggtgaaaagacccgaattattttatattttaataacatacacatgatatacaaacaagctagctagttagctagtt 55244876  T
Q  327 agtttgtacttgtacttggccaccataataaatagtacaacaaacattgcctgcaactgagaaattaaacataaaattggagtcgaaaagccaaagcaca 426  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55244877 agtttgtacttgtacttggccaacataataaatagtacaacaaacattgcctgcaactgagaaattaaacataaaattggagtcgaaaagccaaagcaca 55244976  T
Q  427 agatgattgatgtgatatatagctgaaggtgatgtaaacaaagtaagagaaaaaggtgaaggttgagatcagatgaatttatgaatataatgaaatagtc 526  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||    |||||    
T  55244977 agatgattgatgtcatatatagctgaaggtgatgtaaacaaagtaagagaaaaaggtgaaggttgagatgagatgaatttatgaatgaaatatggtagtc 55245076  T
Q  527 ccaagcagaaaaagtaatgaaaccctcgtttcgtttcacttgaccaaaagaaaggaccagtacttggtagccacgatgtgtccctatcttcatgtgaaac 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55245077 ccaagcagaaaaagtaatgaaaccctcgtttcgtttcacttgaccaaaagaaaggaccagtacttggtagccacgatgtgtccctatcttcatgtgaaac 55245176  T
Q  627 agtgtctttttccttaccttcttttacactagaaaacaatcttaatt 673  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  55245177 agtgtctttttccttaccttcttttacactagaaaacaatcttaatt 55245223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 22683923 - 22683988
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactca 166  Q
    ||||||||| |||||||   |||||||||||||| ||||||||| ||||||||||  |||||||||    
T  22683923 aaatttattgttcaactcgcttttacataaatgtgtccaaacataaaccattttactttcaactca 22683988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 36639850 - 36639919
Alignment:
Q  97 acttaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactca 166  Q
    ||||||||||||| |||||| ||  | ||||| ||||||||||||||| || || |||||||||||||||    
T  36639850 acttaaatttattgttcaacatacctgtacatgaatgtatccaaacataaatcactttatcttcaactca 36639919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 41751302 - 41751233
Alignment:
Q  97 acttaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactca 166  Q
    ||||||||||||| || || | | |||||||| ||||||| |||||||||| || |||||||| ||||||    
T  41751302 acttaaatttattgtttaattcagttttacatgaatgtattcaaacattaatcactttatcttgaactca 41751233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 32888985 - 32888916
Alignment:
Q  99 ttaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaat 168  Q
    ||||||||||| ||||||| | |||||||||||| ||| ||||||| || ||||||||||||||||||||    
T  32888985 ttaaatttattgttcaactcacttttacataaatatattcaaacataaatcattttatcttcaactcaat 32888916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 34620945 - 34621012
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaat 168  Q
    ||||||||| ||||||| | |||||||||||||||||||||||| || || |||| ||||||||||||    
T  34620945 aaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaat 34621012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 34748382 - 34748449
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaat 168  Q
    ||||||||| ||||||| | |||||||||||||||||||||||| || || |||| ||||||||||||    
T  34748382 aaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaat 34748449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 882745 - 882812
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaat 168  Q
    ||||||||| || |||| | |||| ||| ||||||||||||||| || ||||||| ||||||||||||    
T  882745 aaatttattgtttaactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaat 882812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 957636 - 957591
Alignment:
Q  114 aacttatttttacataaatgtatccaaacattaaccattttatctt 159  Q
    |||| |||||||||| ||||||||||||||| || |||||||||||    
T  957636 aactcatttttacatgaatgtatccaaacataaatcattttatctt 957591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 37335064 - 37334962
Alignment:
Q  97 acttaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaatgttagtcggaaccaattttagatgatca 196  Q
    |||| |||| ||| ||||||| ||||||| || ||||||| || |||| || || |||| |||||||||||| |||||||||| |||||||| || ||||    
T  37335064 acttgaattcattgttcaactcatttttatatgaatgtattcagacataaatcactttaccttcaactcaattttagtcggaatcaattttatataatca 37334965  T
Q  197 att 199  Q
    |||    
T  37334964 att 37334962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 36302238 - 36302328
Alignment:
Q  97 acttaaatttattcttcaacttatttttacataaatgtatccaaacattaacca--ttttatcttcaactcaatgttagtcggaaccaatt 185  Q
    ||||||||||||| ||||||| | |||||||| |||| ||||| ||||||| ||  |||||||||||||||||| |||  ||||| |||||    
T  36302238 acttaaatttattgttcaactcacttttacatgaatgaatccacacattaatcattttttatcttcaactcaattttaaccggaatcaatt 36302328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 48549038 - 48548973
Alignment:
Q  103 atttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaat 168  Q
    ||||||| ||||||| | ||||||||||||||||| |||||| || ||||||| ||||||||||||    
