View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5423_low_5 (Length: 223)

Name: NF5423_low_5
Description: NF5423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5423_low_5
NF5423_low_5
[»] chr7 (12 HSPs)
chr7 (27-207)||(30405770-30405950)
chr7 (111-204)||(24596846-24596939)
chr7 (140-207)||(21545698-21545765)
chr7 (140-207)||(29544696-29544763)
chr7 (140-207)||(20017130-20017196)
chr7 (132-207)||(23125077-23125152)
chr7 (128-185)||(4828986-4829043)
chr7 (140-201)||(22067674-22067735)
chr7 (161-207)||(12358655-12358701)
chr7 (152-206)||(20470693-20470747)
chr7 (140-193)||(10670446-10670499)
chr7 (157-193)||(8308924-8308960)
[»] chr1 (14 HSPs)
chr1 (48-207)||(52271024-52271183)
chr1 (125-207)||(26854176-26854258)
chr1 (134-207)||(25494354-25494427)
chr1 (111-207)||(21548824-21548920)
chr1 (140-207)||(11769865-11769932)
chr1 (140-206)||(30675662-30675727)
chr1 (125-207)||(19257662-19257742)
chr1 (125-200)||(25665626-25665701)
chr1 (143-207)||(9328344-9328407)
chr1 (125-193)||(25126670-25126738)
chr1 (152-207)||(25727792-25727847)
chr1 (152-207)||(25736200-25736255)
chr1 (129-207)||(15298731-15298808)
chr1 (152-192)||(18300886-18300926)
[»] chr2 (9 HSPs)
chr2 (48-207)||(14921817-14921977)
chr2 (125-207)||(34063697-34063779)
chr2 (128-192)||(27417122-27417186)
chr2 (129-191)||(18818894-18818956)
chr2 (127-193)||(22525678-22525744)
chr2 (140-207)||(17415035-17415101)
chr2 (125-207)||(1732727-1732809)
chr2 (125-207)||(18236159-18236241)
chr2 (140-193)||(16593622-16593675)
[»] chr3 (8 HSPs)
chr3 (129-207)||(19219071-19219149)
chr3 (111-204)||(19542966-19543059)
chr3 (111-204)||(18474349-18474442)
chr3 (153-204)||(10341966-10342017)
chr3 (152-191)||(11475039-11475078)
chr3 (152-207)||(28422629-28422683)
chr3 (159-204)||(19285277-19285322)
chr3 (140-193)||(25883293-25883346)
[»] chr4 (14 HSPs)
chr4 (51-207)||(29437647-29437794)
chr4 (125-207)||(31859757-31859839)
chr4 (125-207)||(21077409-21077491)
chr4 (111-202)||(13064607-13064698)
chr4 (140-207)||(17187349-17187416)
chr4 (125-207)||(33519206-33519288)
chr4 (129-194)||(20985253-20985318)
chr4 (140-192)||(15192394-15192446)
chr4 (152-207)||(47024649-47024703)
chr4 (140-186)||(1695718-1695764)
chr4 (133-191)||(5906627-5906685)
chr4 (125-183)||(23353818-23353876)
chr4 (140-189)||(18898176-18898225)
chr4 (140-193)||(34864167-34864220)
[»] scaffold0011 (1 HSPs)
scaffold0011 (129-192)||(228047-228110)
[»] chr8 (17 HSPs)
chr8 (45-207)||(11437596-11437759)
chr8 (152-207)||(13583403-13583458)
chr8 (130-207)||(29291946-29292023)
chr8 (128-196)||(22894391-22894459)
chr8 (140-192)||(28902280-28902332)
chr8 (140-207)||(28901221-28901287)
chr8 (125-207)||(30543937-30544020)
chr8 (129-207)||(30850960-30851038)
chr8 (140-205)||(14424684-14424749)
chr8 (152-207)||(28291984-28292039)
chr8 (125-207)||(32239464-32239546)
chr8 (152-193)||(11310139-11310180)
chr8 (125-174)||(12357688-12357737)
chr8 (125-174)||(12358816-12358865)
chr8 (52-85)||(18771230-18771263)
chr8 (140-192)||(16052148-16052200)
chr8 (125-207)||(31436649-31436727)
[»] chr6 (8 HSPs)
chr6 (125-207)||(26499703-26499785)
chr6 (140-207)||(30355493-30355560)
chr6 (144-207)||(33638262-33638325)
chr6 (145-207)||(33638381-33638443)
chr6 (140-192)||(17860320-17860372)
chr6 (125-207)||(12972241-12972323)
chr6 (121-199)||(14768128-14768206)
chr6 (140-193)||(15575114-15575167)
[»] scaffold0190 (1 HSPs)
scaffold0190 (140-206)||(11569-11635)
[»] chr5 (13 HSPs)
chr5 (111-189)||(22643747-22643825)
chr5 (130-206)||(19763747-19763823)
chr5 (152-207)||(7742753-7742808)
chr5 (137-207)||(19331686-19331756)
chr5 (128-204)||(23157663-23157739)
chr5 (140-207)||(18452683-18452750)
chr5 (140-207)||(26329941-26330007)
chr5 (158-207)||(11274219-11274268)
chr5 (122-183)||(18872905-18872966)
chr5 (153-201)||(12339899-12339947)
chr5 (127-207)||(18178278-18178358)
chr5 (160-204)||(20694819-20694863)
chr5 (157-193)||(24130818-24130854)
[»] scaffold0650 (1 HSPs)
scaffold0650 (143-207)||(5644-5707)
[»] scaffold0171 (1 HSPs)
scaffold0171 (155-207)||(21574-21626)
[»] scaffold0188 (1 HSPs)
scaffold0188 (152-207)||(26838-26893)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 27 - 207
