View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5422_high_2 (Length: 241)
Name: NF5422_high_2
Description: NF5422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5422_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 30991425 - 30991189
Alignment:
| Q |
2 |
agagctatgttttctggatcagaagtatgtgaatgaattgacaatgaagggaaaaggtgttccgactcaagatgattggaaacctgtcagggaaatcctt |
101 |
Q |
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| T |
30991425 |
agagctgtgttttctggatcagaagtatgtgaatgaattgacaacgaagggaaaaggtgtgccgactcaagatgattggaaacgtgtcagggaaatcctt |
30991326 |
T |
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| Q |
102 |
ccaatcttgaaaatgttttatgatgctactgtacgcatatcaggttcgtcttatttaacaagcaatatttatatgtttgagatccttggtattgggaaaa |
201 |
Q |
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| T |
30991325 |
ccattcttgaaaatgttttatgatgctactgtacgcatatcaggttcgtcttatttaacaagcaatatttatatgtttgagatccttggtattgggaaaa |
30991226 |
T |
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| Q |
202 |
ggatagttgaaatgtgcagctctgatgatgtccatct |
238 |
Q |
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| T |
30991225 |
ggatagttgaaatgtgcagctctgaggatgttcatct |
30991189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 43072220 - 43072456
Alignment:
| Q |
2 |
agagctatgttttctggatcagaagtatgtgaatgaattgacaatgaagggaaaaggtgttccgactcaagatgattggaaacctgtcagggaaatcctt |
101 |
Q |
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| T |
43072220 |
agagctgtgttttctggatcagaagtatgtgaatgaattgacaacgaagggaaaaggtgtgccgactcaagatgattggaaacgtgtcagggaaatcctt |
43072319 |
T |
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| Q |
102 |
ccaatcttgaaaatgttttatgatgctactgtacgcatatcaggttcgtcttatttaacaagcaatatttatatgtttgagatccttggtattgggaaaa |
201 |
Q |
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| T |
43072320 |
ccattcttgaaaatgttttatgatgctactgtacgcatatcaggttcgtcttatttaacaagcaatatttatatgtttgagatccttggtattgggaaaa |
43072419 |
T |
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| Q |
202 |
ggatagttgaaatgtgcagctctgatgatgtccatct |
238 |
Q |
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| T |
43072420 |
ggatagttgaaatgtgcagctctgaggatgttcatct |
43072456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 4458312 - 4458082
Alignment:
| Q |
2 |
agagctatgttttctggatcagaagtatgtgaatgaattgacaatgaagggaaaaggtgttccgactcaagatgattggaaacctgtcagggaaatcctt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4458312 |
agagctatgttttctggatcagaagtatgtgaatgaattgacaatgaaaggaaaaggtgttccgactcaagatgattggaaacctgtcagggaaatcctt |
4458213 |
T |
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| Q |
102 |
ccaatcttgaaaatgttttatgatgctactgtacgcatatcaggttcgtcttatttaacaagcaatatttatatgtttgagatccttggtattgggaaaa |
201 |
Q |
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| T |
4458212 |
ccattcttgaaaatgttttatgatgctactgtacgcatatcaggtccgtcttatttaacaggtaatatttatatgtttcagatccttggtattgggaaaa |
4458113 |
T |
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| Q |
202 |
ggatagttgaaatgtgcagctctgatgatgt |
232 |
Q |
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| T |
4458112 |
ggatagttgaaatgtgcagctctgaggatgt |
4458082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 33132938 - 33133125
Alignment:
| Q |
51 |
ggaaaaggtgttccgactcaagatgattggaaacctgtcagggaaatccttccaatcttgaaaatgttttatgatgctactgtacgcatatcaggttcgt |
150 |
Q |
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||||||||||| | |||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
33132938 |
ggaaaaggtgtgctgactcaagatgattggaaacgtgtcagggaaatccttccattcttgaaattgttttatgatgctacaatacgcatatcaggttcgt |
33133037 |
T |
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| Q |
151 |
cttatttaacaagcaatatttatatgtttgagatccttggtattgggaaaaggatagttgaaatgtgcagctctgatgatgtccatct |
238 |
Q |
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| T |
33133038 |
cttatttaacaaggaatatttatatgtttgagatccttggtattgggaaaaggattgttgaaatgtgcagctctgaggatgttcatct |
33133125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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