T  48549038 atttattgttcaactcacttttacataaatgtatcaaaacataaatcattttaccttcaactcaat 48548973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 1514402 - 1514444
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaaca 143  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||    
T  1514402 aaatttattgttcaactcatttttacatgaatgtatccaaaca 1514444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 37733662 - 37733617
Alignment:
Q  99 ttaaatttattcttcaacttatttttacataaatgtatccaaacat 144  Q
    ||||||||||| ||||||| |||| ||||||||||||| |||||||    
T  37733662 ttaaatttattattcaactcatttatacataaatgtattcaaacat 37733617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 36447774 - 36447690
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaatgttagtcggaaccaatt 185  Q
    ||||||||| ||||||| | || |||||||||||||| |||||  || |||||||| ||||||||| | |||||||||| |||||    
T  36447774 aaatttattattcaactcagttatacataaatgtatctaaacacaaatcattttatattcaactcacttttagtcggaatcaatt 36447690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 4950538 - 4950609
Alignment:
Q  97 acttaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaat 168  Q
    ||||||||||||| ||||||| | |||  ||||||| ||||||||||| || || |||| ||||||||||||    
T  4950538 acttaaatttatttttcaactcactttctcataaatatatccaaacataaatcactttaccttcaactcaat 4950609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 32927951 - 32928049
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaatgttagtcggaaccaattttagatgatcaatt 199  Q
    ||||||||  ||||||| | |||||||| ||||||||||||||  || || |||  |||||||||||| |||||  ||| |||||||| || |||||||    
T  32927951 aaatttatagttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagtaagaatcaattttacataatcaatt 32928049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 43492253 - 43492209
Alignment:
Q  111 ttcaacttatttttacataaatgtatccaaacattaaccatttta 155  Q
    ||||||||| |||||||| ||||||||||||||| || |||||||    
T  43492253 ttcaacttacttttacatgaatgtatccaaacataaatcatttta 43492209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 4306567 - 4306638
Alignment:
Q  97 acttaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaat 168  Q
    ||||||||||||| ||||| |  ||||||||| ||||||||||||||| || |||||||  |||||||||||    
T  4306567 acttaaatttattgttcaattcttttttacatgaatgtatccaaacataaatcattttacattcaactcaat 4306638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 117527 - 117399
Alignment:
Q  96 tacttaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaatgttagtcggaaccaattttagatgatc 195  Q
    |||| |||| |||| || |||| | ||||||||| |||||||||||||| || ||||||| |||||||||| |  ||||| ||| |||| ||| || |||    
T  117527 tactcaaatgtattgtttaactcacttttacatagatgtatccaaacatgaatcattttaccttcaactcacttctagtcagaatcaatattacataatc 117428  T
Q  196 aatttacacaaattaatttttgccaacaca 225  Q
    |||| || | ||| |||||||| |||||||    
T  117427 aattcactc-aatcaatttttgtcaacaca 117399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 35139049 - 35138941
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaatgttagtcggaaccaattttagatgatcaattt 200  Q
    ||||||||| ||||||| | ||| | || ||||||||  ||||| || ||||||| |||||||||||| |||| | ||| ||| |||| || |||||||     
T  35139049 aaatttattgttcaactcactttcatatgaatgtatctgaacataaatcattttaccttcaactcaattttagacagaatcaagtttacataatcaattc 35138950  T
Q  201 acacaaatt 209  Q
    || ||||||    
T  35138949 actcaaatt 35138941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 14140 - 14073
Alignment:
Q  101 aaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaat 168  Q
    ||||||||| ||||||| | ||| |||| ||||||||||||||| || || |||| ||||||||||||    
T  14140 aaatttatttttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactcaat 14073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 22310489 - 22310418
Alignment:
Q  97 acttaaatttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaat 168  Q
    ||||||||||||| ||||| | | ||||||   ||||||||||||||| || | ||||||||||||||||||    
T  22310489 acttaaatttatttttcaattcacttttacgagaatgtatccaaacataaatctttttatcttcaactcaat 22310418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 10644638 - 10644703
Alignment:
Q  77 attatacaattaacttgaatacttaaatttattcttcaacttatttttacataaatgtatccaaac 142  Q
    |||||| |||||||||  |||| |||||||||  ||||||| | ||||| ||||||||||||||||    
T  10644638 attatagaattaactttcatacataaatttatagttcaactcacttttatataaatgtatccaaac 10644703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 40401666 - 40401585
Alignment:
Q  104 tttattcttcaacttatttttacataaatgtatccaaacattaaccattttatcttcaactcaatgttagtcggaaccaatt 185  Q
    |||||| ||||||| | |||||||| ||||||||||||||| ||  | | || |||||||||| | ||||| ||||||||||    
T  40401666 tttattgttcaactgacttttacatgaatgtatccaaacataaattagtctaccttcaactcatttttagtaggaaccaatt 40401585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University