Target Start/End: Complemental strand, 30405950 - 30405770
Alignment:
Q  27 gcatggcagatgacttggtgtgcaggggcgcatgaggcaacacctcctgcacgaattctatagtttttgatatttttcaaacactctttcgtcatgtgat 126  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30405950 gcatggcagatgacttggtgtgcaggggcgcatgaggcagcacctcctgcacgaattctgtagtttttgatatttttcaaacactctttcgtcatgtgat 30405851  T
Q  127 gccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  30405850 gccttggaatttcaaacgaattgtattcactttgtattgtattcaaataccttctaagaatcattgaacttcaatcttcat 30405770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 24596846 - 24596939
Alignment:
Q  111 tctttcgtcatgtgatgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatctt 204  Q
    ||||||||| ||  ||||||||||| |||||||||||| | ||||||||||||||| |||||||  |||||| |||||| |||| |||||||||    
T  24596846 tctttcgtcttgcaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaatttcttctatgaaccactgaacttcaatctt 24596939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 21545698 - 21545765
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| | |||||||| |||||| ||||||||| ||||||||||||||||  ||||||||||||    
T  21545698 aaatgaattttcttcactttttattgtcttcaaatactttctaagaaccattgatcttcaatcttcat 21545765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 29544763 - 29544696
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| | ||||||||||||||| |||||| |||||||||||| ||||||  ||||||||||||    
T  29544763 aaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaatcattgatcttcaatcttcat 29544696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 20017196 - 20017130
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| | ||||||||||||||| |||||  |||||||||||||||||| | ||||||||||||    
T  20017196 aaatgaattttcttcactttgtattgtcttcaagaaccttctaagaaccattg-agttcaatcttcat 20017130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 23125152 - 23125077
Alignment:
Q  132 ggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||| ||||||||| | ||||||||||||||| || ||  | ||| |||||||||||||| ||||||||||||    
T  23125152 ggaatttgaaatgaattttcttcactttgtattgtctttaagaatcttataagaaccattgaacttcaatcttcat 23125077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 4829043 - 4828986
Alignment:
Q  128 ccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaaga 185  Q
    |||||||| || ||||||||| | ||||||||||||||| |||||||| |||||||||    
T  4829043 ccttggaacttgaaatgaattatcttcactttgtattgtcttcaaataacttctaaga 4828986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 22067674 - 22067735
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaat 201  Q
    ||||||||| | ||||||||||||||| |||||  |||||||||||||| |||| |||||||    
T  22067674 aaatgaattcttttcactttgtattgtcttcaacaaccttctaagaacccttgattttcaat 22067735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 12358655 - 12358701
Alignment:
Q  161 tattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    |||||| |||||| |||||||||||||||||||  ||||||||||||    
T  12358655 tattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcat 12358701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 20470693 - 20470747
Alignment:
Q  152 ttcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttca 206  Q
    |||| |||||||||| |||||  |||||||||||||||||||| |||||| ||||    
T  20470693 ttcattttgtattgtcttcaagaaccttctaagaaccattgaacttcaatattca 20470747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 10670446 - 10670499
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattga 193  Q
    |||||| || ||||||||||||||||| ||  || |||||||||||||||||||    
T  10670446 aaatgatttttattcactttgtattgtcttagaaaaccttctaagaaccattga 10670499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 8308924 - 8308960
Alignment:
Q  157 tttgtattgtattcaaataccttctaagaaccattga 193  Q
    |||||||||| |||||| |||||||||||||||||||    
T  8308924 tttgtattgtcttcaaagaccttctaagaaccattga 8308960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 52271024 - 52271183
Alignment:
Q  48 gcaggggcgcatgaggcaacacctcctgcacgaattctatagtttttgatatttttcaaacactctttcgtcatgtgatgccttggaatttcaaatgaat 147  Q
    |||||||||||| ||||||| |||| ||||||||||| | |||||||||   |||||   |  |||| |||| ||  || ||||||||||| ||||||||    
