View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5423_low_2 (Length: 313)
Name: NF5423_low_2
Description: NF5423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5423_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 3661548 - 3661260
Alignment:
| Q |
17 |
acaagacaatatggaattgatgacaagaaattatgaaacataccagaacaactcttgtgaacataaagcttgtatatgaggacaataaggccaataatat |
116 |
Q |
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| T |
3661548 |
acaagacaatatggaattgatgacaagaaattatgaaacttaccagaacaactcttgtgaacataaagcttgtatatgaggacaataaggccaataatat |
3661449 |
T |
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| Q |
117 |
ggactgtttcagaggctttgaagaaaaaatttggctctctgatagtatgctttagaaccacaatagcacaaaaagcaagcaatattcccaaaaagatctt |
216 |
Q |
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| T |
3661448 |
ggactgtttcagaggctttgaagaaaaaatttggctctctgatagtatgctttagaaccacaatagcacaaaaagcaagcaatattcccaaaaagatctt |
3661349 |
T |
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| Q |
217 |
cactttcattgatcttttcctcagccatccaaacataacattcactggtgagtccctctttgatcccattttctatccaaagaataata |
305 |
Q |
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| T |
3661348 |
cactttcattgatcttttcctcagccatccaaacataacattcaccggtgaatccctctttgatcccattttctatccaaagaataata |
3661260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 42 - 288
Target Start/End: Complemental strand, 3675889 - 3675643
Alignment:
| Q |
42 |
agaaattatgaaacataccagaacaactcttgtgaacataaagcttgtatatgaggacaataaggccaataatatggactgtttcagaggctttgaagaa |
141 |
Q |
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|||||||| |||| ||||||| ||| |||| ||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||| |
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| T |
3675889 |
agaaattaaaaaacttaccagagcaagtcttctgagcatagagcttgtatatgaggacaataaggccaacgatatggattgtttcagatacttggaagaa |
3675790 |
T |
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| Q |
142 |
aaaatttggctctctgatagtatgctttagaaccacaatagcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgatcttttcctcagc |
241 |
Q |
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| T |
3675789 |
aaaatttggatctctgatggtaaactttagagccaccaaagcagaaaatgcaagcaatattcccaaaaagattttcactttcattgatctcttcctcaac |
3675690 |
T |
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| Q |
242 |
catccaaacataacattcactggtgagtccctctttgatcccatttt |
288 |
Q |
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| T |
3675689 |
catatagacaaaacattcacaggggaatccctctttgatcccatttt |
3675643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 83 - 288
Target Start/End: Complemental strand, 3683285 - 3683080
Alignment:
| Q |
83 |
agcttgtatatgaggacaataaggccaataatatggactgtttcagaggctttgaagaaaaaatttggctctctgatagtatgctttagaaccacaatag |
182 |
Q |
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| T |
3683285 |
agcttgtatacaaggactacaaggccaataatatggattgatccagaggctatgtagaaaaaatgagggtctgtgatagtatgctttagaatcaccacag |
3683186 |
T |
|
| Q |
183 |
cacaaaaagcaagcaatattcccaaaaagatcttcactttcattgatcttttcctcagccatccaaacataacattcactggtgagtccctctttgatcc |
282 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| || || |||| |||||||| || ||||||||||| | |||||||||||||| |
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| T |
3683185 |
cacaaaaagcaagcaatattcccaacaagatcttcactttcattgacctcttactcaaccatccaatcaaaacattcactgcaaaatccctctttgatcc |
3683086 |
T |
|
| Q |
283 |
catttt |
288 |
Q |
| |
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|||||| |
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| T |
3683085 |
catttt |
3683080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 42 - 288
Target Start/End: Complemental strand, 3666423 - 3666177
Alignment:
| Q |
42 |
agaaattatgaaacataccagaacaactcttgtgaacataaagcttgtatatgaggacaataaggccaataatatggactgtttcagaggctttgaagaa |
141 |
Q |
| |
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|||||||| |||| ||||||| ||| |||||||||||| ||||| ||||||||| ||| ||| |||| |||||||| ||| | |||||| || |||| |
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| T |
3666423 |
agaaattaagaaatttaccagagcaagacttgtgaacatagagcttatatatgagggcaaaaagaccaagaatatggattgtgtttgaggctatgtagaa |
3666324 |
T |
|
| Q |
142 |
aaaatttggctctctgatagtatgctttagaaccacaatagcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgatcttttcctcagc |
241 |
Q |
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|| | | | ||| ||||||| ||| ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | |
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| T |
3666323 |
taattctagatctttgatagttaacttgagagtcaccacagcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgacctattcctcaac |
3666224 |
T |
|
| Q |
242 |
catccaaacataacattcactggtgagtccctctttgatcccatttt |
288 |
Q |
| |
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|| | | ||| |||||||| || || ||| |||||||||||||||| |
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| T |
3666223 |
cagctagacaatacattcacgggagaatccttctttgatcccatttt |
3666177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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