View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5422-Insertion-5 (Length: 664)

Name: NF5422-Insertion-5
Description: NF5422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5422-Insertion-5
NF5422-Insertion-5
[»] chr6 (10 HSPs)
chr6 (87-642)||(16863450-16864004)
chr6 (8-183)||(6977868-6978053)
chr6 (87-177)||(6977259-6977349)
chr6 (8-76)||(16864341-16864409)
chr6 (8-74)||(20409208-20409274)
chr6 (8-66)||(16859477-16859535)
chr6 (8-76)||(6977168-6977236)
chr6 (98-172)||(12182525-12182598)
chr6 (530-570)||(6977867-6977907)
chr6 (530-563)||(6977316-6977349)
[»] chr7 (2 HSPs)
chr7 (197-528)||(40471265-40471612)
chr7 (8-74)||(12962125-12962191)
[»] chr4 (12 HSPs)
chr4 (87-200)||(55984999-55985112)
chr4 (87-200)||(55985990-55986103)
chr4 (14-76)||(55986158-55986220)
chr4 (8-76)||(55984907-55984975)
chr4 (9-74)||(9178776-9178841)
chr4 (9-74)||(9180521-9180586)
chr4 (9-74)||(48157530-48157595)
chr4 (8-59)||(40169645-40169696)
chr4 (16-74)||(48157269-48157327)
chr4 (567-642)||(9180080-9180152)
chr4 (530-569)||(55986007-55986046)
chr4 (530-569)||(55985056-55985095)
[»] chr8 (6 HSPs)
chr8 (8-74)||(23039378-23039444)
chr8 (8-76)||(23039265-23039333)
chr8 (98-183)||(38613154-38613239)
chr8 (15-74)||(38612367-38612426)
chr8 (15-74)||(38613268-38613327)
chr8 (530-569)||(38613154-38613193)
[»] chr3 (8 HSPs)
chr3 (8-74)||(54539349-54539415)
chr3 (101-200)||(48053396-48053496)
chr3 (8-74)||(48059020-48059086)
chr3 (9-74)||(48053267-48053332)
chr3 (8-76)||(54539237-54539304)
chr3 (530-569)||(48053440-48053479)
chr3 (567-652)||(48057828-48057909)
chr3 (326-387)||(2056345-2056406)
[»] chr5 (10 HSPs)
chr5 (8-74)||(17415541-17415607)
chr5 (14-74)||(14189811-14189871)
chr5 (14-74)||(14190339-14190399)
chr5 (14-69)||(8062003-8062058)
chr5 (14-69)||(8067306-8067361)
chr5 (130-200)||(8062108-8062178)
chr5 (8-74)||(24242159-24242226)
chr5 (567-615)||(8066913-8066960)
chr5 (326-372)||(18876301-18876347)
chr5 (533-569)||(8062125-8062161)
[»] chr2 (10 HSPs)
chr2 (98-183)||(28847561-28847647)
chr2 (14-69)||(1389379-1389434)
chr2 (14-69)||(1394710-1394765)
chr2 (130-200)||(1394590-1394660)
chr2 (8-74)||(45413328-45413393)
chr2 (567-652)||(28851104-28851185)
chr2 (567-615)||(1389813-1389860)
chr2 (530-569)||(28847608-28847647)
chr2 (8-74)||(45412476-45412543)
chr2 (533-569)||(1394607-1394643)
[»] chr1 (2 HSPs)
chr1 (8-74)||(46313125-46313191)
chr1 (14-74)||(50379823-50379883)


Alignment Details
Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 87 - 642
Target Start/End: Original strand, 16863450 - 16864004
Alignment:
Q  87 tatagaaggtgttggcacgtgagagcttctaacggccaaaaactccaaccttaaaaaccctcaattcttcaacccttcttcttcatctgttcttcttgat 186  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16863450 tatagaaggtgttggcacgtgagagcttctaacggctaaaaactccaaccttaaaaaccctcaattcttcaacccttcttcttcatctgttcttcttgat 16863549  T
Q  187 tttattccaccatatcaggccacagaatcttgtatgatggcaccacagaacattgaggaggactaaaaagcattaccatccacaaataatgctgatagac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  16863550 tttattccaccatatcaggccacagaatcttgtatgatggcaccacagagcattgaggaggaccaaaaagcattaccatccacaaataatgttgatagac 16863649  T
Q  287 cttcgtctgatggatataactagagaaaatatggacagaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaag 386  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16863650 cttcgtatgatggatataactagagaaaatatggaaagaagcgagtatcttcgaagttattacaagtgcacatatcctaattatccagttaaaaagaaag 16863749  T
Q  387 ttgaaagatcattagatggtgagattgcagaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatc 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16863750 ttgaaagatcattagatggtgagattgcagaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatc 16863849  T
Q  487 aggaacgatttctgat-gaatgg-tcaagataaagtatggagtatcccccaattcttcaacccttcttcttcatctgttcttcttactttgaagcatccc 584  Q
    ||||| || ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16863850 aggaatgacttctgatggaatggttcaagataaagtatggagtatcccccaattcttcaacccttcttcttcatctgttcttcttactttgaagcat-cc 16863948  T
Q  585 atgtcggaaatctgtccagagaacacgtttcgcttgaggttgatgtaacttccatatt 642  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  16863949 atgtcgggaatctgtccagagaacacgtttc-cttga-gttgatgtaacttccatatt 16864004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 6978053 - 6977868
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttggagnnnnnnnnntataga----------aggtg 97  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||          |||| |          |||||    
T  6978053 gaggtgtcatgccgcatgtgtatttttccatttatttttattcaaaaagccaattgtgtaatgcttggaaaaaaaaaaatatacatatatatataaggtg 6977954  T
