View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5422-Insertion-6 (Length: 550)

Name: NF5422-Insertion-6
Description: NF5422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5422-Insertion-6
NF5422-Insertion-6
[»] chr1 (23 HSPs)
chr1 (6-550)||(35295111-35295658)
chr1 (343-478)||(45526140-45526275)
chr1 (405-493)||(35213583-35213671)
chr1 (335-475)||(35272851-35272991)
chr1 (339-472)||(35203115-35203248)
chr1 (343-472)||(45534344-45534473)
chr1 (339-471)||(35192775-35192907)
chr1 (405-493)||(35206425-35206513)
chr1 (405-493)||(35216972-35217060)
chr1 (343-472)||(35476933-35477062)
chr1 (347-493)||(35145170-35145316)
chr1 (388-474)||(35228428-35228514)
chr1 (26-124)||(35245283-35245380)
chr1 (405-470)||(8640315-8640380)
chr1 (340-467)||(35265294-35265421)
chr1 (405-475)||(35222789-35222859)
chr1 (6-96)||(35225306-35225396)
chr1 (427-476)||(35253958-35254007)
chr1 (399-437)||(19267395-19267433)
chr1 (339-425)||(35148863-35148949)
chr1 (33-71)||(35219490-35219528)
chr1 (33-65)||(35190762-35190794)
chr1 (33-65)||(35208528-35208560)
[»] chr2 (1 HSPs)
chr2 (403-475)||(33137636-33137708)
[»] chr3 (4 HSPs)
chr3 (394-475)||(17663857-17663938)
chr3 (394-475)||(19246358-19246439)
chr3 (388-498)||(898894-899004)
chr3 (403-475)||(53921108-53921180)
[»] chr7 (3 HSPs)
chr7 (6-64)||(38632250-38632308)
chr7 (6-90)||(38634986-38635070)
chr7 (404-449)||(38635326-38635371)


Alignment Details
Target: chr1 (Bit Score: 502; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 6 - 550
Target Start/End: Complemental strand, 35295658 - 35295111
Alignment:
Q  6 cacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctgtccaaaatttgtgtgcaaaagttgcaaagataagaatataggaaatg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  35295658 cacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctgtccaaaatttgtgtgcaaaagttgcaaagataagaatatatgaagtg 35295559  T
Q  106 agaaaagagcacatgtagacaagccagccatcagccggatgacaatgaataaaaaccaattttcgacattcctcgtcctctcatgataattgtggataga 205  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35295558 agaaaagagcacatgtagataagccagccatcagccggatgacaatgaataaaaaccaattttcgacattcctcgtcctctcatgataattgtggataga 35295459  T
Q  206 cttggaatcattatagacaacttattgttgtcacaatacaagggttcgagttgcagataaaggatttttgtgctccaagctgaattttgtgaagacaaag 305  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35295458 ctcggaatcattatagacaacttattgttgtcacaatacaaggtttcgagttgcagataaaggatttttgtgctccaagctgaattttgtgaacacaaag 35295359  T
Q  306 gtaataggtaataatataatataaacttaaaagagctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtg 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35295358 gtaataggtaataatataatataaacttaaaagagctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtg 35295259  T
Q  406 agagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttctaaagctt---attagcattttga 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||    
T  35295258 agagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttccaaagcttattattagcattttga 35295159  T
Q  503 agtttgaactattcatttgaaacaacgtacaccaactttttgtacaat 550  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  35295158 agtttgaaatattcatttgaaacaacgtacaccaactttttgtacaat 35295111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 343 - 478
Target Start/End: Original strand, 45526140 - 45526275
Alignment:
Q  343 aacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccac 442  Q
    |||||||||||| |||||| | ||||| |||||| ||| |||   ||||||||| ||||   ||||||||||||||||||||| ||||||||||| ||||    
T  45526140 aacctggaatcaggcatagcagtccagatccaatagcggtcatcatcaccccaaataatgtggagagatctagcagcaagcatgtaacacttttttccac 45526239  T
Q  443 tctttctctccaattgaaagctctgcatttcaatat 478  Q
    ||||||| ||||||||||||||||||||||||||||    
T  45526240 tctttctatccaattgaaagctctgcatttcaatat 45526275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 405 - 493
Target Start/End: Original strand, 35213583 - 35213671
Alignment:
Q  405 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttctaaagcttatta 493  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  35213583 gagagatctagcagcaagcatataacatttttttccactttttctctccaattgaaagctctgcatttcaatatttccaaagtttatta 35213671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 335 - 475
Target Start/End: Original strand, 35272851 - 35272991
Alignment:
Q  335 aaagagctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactt 434  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||   |   |||||||||  ||| |  ||||||||||||| |||||| ||||||||    
T  35272851 aaagagctaacctggaatcaggcatagaaatccagttccaatagcgtctatcatcaccccaaacaattgcaagagatctagcagaaagcatgtaacactt 35272950  T
Q  435 tttcccactctttctctccaattgaaagctctgcatttcaa 475  Q
    ||| |||||||||||||| ||||||| ||||||||||||||    
T  35272951 ttttccactctttctctctaattgaatgctctgcatttcaa 35272991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 339 - 472
Target Start/End: Original strand, 35203115 - 35203248
Alignment:
Q  339 agctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttc 438  Q
    |||||||||||||||| |||||| ||||||||||||||  || |||   | |||||||  ||| | ||||||||||||||||||||| |||||||||||     
T  35203115 agctaacctggaatcaggcatagcaatccagttccaatatcgatcatcattaccccaagcaatggagagagatctagcagcaagcatgtaacactttttt 35203214  T
Q  439 ccactctttctctccaattgaaagctctgcattt 472  Q
    ||||||||||| |||||||||| |||||||||||    
T  35203215 ccactctttctatccaattgaatgctctgcattt 35203248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 343 - 472
Target Start/End: Original strand, 45534344 - 45534473
Alignment:
Q  343 aacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccac 442  Q
    |||||||||||| |||||| |||||||||||| | ||| |     ||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||    
T  45534344 aacctggaatcaggcatagcaatccagttccagtagcggttgtcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccac 45534443  T
Q  443 tctttctctccaattgaaagctctgcattt 472  Q
    | ||||| || |||||||||||||||||||    
T  45534444 tatttctatctaattgaaagctctgcattt 45534473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 339 - 471
Target Start/End: Original strand, 35192775 - 35192907
Alignment:
Q  339 agctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttc 438  Q
    ||||||||| |||| | ||||||||||||||||||||| |||   |   |||||||||  ||| | |||||||||||||||||||||||||||||||||     
T  35192775 agctaacctagaattaggcatagaaatccagttccaatagcgtcgatcatcaccccaagcaatggagagagatctagcagcaagcatataacactttttt 35192874  T
Q  439 ccactctttctctccaattgaaagctctgcatt 471  Q
    |||||||| || |||||||||||||||| ||||    
T  35192875 ccactcttcctatccaattgaaagctctacatt 35192907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 405 - 493
Target Start/End: Original strand, 35206425 - 35206513
Alignment:
Q  405 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttctaaagcttatta 493  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||||| |||||||||||    
T  35206425 gagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcatttcaatatttccaaagcttatta 35206513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 405 - 493
Target Start/End: Original strand, 35216972 - 35217060
Alignment:
Q  405 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttctaaagcttatta 493  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||||| |||||||||||    
T  35216972 gagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcatttcaatatttccaaagcttatta 35217060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 343 - 472
Target Start/End: Original strand, 35476933 - 35477062
Alignment:
Q  343 aacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccac 442  Q
    |||||||||||| | | || ||||||||| ||||  || |||   |||||||||  ||| | ||||||||||||||||||||| ||||||||||||||||    
T  35476933 aacctggaatcaggtacagcaatccagttgcaatatcgatcatcatcaccccaagcaatggcgagagatctagcagcaagcatgtaacactttttcccac 35477032  T
Q  443 tctttctctccaattgaaagctctgcattt 472  Q
    ||||||| |||||||||| |||||||||||    
T  35477033 tctttctatccaattgaaggctctgcattt 35477062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 347 - 493
