View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5422_low_1 (Length: 288)
Name: NF5422_low_1
Description: NF5422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5422_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 4459459 - 4459722
Alignment:
| Q |
11 |
cacagagcagaaattaagagataaattactgttattgaagaggaataattagctattaattcggtcaaaagataaagtagctttgatcaattaatgtatc |
110 |
Q |
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| T |
4459459 |
cacaaagcagaaattaagagataaattactgttattgaagaggaatgagtagctattaattctgtcaaaagataaagtagctttgatcaattaatgtatc |
4459558 |
T |
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| Q |
111 |
actctatatgtgacaatatatatcatctggctaactaatttagttgcatccagtaatttcactttctattaatgctatactcattcacctcgttgtaaac |
210 |
Q |
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| T |
4459559 |
actctatatgtgacaatatatatcatctggctaactaatttagttacatccagtaatttcactttctattaattctatactcattcaccccgttgtaaac |
4459658 |
T |
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| Q |
211 |
tttatttatggtcacttgctacatcaaattaaacacatcctcattttatgctacttgtgaagaa |
274 |
Q |
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| T |
4459659 |
tttatttatggtcacttgctacatcaaattaaacacattctcattttatgctacttgtgaagaa |
4459722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 39 - 268
Target Start/End: Original strand, 35013351 - 35013583
Alignment:
| Q |
39 |
ctgttattgaagaggaataattagct---attaattcggtcaaaagataaagtagctttgatcaattaatgtatcactctatatgtgacaatatatatca |
135 |
Q |
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| T |
35013351 |
ctgttattgaagaggaataagtagctttgattaattctgtcaaaagataaagtagctttgatcaattaatgtatcactctatatgtgacaatatatatca |
35013450 |
T |
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| Q |
136 |
tctggctaactaatttagttgcatccagtaatttcactttctattaatgctatactcattcacctcgttgtaaactttatttatggtcacttgctacatc |
235 |
Q |
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| T |
35013451 |
tctggctaactaatttagttgcatccagtaatgtcactttctattaattctatactcattcatctcgttctaaactttatttatggtcacttgctacatc |
35013550 |
T |
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| Q |
236 |
aaattaaacacatcctcattttatgctacttgt |
268 |
Q |
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| T |
35013551 |
aaattaaacacatcctcattttatgctacttgt |
35013583 |
T |
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