Q  98 ttggcacgtgagagcttctaacggccaaaaactccaaccttaaaaaccctcaattcttcaacccttcttcttcatctgttcttctt 183  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  6977953 ttggcacgtgagagcttccaacggctaaaaactccaaccttaaaaaccccaaattcttcaacccttcttcttcatctgttcttctt 6977868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 6977259 - 6977349
Alignment:
Q  87 tatagaaggtgttggcacgtgagagcttctaacggccaaaaactccaaccttaaaaaccctcaattcttcaacccttcttcttcatctgtt 177  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  6977259 tatagaaggtgttggcacgtgagagcttccaacggctaaaaactccaaccttaaaaaccccaaattcttcaacccttcttcttcatctgtt 6977349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 16864409 - 16864341
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttgga 76  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16864409 gaggtgtcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatggttgga 16864341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 20409208 - 20409274
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  20409208 gaggtgtcatgccacatgtgtattttcccatttatttttattcaaaaagccacttgtgtaatacttg 20409274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 16859477 - 16859535
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgt 66  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16859477 gaggtgtcataccacatgtgtattttcccatttatttttattcaaaaagccaattgtgt 16859535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 6977168 - 6977236
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttgga 76  Q
    ||||| |||| |||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  6977168 gaggtgtcataccacatatgtattttttcatttatttttattcaaaaagccaattgtgtaatgcttgga 6977236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 12182598 - 12182525
Alignment:
Q  98 ttggcacgtgagagcttctaacggccaaaaactccaaccttaaaaaccctcaattcttcaacccttcttcttcat 172  Q
    |||||||||||||| ||| |||||  |||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  12182598 ttggcacgtgagag-ttccaacggtaaaaatctccaaccttaaaaacccccaattcttcaacctttcttcttcat 12182525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 570
Target Start/End: Complemental strand, 6977907 - 6977867
Alignment:
Q  530 cccccaattcttcaacccttcttcttcatctgttcttctta 570  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  6977907 ccccaaattcttcaacccttcttcttcatctgttcttctta 6977867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 563
Target Start/End: Original strand, 6977316 - 6977349
Alignment:
Q  530 cccccaattcttcaacccttcttcttcatctgtt 563  Q
    |||| |||||||||||||||||||||||||||||    
T  6977316 ccccaaattcttcaacccttcttcttcatctgtt 6977349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 197 - 528
Target Start/End: Complemental strand, 40471612 - 40471265
Alignment:
Q  197 catatcaggccacagaatcttgtatgatggcaccacagaacattgaggaggactaaaaagcattaccatccacaaataatgctgatagaccttcgtctga 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  40471612 catatcaggccacagaatcttgtatgatggcaccacagaacattgaggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatga 40471513  T
Q  297 tggatataactagagaaaatatggacagaagc--------------gagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaag 382  Q
    ||||||||||| ||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40471512 tggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaag 40471413  T
Q  383 aaagttgaaagatcattagatggtgagattgcagaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaa 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40471412 aaagttgaaagatcattagatggtgagattgcagaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaa 40471313  T
Q  483 catcaggaacgatttctgat-gaatgg-tcaagataaagtatggagta 528  Q
    ||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  40471312 catcaggaatgatttctgatggaatggttcaagataaagtatggagta 40471265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 12962125 - 12962191
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12962125 gaggtgtcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 12962191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 6e-48; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 87 - 200
Target Start/End: Original strand, 55984999 - 55985112
Alignment:
Q  87 tatagaaggtgttggcacgtgagagcttctaacggccaaaaactccaaccttaaaaaccctcaattcttcaacccttcttcttcatctgttcttcttgat 186  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  55984999 tatagaaggtgttggcacgtgagagcttccaacggctaaaaactccaaccttaaaaacccccaattcttcaacccttcttcttcatatgttcttcttgat 55985098  T
Q  187 tttattccaccata 200  Q
    ||||||||||||||    
T  55985099 tttattccaccata 55985112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 55986103 - 55985990
Alignment:
Q  87 tatagaaggtgttggcacgtgagagcttctaacggccaaaaactccaaccttaaaaaccctcaattcttcaacccttcttcttcatctgttcttcttgat 186  Q
