View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5423-Insertion-1 (Length: 1043)
Name: NF5423-Insertion-1
Description: NF5423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5423-Insertion-1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 399 - 1040
Target Start/End: Complemental strand, 20362896 - 20362250
Alignment:
| Q |
399 |
agaaaagtgaggtaaaatttgcatattatgtaatggtggaaatgcaggaaaaacagaatgtaaaccagagttctttgaactcctaaaccagagagaaatt |
498 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20362896 |
agaaaagtgaggtaaaaattgcatattatgtaatggtggaaatgcaggaaaaacagaatgtaaaccagagttctttgaactcctaaaccagagagaaatt |
20362797 |
T |
|
| Q |
499 |
tctcctaactgactctaacgacttaacagaatgagtcacacattacccttgcacctaatgccactactctccttcatttcccagcttaacagtgcccctt |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20362796 |
tctcctaactgactctaacgacttaacagaatgagtcacacattacccttgcacctaatgccactactctccttcatttcccagcttaacagtgcccctt |
20362697 |
T |
|
| Q |
599 |
gaaacgtttactatgataaacattccaaaaatggggtctatttcctcatggtccctaacaagaacacaatttccctaatttaccaccagctaggagtatt |
698 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
20362696 |
gaaacgtttactatgataaacattccaaaaatggggtctatttcctcatggtccctaacaaaaacacaatttccctaatttaccaccagctaggagtatt |
20362597 |
T |
|
| Q |
699 |
ttcaactagtgccatggacgattgcagtggcagatttannnnnnnnnnnnnacagccgtgtggccaatttgtgaaggatagtggcacaatggcagatttt |
798 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
20362596 |
ttcaactagtgccatggacgattgcagtggcagatttatttttatttttttacagccgtgtggccaatttgtgaaggatagtggcacaagggcagatttt |
20362497 |
T |
|
| Q |
799 |
ttgttaacttgataacaccaaaatccaaaacatgaaannnnnnnnnnnnnnnnncccaaatatcaaaccacaaaggcaagaagatcacattaacttaatt |
898 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20362496 |
ttgttaacttgataacaccaaaatccaaaacatgaaaagaggagagagagagagcccaaatatcaaaccacaaaggcaagaagatcacattaacttaatt |
20362397 |
T |
|
| Q |
899 |
tcagagatctaatacacggtttcagcatt-cac-atcatgaattatgagacatgaatttagcaatggaagtaataaatgactgtgacataacaacttcta |
996 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20362396 |
tcagagatctaatacacggtttcagcattccacaatcatgaattatgagacatgaatttagcaatggaagtaataaatgactgtgacataacaacttcta |
20362297 |
T |
|
| Q |
997 |
gtca-tcaatgggagcagac--tatggttcgcggatcaaattaaaaa |
1040 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
20362296 |
gtcattcaatgggagcagacataatggttcgcggatcaaattaaaaa |
20362250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 332 - 422
Target Start/End: Complemental strand, 20363057 - 20362967
Alignment:
| Q |
332 |
ggaaatatcttagtgacatattactagtaagatatttactttgcttctaacgaatgtcattagatcaagaaaagtgaggtaaaatttgcat |
422 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20363057 |
ggaaatatcttagtgacatattagtagtaagatatttactttgcttctaacgaatgtcattagatcaagaaaagtgaggtaaaatttgcat |
20362967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 20363331 - 20363243
Alignment:
| Q |
141 |
aattgaaggtcttgctttcttcggagaaagtggattggagcataggaaataaataattttaatgtaagttgtttgattcaattttttga |
229 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20363331 |
aattgaaggtcttgctttcttgggagaaagtggatgggagcataggaaataaataattttaatgtaagttgtttgattcaattttttga |
20363243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 20363167 - 20363127
Alignment:
| Q |
222 |
ttttttgacaatacaagtcattattttctactattatgagc |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20363167 |
ttttttgacaatacaagtcattattttctactattatgagc |
20363127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 482 - 1010
Target Start/End: Complemental strand, 21550529 - 21549986
Alignment:
| Q |
482 |
taaaccagagagaaa-tttctcctaactgactctaacgacttaacagaatgagtcacacattacccttgcacctaatgccactactctccttcatttccc |
580 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
21550529 |
taaaccagagaaaaaatttctcctaactgactctaacgacttaacagaatgagtcacacattaccctcgcacctaatgccactactctccctcatttccc |
21550430 |
T |
|
| Q |
581 |
agcttaacagtgccccttgaaacgtttactatgataaacattccaaaaatggggtctatttcctcatggtccctaacaagaacacaatttccctaattta |
680 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21550429 |
agcttaacagtgccccttgaaacgtttactaagataaacattccaaaaatggggtctatttcctcatggtccctaacaaaaacacaatttccctaattta |
21550330 |
T |
|
| Q |
681 |
ccaccagctaggagtattttcaactagtgccatggacgattgcagtggcagatttannnnnnnnnnnnnacagccgtgtggccaatttgtgaaggatagt |
780 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
21550329 |
ccaccagc-aagagtattttcaactagtgccatggacgattgcagtggcggattt-------tttttttacaaccgtgtggccaatttgtgaaggatagt |
21550238 |
T |
|
| Q |
781 |
ggcacaatggcagattttttgttaac------------ttgataacaccaaaatccaaaacatgaaannnnnnnnnnnnnnnnncccaaatatcaaacca |
868 |
Q |
| |
|
||||| | |||||||||||||||| | |||||||||||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
21550237 |
ggcaccagggcagattttttgttatcctccatatgtgattgataacaccaaaatccaagatatgaaa--agaggggagagagagcccaaatatcaaacca |