Target Start/End: Original strand, 35145170 - 35145316
Alignment:
Q  347 tggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccactctt 446  Q
    |||||||||||| || ||||||||| ||||  || |||   |||| ||||  ||| | |||||||||||||| || ||| ||||||||||| | |||||     
T  35145170 tggaatcatgcacagcaatccagttgcaatatcgatcatcatcactccaagcaatggcgagagatctagcagaaaccatgtaacacttttttctactctc 35145269  T
Q  447 tctctccaattgaaagctctgcatttcaatatttctaaagcttatta 493  Q
    ||| | |||||||||||| |||||||||||||||| |||||||||||    
T  35145270 tctattcaattgaaagctttgcatttcaatatttccaaagcttatta 35145316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 388 - 474
Target Start/End: Original strand, 35228428 - 35228514
Alignment:
Q  388 tcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttca 474  Q
    ||||||||| |||| |  ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| |||| |||||||    
T  35228428 tcaccccaagtaatggcaagagatctagcagaaagcatataacacttctttccactctttctctccaattgaaaactctacatttca 35228514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 35245283 - 35245380
Alignment:
Q  26 acagcacgaagctcagcaacttcggggaacctgtccaaaatttgtgtgcaaaagttgcaaagataagaatataggaaatgagaaaagagcacatgtaga 124  Q
    |||||| |||||||||||||||| || ||||||| ||||| |||||   ||||||||||||| |||||||||||||| ||||||||||||| |||||||    
T  35245283 acagcatgaagctcagcaacttcagg-aacctgttcaaaagttgtgcagaaaagttgcaaaggtaagaatataggaactgagaaaagagcatatgtaga 35245380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 405 - 470
Target Start/End: Original strand, 8640315 - 8640380
Alignment:
Q  405 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcat 470  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| |||||||||    
T  8640315 gagagatctagcagcaagcatgtaacacttttttccactctttctgtccaattgaacgctctgcat 8640380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 340 - 467
Target Start/End: Original strand, 35265294 - 35265421
Alignment:
Q  340 gctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcc 439  Q
    ||||||||||||||| ||| || |||||||||||| | | ||| ||  |||||||||  ||| |  ||||||||||||| |||||| ||||||||||| |    
T  35265294 gctaacctggaatcaggcaaaggaatccagttccagtagtgcttagtatcaccccaaacaattgcaagagatctagcagaaagcatgtaacacttttttc 35265393  T
Q  440 cactctttctctccaattgaaagctctg 467  Q
    |||||||||| |||||||| || |||||    
T  35265394 cactctttctgtccaattggaaactctg 35265421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 475
Target Start/End: Original strand, 35222789 - 35222859
Alignment:
Q  405 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 475  Q
    |||||||||||||||||||||   ||||||||| ||||||||||| |||||||||| |||||  |||||||    
T  35222789 gagagatctagcagcaagcatgacacacttttttccactctttctatccaattgaacgctcttaatttcaa 35222859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 35225306 - 35225396
Alignment:
Q  6 cacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctgtccaaaatttgtgtgcaaaagttgcaaagataagaata 96  Q
    ||||||||||||||||   ||||  | |||| || |||||||| || || ||||||||||||||||  |||||||||||||||||||||||    
T  35225306 cacgaatttcaagccaacacacatgaagaagttcggcaacttcaggaaatctgtccaaaatttgtgcacaaaagttgcaaagataagaata 35225396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 427 - 476
Target Start/End: Original strand, 35253958 - 35254007
Alignment:
Q  427 taacactttttcccactctttctctccaattgaaagctctgcatttcaat 476  Q
    ||||| ||||| ||||||||||| ||||||||||| ||||||||||||||    
T  35253958 taacaattttttccactctttctatccaattgaaaactctgcatttcaat 35254007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 19267433 - 19267395
Alignment:
Q  399 aatagtgagagatctagcagcaagcatataacacttttt 437  Q
    |||||||||||||||||||||||| || |||||||||||    
T  19267433 aatagtgagagatctagcagcaagaatgtaacacttttt 19267395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 425
Target Start/End: Original strand, 35148863 - 35148949
Alignment:
Q  339 agctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcat 425  Q
    |||||||||||| ||| |||||  |||||||||||||| ||||| |   |||||||||  |||  ||||||||||||||| ||||||    