T  52271024 gcaggggcgcataaggcaacccctcttgcacgaattcaacagtttttgacccttttcgcccgttcttccgtcttgcaattccttggaatttgaaatgaat 52271123  T
Q  148 tgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    | | ||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  52271124 tttcttcactttgtattgtcttcaaataccttctaagtaccattgaacttcaatcttcat 52271183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 26854176 - 26854258
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||||| |||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||    
T  26854176 atgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcttcat 26854258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 25494354 - 25494427
Alignment:
Q  134 aatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||| ||||||||| | ||||||||||||||| |||||| ||||||||||||||||||   ||||||||||||    
T  25494354 aatttgaaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatcttcat 25494427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 21548920 - 21548824
Alignment:
Q  111 tctttcgtcatgtgatgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| ||| ||||||||||| |||||||||||| | ||||  ||||||| | |||||||  ||||||||||||||| |  ||||||||||||    
T  21548920 tctttcgtcttgtaatgccttggaacttcaaatgaatttttttcaacttgtattatcttcaaatgtcttctaagaaccatttagcttcaatcttcat 21548824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 11769865 - 11769932
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| | ||||||||||||||| |||||| ||||||||||||||||||   ||||||||||||    
T  11769865 aaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatcttcat 11769932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 30675727 - 30675662
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttca 206  Q
    ||||||||| | ||||||||||||| | |||||| |||||||||||||||||| |||||||||||||    
T  30675727 aaatgaattttcttcactttgtattatcttcaaaaaccttctaagaaccattg-atttcaatcttca 30675662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 19257662 - 19257742
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||||| || |||| |||| | ||||||||||||||| |||||| |||||||||||||  ||||  ||||||||||||    
T  19257662 atgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaac--ttgatgttcaatcttcat 19257742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 25665626 - 25665701
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaa 200  Q
    ||||||||||| ||||||||| || | ||||||||||||||| || |||||  || |||||||||||||| |||||    
T  25665626 atgccttggaacttcaaatgatttttcttcactttgtattgtctttaaatattttataagaaccattgaacttcaa 25665701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 9328407 - 9328344
Alignment:
Q  143 tgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    |||||| | ||||||| ||||||| |||||| ||||||||||||| |||||| ||||||||||||    
T  9328407 tgaattttcttcacttagtattgtcttcaaaaaccttctaagaacgattgaa-ttcaatcttcat 9328344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 25126738 - 25126670
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattga 193  Q
    ||||||||||| || ||||||||| | |||| ||||||||||||||||| |  |||||||||| |||||    
T  25126738 atgccttggaacttgaaatgaattttcttcattttgtattgtattcaaagattttctaagaactattga 25126670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 25727792 - 25727847
Alignment:
Q  152 ttcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| ||||| |||||| |||||| ||||||||||||  ||||||||||||    
T  25727792 ttcactttggattgtcttcaaaaaccttccaagaaccattgatcttcaatcttcat 25727847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 25736200 - 25736255
Alignment:
Q  152 ttcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| ||||| |||||| |||||| ||||||||||||  ||||||||||||    
T  25736200 ttcactttggattgtcttcaaaaaccttccaagaaccattgatcttcaatcttcat 25736255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 15298731 - 15298808
Alignment:
Q  129 cttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||| || ||||||||| ||||||| ||||||||  |||||||| ||| |||||||||||||  || |||||||||    
T  15298731 cttggaacttgaaatgaattttattcacattgtattgc-ttcaaataacttttaagaaccattgatcttgaatcttcat 15298808  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 18300886 - 18300926
Alignment:
Q  152 ttcactttgtattgtattcaaataccttctaagaaccattg 192  Q
    |||||| |||||||| |||||| ||||||||||||||||||    