    |||| |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  55986103 tatataaggtgttagcacgtgagagcttccaacggctaaaaactccaaccttaaaaacccccaattcttcaacccttcttcttcatctgttcttcttgat 55986004  T
Q  187 tttattccaccata 200  Q
    ||||||||||||||    
T  55986003 tttattccaccata 55985990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 55986220 - 55986158
Alignment:
Q  14 tcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttgga 76  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  55986220 tcatgccacatgtgtattttcccatttatttttattcaaaaaaccaattgtgtaatgcttgga 55986158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 55984907 - 55984975
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttgga 76  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  55984907 gaggtgtcatgccacatgtgtatttttccatttatttttattcaaaaagtcaattgtgtaatgcttgga 55984975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 9178776 - 9178841
Alignment:
Q  9 aggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  9178776 aggtgtcatgccacatgtgtattttcccatttatttttattgaaaaagccaattgtgtaatacttg 9178841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 9180586 - 9180521
Alignment:
Q  9 aggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  9180586 aggtgtcatgccacatgtgtattttcccatttatttttattgaaaaagccaattgtgtaatacttg 9180521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 48157595 - 48157530
Alignment:
Q  9 aggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  48157595 aggtgtcatgccacatgtgtattttcccatttatttttattgaaaaagccaattgtgtaatacttg 48157530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 40169696 - 40169645
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagcca 59  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40169696 gaggtgtcatgccacatgtgtattttcccatttatttttattcaaaaagcca 40169645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 48157269 - 48157327
Alignment:
Q  16 atgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  48157269 atgccacatgtgtattatcccatttatttttattgaaaaagccaattgtgtaatacttg 48157327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 642
Target Start/End: Original strand, 9180080 - 9180152
Alignment:
Q  567 cttactttgaagcatcccatgtcggaaatctgtccagagaacacgtttcgcttgaggttgatgtaacttccatatt 642  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  9180080 cttactttgaagcatcc-atgtcgggaatctgtccagagaacacgtttc-cttga-gttgatggaacttccatatt 9180152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 530 - 569
Target Start/End: Complemental strand, 55986046 - 55986007
Alignment:
Q  530 cccccaattcttcaacccttcttcttcatctgttcttctt 569  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  55986046 cccccaattcttcaacccttcttcttcatctgttcttctt 55986007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 569
Target Start/End: Original strand, 55985056 - 55985095
Alignment:
Q  530 cccccaattcttcaacccttcttcttcatctgttcttctt 569  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  55985056 cccccaattcttcaacccttcttcttcatatgttcttctt 55985095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 23039444 - 23039378
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23039444 gaggtgtcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 23039378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 23039265 - 23039333
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttgga 76  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||    
T  23039265 gaggtgtcatgccacatgtgtattttctcatttttttttattcaaaaagccaactgtgtaatgcttgga 23039333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 38613239 - 38613154
Alignment:
Q  98 ttggcacgtgagagcttctaacggccaaaaactccaaccttaaaaaccctcaattcttcaacccttcttcttcatctgttcttctt 183  Q
    ||||||| |||||| | | |||||  ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  38613239 ttggcacatgagagttccaaacggtaaaaaactacaaccttaaaaacccccaattcttcaatccttcttcttcatctgttcttctt 38613154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 38612367 - 38612426
Alignment:
Q  15 catgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||    
T  38612367 catgccacatgtgtattttcccatttatttttattcaaaaagccacctgtgtaatacttg 38612426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 38613327 - 38613268
Alignment:
Q  15 catgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |||||||| ||||    
T  38613327 catgccacatgtgtattttcccatttatttttgttcaaaaagccacctgtgtaatacttg 38613268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 569
Target Start/End: Complemental strand, 38613193 - 38613154
Alignment:
