View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5423_low_4 (Length: 238)
Name: NF5423_low_4
Description: NF5423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5423_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 42256428 - 42256208
Alignment:
| Q |
2 |
attcatttgcatgtgacatcgccatagatagctgttgaaaaatctaaatttgatgatattgattttcattacaatgtgatcacaaagtgttaatatttca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42256428 |
attcatttgcatgtgacatcgccatagatagctgttgaaaaatctaaatttgatgatattgattttcattacaatgtgatcacaaagtgttaatatttca |
42256329 |
T |
|
| Q |
102 |
ggtggattggttgtactttgtttcctttttagttgtggccattggtctcatcatttattctacaacgtatgtttgttttttacattaagctaaattttta |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42256328 |
ggtggattggttgtactttgtttcctttttagttgtggccattggtctcatcatttattctacaacgtatgtttgttttttacattaagctaaattttta |
42256229 |
T |
|
| Q |
202 |
ttatagtgcaattataatttt |
222 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
42256228 |
ttatagtgcaattataatttt |
42256208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 42261875 - 42261693
Alignment:
| Q |
1 |
tattcatttgcatgtgacatcgccatagatagctgttgaaaaatctaaatttgatgatattgattttcattacaatgtgatcacaaagtgttaatatttc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||| | |||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42261875 |
tattcatttgcacgtgacatcgccatagtt----gttgaaaaatctaaatatgatgatattaattttcattacaatgtgatcacgaagtgttaatatttc |
42261780 |
T |
|
| Q |
101 |
aggtggattggttgtactttgtttcctttttagttgtggccattggtctcatcatttattctacaacgtatgtttgttttttacatt |
187 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42261779 |
aggtggattggttgtacttcgtttcctttttagttgtgggcattggtctcatcatttattctacaacgtatgtttgttttttacatt |
42261693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University