T  18300886 ttcactctgtattgtcttcaaaaaccttctaagaaccattg 18300926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 14921817 - 14921977
Alignment:
Q  48 gcaggggcgcatgaggcaacacctcctgcacgaattctatagtttttgata-tttttcaaacactctttcgtcatgtgatgccttggaatttcaaatgaa 146  Q
    |||||||||||||||||| | |||||||| |||||| |  ||||||  |   |||||||| |  ||||  ||| ||||||||||||||| |||||||||     
T  14921817 gcaggggcgcatgaggcagcccctcctgcgcgaattatgcagttttcaaccctttttcaagcgttcttctgtcttgtgatgccttggaaattcaaatgat 14921916  T
Q  147 ttgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    || | ||||||||||||||| | || |||||||||||||||||||||| ||||||||||||    
T  14921917 ttttcttcactttgtattgtctacatataccttctaagaaccattgaacttcaatcttcat 14921977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 34063697 - 34063779
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||||| |||||||||||| | ||||||||||||||| |||||||  ||||||| ||||||  || || |||||||||    
T  34063697 atgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaatgtcttctaataaccatcaaaattaaatcttcat 34063779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 27417122 - 27417186
Alignment:
Q  128 ccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattg 192  Q
    |||||||| || ||||||||| | ||||||||||||||| |||||| ||||||| ||||||||||    
T  27417122 ccttggaacttgaaatgaattttcttcactttgtattgttttcaaaaaccttcttagaaccattg 27417186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 18818956 - 18818894
Alignment:
Q  129 cttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccatt 191  Q
    ||||||| || || |||||| | ||||||||||||||| |||||| |||||||||||||||||    
T  18818956 cttggaacttgaattgaattttcttcactttgtattgtcttcaaagaccttctaagaaccatt 18818894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 22525678 - 22525744
Alignment:
Q  127 gccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattga 193  Q
    |||||| || || |||| |||| | |||||||||| |||| ||||||||||||||||||||||||||    
T  22525678 gccttgaaacttgaaataaattttcttcactttgtgttgtcttcaaataccttctaagaaccattga 22525744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 17415035 - 17415101
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| | |||||||| | |||| |||||||| || ||||||||||||| ||||||||||||||    
T  17415035 aaatgaattttcttcactttttgttgtcttcaaataactcctaagaaccattg-atttcaatcttcat 17415101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 1732809 - 1732727
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    |||| |||||| || |||| |||| |||||| |||||||||  ||||||||  ||||||||| ||||||  ||||||||||||    
T  1732809 atgcgttggaacttgaaataaattttattcattttgtattgccttcaaatatattctaagaatcattgatcttcaatcttcat 1732727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 18236159 - 18236241
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||| ||| || ||||||||| | ||||  ||||||||| |||||  ||||||||||||||||||   ||||||||||||    
T  18236159 atgcctttgaacttgaaatgaattttcttcatcttgtattgtcttcaacaaccttctaagaaccattggccttcaatcttcat 18236241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 16593622 - 16593675
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattga 193  Q
    ||||||||| | ||||||||||||||| |||||  |||||||||||||| ||||    
T  16593622 aaatgaattttcttcactttgtattgtcttcaacaaccttctaagaacccttga 16593675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 19219071 - 19219149
Alignment:
Q  129 cttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||||||||  ||||||||||||    
T  19219071 cttggaatttgaaatgaattttattcactttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcat 19219149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 19542966 - 19543059
Alignment:
Q  111 tctttcgtcatgtgatgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatctt 204  Q
    ||||||||| ||  ||||||||||| || ||||||||| | ||||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  19542966 tctttcgtcttgcaatgccttggaacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagaactattgaaattcaatctt 19543059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 18474442 - 18474349
Alignment:
Q  111 tctttcgtcatgtgatgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatctt 204  Q
    ||||||||| ||  |||| |||||| || ||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||| |||||||||    