21550140 |
T |
|
| Q |
869 |
caaaggcaagaagatcacattaacttaatttcag---------agatctaatacacggtttcagcatt-cac-atcatgaattatgagacatgaa--ttt |
955 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| || ||| |||||||||||||||||||||| ||| |
|
|
| T |
21550139 |
caaaggca--aagatcacgttaacttaatttcagatcaggttaagatctaatacacggtttcagctttccacaatcatgaattatgagacatgaattttt |
21550042 |
T |
|
| Q |
956 |
agcaatggaagtaataaatgactgtgacataacaacttctagtca-tcaatgggag |
1010 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
21550041 |
agcaatggaagtaataaatgactatgacataacaacttggagtcattcaatgggag |
21549986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 430 - 468
Target Start/End: Complemental strand, 21550558 - 21550520
Alignment:
| Q |
430 |
aatggtggaaatgcaggaaaaacagaatgtaaaccagag |
468 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21550558 |
aatggtggaaatgcaggaaaaacaaaatgtaaaccagag |
21550520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 430 - 806
Target Start/End: Complemental strand, 32195061 - 32194702
Alignment:
| Q |
430 |
aatggtggaaatgcaggaaa-aacagaatgtaaaccagagttctttgaactcctaaaccagagagaaatttctcctaactgactctaacgac---ttaac |
525 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32195061 |
aatggtggaaatgcaggaaataacagaatgtaaaccagagttgtgtgaactcctaaaccagagagaaatttctcctaactgactctaacgacgacttaac |
32194962 |
T |
|
| Q |
526 |
agaatgagtcacacattacccttgcacctaatgccactactctccttcatttcccagcttaacagtgccccttgaaacgtttactatgataaacattcca |
625 |
Q |
| |
|
||||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32194961 |
agaatgagtgacacattaccgtcgcacctaatgccactactctccttcattccccagcttaacagtgccccttgaaacgtttactatgataaacattcca |
32194862 |
T |
|
| Q |
626 |
aaaatggggtctatttcctcatggtccctaacaagaacacaatttccctaatttaccacc----agctaggagtattttcaactagtgccatggacgatt |
721 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32194861 |
aaaatggggtctatttcctcatg--------------------ttccctaatttaccaccagctagctaggagtatttttaactagtgccatggacgatt |
32194782 |
T |
|
| Q |
722 |
gcagtggcagatttannnnnnnnnnnnnacagccgtgt-ggccaatttgtgaaggatagtggcacaatggcagattttttgttaac |
806 |
Q |
| |
|
||||||| ||||||| |||||||||| |||||||||||||||||||||||||| | || ||||||||||||||| |
|
|
| T |
32194781 |
gcagtggaagattta------tttttttacagccgtgtgggccaatttgtgaaggatagtggcaccagggaagattttttgttaac |
32194702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 431 - 534
Target Start/End: Complemental strand, 24364364 - 24364262
Alignment:
| Q |
431 |
atggtggaaatgcaggaaaaacagaatgtaaaccagagttctttgaactcctaaaccagagagaaatttctcctaactgactctaacgacttaacagaat |
530 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||| ||| || ||||| |
|
|
| T |
24364364 |
atggtggaaatgcaggaaaa-cggaatgtaaaccagagttctatgaactcctaaaccagaaagaaatccctcctaactgactctaacaactcaaaagaat |
24364266 |
T |
|
| Q |
531 |
gagt |
534 |
Q |
| |
|
|||| |
|
|
| T |
24364265 |
gagt |
24364262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 446 - 491
Target Start/End: Complemental strand, 35674624 - 35674579
Alignment:
| Q |
446 |
gaaaaacagaatgtaaaccagagttctttgaactcctaaaccagag |
491 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
35674624 |
gaaaaacagaatgtaaaccagagttttaggaactcctaaaccagag |
35674579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 7e-24; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 44314517 - 44314447
Alignment:
| Q |
4 |
aacacttgtggatgtaaaaagcaacttgggtagtgatttttatgtggtttttgtatcattatccattgaataa |
76 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44314517 |
aacatttgtggatgtaaaaagcaacttgggtagtgattt--atgtggtttttgtatcattatccattgaataa |
44314447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 44314337 - 44314246
Alignment:
| Q |
140 |
aaattgaaggtcttgctttcttcgg-agaaagtggattggagcataggaaataaataattttaatgtaagttgtttg-attcaattttttga |
229 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| ||||||||||||| ||| |||||||||||||||| |||| ||| |||||||||| |
|
|
| T |
44314337 |
aaattgaaggtcttgctttctttgggagaaagtggatgggagcataggaaagaaacaattttaatgtaagttatttgaatttaattttttga |
44314246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 44314087 - 44314026
Alignment:
| Q |
334 |
aaatatcttagtgacatattactagtaagatatttactttgcttctaacgaatgtcattaga |
395 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
44314087 |
aaatatcttagagacgtattactagtaagatatatactttgtttctaacgcatgtcattaga |
44314026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 853 - 890
Target Start/End: Complemental strand, 44313778 - 44313741
Alignment:
| Q |
853 |
cccaaatatcaaaccacaaaggcaagaagatcacatta |
890 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44313778 |
cccaaatatcaaacgacaaaggcaagaagatcacatta |
44313741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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