T  35148863 agctaacctggagtcaggcatattaatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcagaaagcat 35148949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 35219490 - 35219528
Alignment:
Q  33 gaagctcagcaacttcggggaacctgtccaaaatttgtg 71  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  35219490 gaagctcaacaacttcagggaacctgtccaaaatttgtg 35219528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 35190762 - 35190794
Alignment:
Q  33 gaagctcagcaacttcggggaacctgtccaaaa 65  Q
    |||||||||||||||| ||||||||||||||||    
T  35190762 gaagctcagcaacttcagggaacctgtccaaaa 35190794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 35208528 - 35208560
Alignment:
Q  33 gaagctcagcaacttcggggaacctgtccaaaa 65  Q
    |||||||||||||||| ||||||||||||||||    
T  35208528 gaagctcagcaacttcagggaacctgtccaaaa 35208560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 403 - 475
Target Start/End: Complemental strand, 33137708 - 33137636
Alignment:
Q  403 gtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 475  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||| | |||||||||||||||||||||||    
T  33137708 gtgagagatctagcagcaagcatgtaacacttttgtccactctttctgtgcaattgaaagctctgcatttcaa 33137636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 394 - 475
Target Start/End: Complemental strand, 17663938 - 17663857
Alignment:
Q  394 caattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 475  Q
    |||| ||| ||||||||||||||||||||||  |||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  17663938 caatcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 17663857  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 394 - 475
Target Start/End: Complemental strand, 19246439 - 19246358
Alignment:
Q  394 caattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 475  Q
    |||| ||| ||||||||||||||||||||||  |||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  19246439 caatcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 19246358  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 498
Target Start/End: Complemental strand, 899004 - 898894
Alignment:
Q  388 tcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttca-atatttctaaag 486  Q
    ||||| |||| ||| ||||||||||| ||||||||||| |||||  |||| ||||| || || ||||||| ||||||||| |||||| ||| ||| || |    
T  899004 tcaccgcaatgaatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaatttcatata-ttcaaagg 898906  T
Q  487 cttattagcatt 498  Q
    ||||||||||||    
T  898905 cttattagcatt 898894  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 475
Target Start/End: Complemental strand, 53921180 - 53921108
Alignment:
Q  403 gtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 475  Q
    |||||||  ||||||| ||||||  |||| ||||||||||||||||| ||||||||||   ||||||||||||    
T  53921180 gtgagagccctagcagaaagcatgcaacattttttcccactctttctatccaattgaataatctgcatttcaa 53921108  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 38632250 - 38632308
Alignment:
Q  6 cacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctgtccaaa 64  Q
    |||||||||||||| | | |||| ||||||||||||||||||| |||||||||||||||    
T  38632250 cacgaatttcaagcgaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 38632308  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 38634986 - 38635070
Alignment:
Q  6 cacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctgtccaaaatttgtgtgcaaaagttgcaaagata 90  Q
    |||||||||||||| | | | ||  ||||| |||| ||||||| ||||||||||||||||||||||  |||||||||||| ||||    
T  38634986 cacgaatttcaagcgaaaacgcattacgaatctcaacaacttcagggaacctgtccaaaatttgtgcacaaaagttgcaatgata 38635070  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 449
Target Start/End: Original strand, 38635326 - 38635371
Alignment:
Q  404 tgagagatctagcagcaagcatataacactttttcccactctttct 449  Q
    |||||||| |||||||||| || ||||||||||| |||||||||||    
T  38635326 tgagagatttagcagcaagaatgtaacacttttttccactctttct 38635371  T

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