T  18474442 tctttcgtcttgcaatgcattggaacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaaattcaatctt 18474349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 10342017 - 10341966
Alignment:
Q  153 tcactttgtattgtattcaaataccttctaagaaccattgaatttcaatctt 204  Q
    |||||||||||||| |||||| ||||||||||||||| |||  |||||||||    
T  10342017 tcactttgtattgtcttcaaaaaccttctaagaaccactgatcttcaatctt 10341966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 11475078 - 11475039
Alignment:
Q  152 ttcactttgtattgtattcaaataccttctaagaaccatt 191  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  11475078 ttcactttgtattgtcttcaaatatcttctaagaaccatt 11475039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 28422683 - 28422629
Alignment:
Q  152 ttcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||||||||| ||||||||||||||||  | ||||||| ||||||||||||    
T  28422683 ttcactttgtattgtcttcaaataccttctaa-catcattgaacttcaatcttcat 28422629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 19285322 - 19285277
Alignment:
Q  159 tgtattgtattcaaataccttctaagaaccattgaatttcaatctt 204  Q
    |||||||| ||||||||||||| |||||||||||| | ||||||||    
T  19285322 tgtattgtcttcaaataccttccaagaaccattgattatcaatctt 19285277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 25883346 - 25883293
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattga 193  Q
    ||||||||| | ||||||||||||||| |||||  |||||||||||||| ||||    
T  25883346 aaatgaattttcttcactttgtattgtcttcaacaaccttctaagaacccttga 25883293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 207
Target Start/End: Complemental strand, 29437794 - 29437647
Alignment:
Q  51 ggggcgcatgaggcaacacctcctgcacgaattctatagtttttga-tatttttcaaacactctttcgtcatgtgatgccttggaatttcaaatgaattg 149  Q
    ||||||||||||||| | |||||||||| ||||||| |||||||||  ||||||||| |  ||||  ||| || |||||||||||| |||||||||| |     
T  29437794 ggggcgcatgaggcatcccctcctgcacaaattctacagtttttgaccatttttcaagcgttcttctgtcttgcgatgccttggaacttcaaatgaagtt 29437695  T
Q  150 tattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    | |||||||||||||||          |||||||||||||||||| ||||||||||||    
T  29437694 tcttcactttgtattgt----------cttctaagaaccattgaacttcaatcttcat 29437647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 31859757 - 31859839
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||||| || |||| |||| | ||||||||||||||| ||||||||||||||||||||||||||  |||||| |||||    
T  31859757 atgccttggaacttgaaataaattttcttcactttgtattgtcttcaaataccttctaagaaccattgatcttcaatattcat 31859839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 21077491 - 21077409
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||||| || ||||||||| |||||| |||||||||| ||| | ||||||||||||||||||||  ||||||| ||||    
T  21077491 atgccttggaacttgaaatgaattttattcaatttgtattgtcttcgattaccttctaagaaccattgatattcaatcctcat 21077409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 13064698 - 13064607
Alignment:
Q  111 tctttcgtcatgtgatgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatc 202  Q
    |||| |||| |||||||| |||||| || |||| || | | ||||||||| ||||| |||||||||| |||||||||||||||| |||||||    
T  13064698 tcttccgtcttgtgatgcattggaacttgaaatcaaatttgttcactttgaattgtcttcaaataccctctaagaaccattgaacttcaatc 13064607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 17187416 - 17187349
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| | || |||||||||||| |||||||| ||||||||||||| |||| ||||||||||||    
T  17187416 aaatgaattttctttactttgtattgtcttcaaataacttctaagaaccactgaacttcaatcttcat 17187349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 33519288 - 33519206
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    |||||||||||||| ||||||||| | ||||  ||||||||| |||||| ||||||||||||| |||||  ||||||| ||||    
T  33519288 atgccttggaatttgaaatgaattttcttcaacttgtattgtcttcaaagaccttctaagaacgattgatcttcaatcgtcat 33519206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 20985253 - 20985318
Alignment:
Q  129 cttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaa 194  Q
    |||| |||||||||||| || | ||||||||||||||| |||||||   |||||||||||||||||    
T  20985253 cttgaaatttcaaatgagttttcttcactttgtattgtcttcaaatgttttctaagaaccattgaa 20985318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 15192446 - 15192394
