View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5422-Insertion-9 (Length: 433)
Name: NF5422-Insertion-9
Description: NF5422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5422-Insertion-9 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 128 - 433
Target Start/End: Complemental strand, 2101806 - 2101500
Alignment:
| Q |
128 |
taataacactggttacaccaccaaaaactta-gacacataagattcaaatcgggtaaaagtgttcacacctaacatgtgtagtgtctaataagttagttc |
226 |
Q |
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| T |
2101806 |
taataacactggttacaccaccaaaaacttaagacacataagattcaaatcgggtaaaagtgt-cacacctaacatgtgtagtgtctaataaattagttc |
2101708 |
T |
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| Q |
227 |
aactaaagctacaaggttaaaattgagaatgaaaaatgataaaggttataaaaaa-tcatataagccggtaaatataaactataagctcatgaaaacgtg |
325 |
Q |
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| T |
2101707 |
aactaaagctacaaggttaaaattgagaatgaaaaatgataaaggttataaaaaaatcatataagcctgtaaatataaactataagctcgtgaaaacgtg |
2101608 |
T |
|
| Q |
326 |
aaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaattttcggtttgccaaacagatcctaatcattcataaatgaagaagatgaac |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2101607 |
aaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaatttgcggtttgccaaacagatcctaatcattcataaatgaagaagatgaac |
2101508 |
T |
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| Q |
426 |
gattcacc |
433 |
Q |
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|||||||| |
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| T |
2101507 |
gattcacc |
2101500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 2102155 - 2102059
Alignment:
| Q |
37 |
ataaaccttaagagttaaacatgacgggcaactccttatagaggatatcaatacattaggatgacatttgaagtgtaatgtagtgtataaataataa |
133 |
Q |
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| T |
2102155 |
ataaaccttaggagttaaacatgatgggcaacgccttatagaggatatcaatacattaggatgacatttgaagtgtaatgtagtgtataaataataa |
2102059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 284 - 410
Target Start/End: Original strand, 39184928 - 39185054
Alignment:
| Q |
284 |
atataagccggtaaatataaactataagctcatgaaaacgtgaaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaattttcggtt |
383 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
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| T |
39184928 |
atataagccggtaaatataaactataagctcttgaaaacgtgaaaattacaaaacaaaactcttttaaaagcttataaaacataatccaaatttgcggtt |
39185027 |
T |
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| Q |
384 |
tgccaaacagatcctaatcattcataa |
410 |
Q |
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| T |
39185028 |
tgccaaacagatcctaaccattgataa |
39185054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 39184848 - 39184892
Alignment:
| Q |
224 |
ttcaactaaagctacaaggttaaaattgagaatgaaaaatgataa |
268 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39184848 |
ttcaattaaagctacaaggttaaaattgagaatgaaaaatgataa |
39184892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 39183919 - 39183970
Alignment:
| Q |
37 |
ataaaccttaagagttaaacatgacgggcaactccttatagaggatatcaat |
88 |
Q |
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|||||||||| |||||||| | |||||||||| ||||||||||||||||||| |
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| T |
39183919 |
ataaaccttaggagttaaatacgacgggcaacaccttatagaggatatcaat |
39183970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 39184394 - 39184433
Alignment:
| Q |
128 |
taataacactggttacaccaccaaaaacttagacacataa |
167 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |
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| T |
39184394 |
taataacactagttacaccaccaaaaacttagacacataa |
39184433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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