Q  530 cccccaattcttcaacccttcttcttcatctgttcttctt 569  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  38613193 cccccaattcttcaatccttcttcttcatctgttcttctt 38613154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 54539415 - 54539349
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54539415 gaggtgtcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 54539349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 48053396 - 48053496
Alignment:
Q  101 gcacgtgagagcttctaacggccaaaaactccaaccttaaaaaccctc-aattcttcaacccttcttcttcatctgttcttcttgattttattccaccat 199  Q
    ||||||||||| | |  ||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  48053396 gcacgtgagagttcccgacggcaaaaaactccaaccttaaaaaccccccaattcttcaacccttcttcttcatctgttcttcttgatcttattcgaccat 48053495  T
Q  200 a 200  Q
    |    
T  48053496 a 48053496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 48059086 - 48059020
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  48059086 gaggtgtcatgccacatgtgtattttcccatttatttttattcaaaaagccacttgtgtaatacttg 48059020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 48053267 - 48053332
Alignment:
Q  9 aggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  48053267 aggtgtcatgccacatgtgtattttcccatttatttttattcaaaaggccacttgtgtaatacttg 48053332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 54539237 - 54539304
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttgga 76  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||    
T  54539237 gaggtgtcatgccacatgtgtattttctcattt-tttttattcaaaaagccaactgtgtaatgcttgga 54539304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 530 - 569
Target Start/End: Original strand, 48053440 - 48053479
Alignment:
Q  530 cccccaattcttcaacccttcttcttcatctgttcttctt 569  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48053440 cccccaattcttcaacccttcttcttcatctgttcttctt 48053479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 652
Target Start/End: Original strand, 48057828 - 48057909
Alignment:
Q  567 cttactttgaagcatcccatgtcggaaatctgtccagagaacacgtttcgcttgaggttgatgtaacttccatatttcgaatcttt 652  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||  ||||| ||||||  |||||||||| |||||||||||    
T  48057828 cttactttgaagcatcc-atgtcgggaatctgtccagagaacacgttt-tcttga-gttgatagaacttccata-ttcgaatcttt 48057909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 326 - 387
Target Start/End: Original strand, 2056345 - 2056406
Alignment:
Q  326 agcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagt 387  Q
    |||||||| ||||||||||| |||||||| ||  || | |||||||||||||||||||||||    
T  2056345 agcgagtaccctcgaagttactacaagtgtactcattcaaattgtccagttaaaaagaaagt 2056406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 17415607 - 17415541
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  17415607 gaggtatcatgccacatgtgtattttcccatttatttttattcaaaaagccacttgtgtaatacttg 17415541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 14189811 - 14189871
Alignment:
Q  14 tcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  14189811 tcatgccacatgtgtattttcccatttatttttattgaaaaagccaattgtgtaatacttg 14189871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 14190399 - 14190339
Alignment:
Q  14 tcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  14190399 tcatgccacatgtgtattttcccatttatttttattgaaaaagccaattgtgtaatacttg 14190339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 8062003 - 8062058
Alignment:
Q  14 tcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaat 69  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||    
T  8062003 tcatgccacatgtgtatttccccatttattttaaatcaaaaagccaattgtgtaat 8062058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 8067361 - 8067306
Alignment:
Q  14 tcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaat 69  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||    
T  8067361 tcatgccacatgtgtatttccccatttattttaaatcaaaaagccaattgtgtaat 8067306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 8062108 - 8062178
Alignment:
Q  130 tccaaccttaaaaaccctcaattcttcaacccttcttcttcatctgttcttcttgattttattccaccata 200  Q
    |||||| ||||||| |  ||| ||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  8062108 tccaacgttaaaaaactccaactcttcaacccttcttcttcatctcttcttcttgtttttattccaccata 8062178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 24242159 - 24242226
Alignment:
Q  8 gaggtttcatgccacatgtgtattttccca-tttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    ||||| ||||||||||||||||||| |||| ||| |||||||||||||||||| ||||||||| ||||    
T  24242159 gaggtgtcatgccacatgtgtatttccccattttttttttattcaaaaagccacttgtgtaatacttg 24242226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 567 - 615
Target Start/End: Original strand, 8066913 - 8066960
Alignment:
Q  567 cttactttgaagcatcccatgtcggaaatctgtccagagaacacgtttc 615  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  8066913 cttactttgaagcatcc-atgtcgggaatctgtccagagaacacgtttc 8066960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 18876347 - 18876301
Alignment:
Q  326 agcgagtatcctcgaagttattacaagtgcacatatcctaattgtcc 372  Q
    ||||||| ||||||||||||||||||||||||  ||||||| |||||    
T  18876347 agcgagtttcctcgaagttattacaagtgcacgcatcctaactgtcc 18876301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 569
Target Start/End: Original strand, 8062125 - 8062161
Alignment:
Q  533 ccaattcttcaacccttcttcttcatctgttcttctt 569  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  8062125 ccaactcttcaacccttcttcttcatctcttcttctt 8062161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 28847561 - 28847647
Alignment:
Q  98 ttggcacgtgagagcttctaacggccaaaaactccaaccttaaaaa-ccctcaattcttcaacccttcttcttcatctgttcttctt 183  Q
    |||||||||||||| ||| |||||  |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||    
T  28847561 ttggcacgtgagagtttccaacggtaaaaaactccaaccttaaaaaccccccaattcttcaacccttcttcttcatcttttcttctt 28847647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 1389379 - 1389434
Alignment:
Q  14 tcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaat 69  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||    
T  1389379 tcatgccacatgtgtatttccccatttattttaaatcaaaaagccaattgtgtaat 1389434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 1394765 - 1394710
Alignment:
Q  14 tcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaat 69  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||    
T  1394765 tcatgccacatgtgtatttccccatttattttaaatcaaaaagccaattgtgtaat 1394710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 1394660 - 1394590
Alignment:
Q  130 tccaaccttaaaaaccctcaattcttcaacccttcttcttcatctgttcttcttgattttattccaccata 200  Q
    |||||| ||||||| |  ||| ||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  1394660 tccaacgttaaaaaactccaactcttcaacccttcttcttcatctcttcttcttgtttttattccaccata 1394590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 45413393 - 45413328
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    ||||| |||||| |||||||||||| ||||||| |||||||||||||||||| ||||||||| ||||    
T  45413393 gaggtgtcatgctacatgtgtatttccccattt-tttttattcaaaaagccacttgtgtaatacttg 45413328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 652
Target Start/End: Original strand, 28851104 - 28851185
Alignment:
Q  567 cttactttgaagcatcccatgtcggaaatctgtccagagaacacgtttcgcttgaggttgatgtaacttccatatttcgaatcttt 652  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||||  |||| ||||||| |||||||||| |||||||||||    
T  28851104 cttactttgaagcatcc-atgtcaggaatctgtccagagaacacgtttc-tttga-gttgatggaacttccata-ttcgaatcttt 28851185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 567 - 615
Target Start/End: Complemental strand, 1389860 - 1389813
Alignment:
Q  567 cttactttgaagcatcccatgtcggaaatctgtccagagaacacgtttc 615  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  1389860 cttactttgaagcatcc-atgtcgggaatctgtccagagaacacgtttc 1389813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 569
Target Start/End: Original strand, 28847608 - 28847647
Alignment:
Q  530 cccccaattcttcaacccttcttcttcatctgttcttctt 569  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  28847608 cccccaattcttcaacccttcttcttcatcttttcttctt 28847647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 45412476 - 45412543
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttt-tattcaaaaagccaattgtgtaatgcttg 74  Q
    ||||| ||||||||||||||||||| ||  ||| |||| |||||||||||||| ||||||||| ||||    
T  45412476 gaggtgtcatgccacatgtgtatttcccttttttttttttattcaaaaagccacttgtgtaatacttg 45412543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 569
Target Start/End: Complemental strand, 1394643 - 1394607
Alignment:
Q  533 ccaattcttcaacccttcttcttcatctgttcttctt 569  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  1394643 ccaactcttcaacccttcttcttcatctcttcttctt 1394607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 46313191 - 46313125
Alignment:
Q  8 gaggtttcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  46313191 gaggtgtcatgccacatgtgtattttcccatttatttttattcaaaaagccacttgtgtaatacttg 46313125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 50379883 - 50379823
Alignment:
Q  14 tcatgccacatgtgtattttcccatttatttttattcaaaaagccaattgtgtaatgcttg 74  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  50379883 tcatgccacatgtgtattttcccatttatttttattgaaaaagccaattgtgtaatacttg 50379823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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