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattg 192  Q
    ||||||||||| ||||||||| ||||| |||||  ||||||||||||||||||    
T  15192446 aaatgaattgtcttcactttgaattgtcttcaacaaccttctaagaaccattg 15192394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 47024649 - 47024703
Alignment:
Q  152 ttcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||||| ||| |||||| |||||||||||||||||| | ||||||||||||    
T  47024649 ttcactttgtactgttttcaaaaaccttctaagaaccattg-acttcaatcttcat 47024703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 1695718 - 1695764
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaa 186  Q
    ||||||||| ||||||||||||||||| |||||  ||||||||||||    
T  1695718 aaatgaattttattcactttgtattgtcttcaacaaccttctaagaa 1695764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 5906627 - 5906685
Alignment:
Q  133 gaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccatt 191  Q
    |||||| ||||||||| | || |||||||||| | |||||| |||||||||||||||||    
T  5906627 gaatttgaaatgaattttcttaactttgtattatcttcaaaaaccttctaagaaccatt 5906685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 23353876 - 23353818
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaa 183  Q
    ||||||||||| || ||||||||| | ||||||||||||||| || ||| |||||||||    
T  23353876 atgccttggaacttgaaatgaattttcttcactttgtattgtcttaaaagaccttctaa 23353818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 18898225 - 18898176
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaacca 189  Q
    ||||||||| | || ||||||||||||||||||| ||||| |||||||||    
T  18898225 aaatgaattttctttactttgtattgtattcaaaaaccttttaagaacca 18898176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 34864167 - 34864220
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattga 193  Q
    ||||||||| | |||| |||||||||| | |||| |||||||||||||||||||    
T  34864167 aaatgaattttcttcattttgtattgtctacaaaaaccttctaagaaccattga 34864220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 228047 - 228110
Alignment:
Q  129 cttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattg 192  Q
    ||||||| || ||||||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  228047 cttggaacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagaaccattg 228110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 11437759 - 11437596
Alignment:
Q  45 tgtgcaggggcgcatgaggcaacacctcctgcacgaattctatagtttttgata-tttttcaaacactctttcgtcatgtgatgccttggaatttcaaat 143  Q
    ||||||||||| ||||||| ||| |||| ||  | |||||| ||||||| |||  ||||||||    |||| |||| ||  |||| |||||| |||||||    
T  11437759 tgtgcaggggcacatgaggtaacccctcttgtgcaaattctgtagttttcgatcctttttcaagtgttcttccgtcttgcaatgctttggaacttcaaat 11437660  T
Q  144 gaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||| | |||||| |||||||| |||||||  |||||||||||||||||| |||||| |||||    
T  11437659 gaattatcttcactctgtattgtcttcaaatgtcttctaagaaccattgaacttcaattttcat 11437596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 13583403 - 13583458
Alignment:
Q  152 ttcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||    
T  13583403 ttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcatcat 13583458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 29292023 - 29291946
Alignment:
Q  130 ttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| ||||||||| | |||||||| | |||| |||||| |||||||||||||||||||  |||||| |||||    
T  29292023 ttggaatttgaaatgaatttttttcactttctgttgtcttcaaagaccttctaagaaccattgatcttcaatattcat 29291946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 22894391 - 22894459
Alignment:
Q  128 ccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatt 196  Q
    |||||||| |||||| ||||| | ||||||||||||||| |||||| ||| ||||||||| ||||||||    
T  22894391 ccttggaacttcaaaagaattttcttcactttgtattgtcttcaaaaaccatctaagaacaattgaatt 22894459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 28902332 - 28902280
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattg 192  Q
    ||||||||| ||||||||||||||||| |||||  ||||||||||||||||||    
T  28902332 aaatgaattttattcactttgtattgtcttcaataaccttctaagaaccattg 28902280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 28901221 - 28901287
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| | ||||||||||||||| |||| | ||||| |||||||||||||| ||||||||||||    
T  28901221 aaatgaattttcttcactttgtattgtcttcagaaaccttataagaaccattgaa-ttcaatcttcat 28901287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 30544020 - 30543937
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttct-aagaaccattgaatttcaatcttcat 207  Q
    ||||||||||| || ||||||||| | |||||||| |||||| || ||||| ||| | ||||||||||||| ||||||||||||    
T  30544020 atgccttggaacttgaaatgaattttcttcactttatattgtctttaaatatcttttaaagaaccattgaacttcaatcttcat 30543937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 30850960 - 30851038
Alignment:
Q  129 cttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||| || |||| |||| | ||||||||||||| |||||||| || ||||||||||| ||||  ||||||||||||    
T  30850960 cttggaacttgaaattaattttcttcactttgtattatattcaaagacattctaagaaccgttgatcttcaatcttcat 30851038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 14424684 - 14424749
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttc 205  Q
    ||||||||| | ||||| ||| ||||| |||||| |||||||||||||||||||  ||||||||||    
T  14424684 aaatgaattttcttcacattgaattgtgttcaaaaaccttctaagaaccattgatcttcaatcttc 14424749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 28291984 - 28292039
Alignment:
Q  152 ttcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    |||| |||||||||| |||||| ||||||||||||||||| |  ||||||||||||    
T  28291984 ttcattttgtattgtcttcaaagaccttctaagaaccattaatcttcaatcttcat 28292039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 32239546 - 32239464
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    |||||||| || || ||||||||| | |||||||| |||||| || ||  ||||| ||| |||||||||| ||||||||||||    
T  32239546 atgccttgaaacttgaaatgaattttcttcactttttattgtctttaagaaccttataaaaaccattgaacttcaatcttcat 32239464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 11310139 - 11310180
Alignment:
Q  152 ttcactttgtattgtattcaaataccttctaagaaccattga 193  Q
    ||||||||||||||| |||||| |||||||||||| ||||||    
T  11310139 ttcactttgtattgttttcaaaaaccttctaagaatcattga 11310180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 12357737 - 12357688
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaat 174  Q
    |||||||||||||| ||||||||| | |||||||| ||||||||| ||||    
T  12357737 atgccttggaatttgaaatgaattttcttcactttttattgtattaaaat 12357688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 12358865 - 12358816
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaat 174  Q
    |||||||||||||| ||||||||| | |||||||| ||||||||| ||||    
T  12358865 atgccttggaatttgaaatgaattttcttcactttttattgtattaaaat 12358816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 18771263 - 18771230
Alignment:
Q  52 gggcgcatgaggcaacacctcctgcacgaattct 85  Q
    |||||||||||||||| |||||||||||||||||    
T  18771263 gggcgcatgaggcaacccctcctgcacgaattct 18771230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 16052148 - 16052200
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattg 192  Q
    ||||||||| | |||| |||||||||| |||||| |||||||||||| |||||    
T  16052148 aaatgaattttcttcattttgtattgtcttcaaaaaccttctaagaatcattg 16052200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 31436727 - 31436649
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||||| || |||| |||| | ||||||||||||||| |||||||||   ||||||||||||||   |||||||||||    
T  31436727 atgccttggaacttgaaat-aatttttttcactttgtattgtcttcaaatac---ctaagaaccattgatcgtcaatcttcat 31436649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 26499703 - 26499785
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    |||||||| || || ||||||||| | || |||||||||||| |||||| |||||||||||||||||||  ||||||||||||    
T  26499703 atgccttgaaacttgaaatgaattttctttactttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcat 26499785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 30355560 - 30355493
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| |||||||||| |||||| |||||| ||||||||||||| |||||  ||||||||||||    
T  30355560 aaatgaattttattcactttttattgtcttcaaaaaccttctaagaacgattgatcttcaatcttcat 30355493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 33638325 - 33638262
Alignment:
Q  144 gaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||| ||||||||||||||| | |||||| ||||| |||||||||||||  ||||||||||||    
T  33638325 gaattttattcactttgtattatcttcaaagaccttataagaaccattgatcttcaatcttcat 33638262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 33638381 - 33638443
Alignment:
Q  145 aattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    |||| ||||||||||||||| | |||||| ||||| |||||||||||||  ||||||||||||    
T  33638381 aattttattcactttgtattatcttcaaagaccttataagaaccattgatcttcaatcttcat 33638443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 17860320 - 17860372
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattg 192  Q
    ||||||||| | ||||||||||||||| | |||| ||||||||||||||||||    
T  17860320 aaatgaattttcttcactttgtattgtctacaaaaaccttctaagaaccattg 17860372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 12972241 - 12972323
Alignment:
Q  125 atgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    |||||||| || || ||||||||||| || | | | | ||||||| |||||||||| ||||||||||||  ||||||||||||    
T  12972241 atgccttgaaagtttaaatgaattgtctttaatgtctgttgtattaaaataccttcaaagaaccattgatcttcaatcttcat 12972323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 14768128 - 14768206
Alignment:
Q  121 tgtgatgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttca 199  Q
    |||||||||||| || || ||||  ||| | ||| |||| |||||| ||||||||||||||| |||| |||||||||||    
T  14768128 tgtgatgccttgtaacttaaaatctattttcttcgctttctattgtcttcaaataccttctatgaacgattgaatttca 14768206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 15575167 - 15575114
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattga 193  Q
    ||||||||| | ||||||||||||||| |||||  |||||||||||||| ||||    
T  15575167 aaatgaattttcttcactttgtattgtcttcaacgaccttctaagaacccttga 15575114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 11569 - 11635
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttca 206  Q
    ||||||||| | ||||||||||||||| |||||||||||| |||||| ||||||  |||||||||||    
T  11569 aaatgaattttcttcactttgtattgtcttcaaataccttataagaatcattgatattcaatcttca 11635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 22643747 - 22643825
Alignment:
Q  111 tctttcgtcatgtgatgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaacca 189  Q
    ||||||||| ||  || ||||||| ||| ||||||||| | |||| ||||||||||||||||||||||| |||||||||    
T  22643747 tctttcgtcttgcaataccttggagtttgaaatgaattttcttcagtttgtattgtattcaaataccttttaagaacca 22643825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 19763747 - 19763823
Alignment:
Q  130 ttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttca 206  Q
    |||||| || ||||||||| | ||||||||||||| | |||||| |||||||||||||| ||||  |||||||||||    
T  19763747 ttggaacttgaaatgaattttcttcactttgtattatcttcaaaaaccttctaagaacccttgatcttcaatcttca 19763823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 7742753 - 7742808
Alignment:
Q  152 ttcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||||||||| |||||| |||||||||||||||||||  |||| |||||||    
T  7742753 ttcactttgtattgtcttcaaagaccttctaagaaccattgatcttcagtcttcat 7742808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 19331756 - 19331686
Alignment:
Q  137 ttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| || | ||||| ||||||||| |||||||  ||||||| || ||||||||||||||||||||    
T  19331756 ttcaaatgacttatcttcacattgtattgtcttcaaatgtcttctaaaaatcattgaatttcaatcttcat 19331686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 23157663 - 23157739
Alignment:
Q  128 ccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatctt 204  Q
    |||||||| || ||||||| | | |||||||| | |||| || ||||||||| |||||||||||||| |||||||||    
T  23157663 ccttggaactttaaatgaactttcttcactttctgttgtctttaaataccttataagaaccattgaacttcaatctt 23157739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 18452683 - 18452750
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| | ||||||||||||||| || ||| ||||| |||||||||||||  |||||| |||||    
T  18452683 aaatgaattttcttcactttgtattgttttaaaaaaccttataagaaccattgatcttcaattttcat 18452750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 26329941 - 26330007
Alignment:
Q  140 aaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| | ||||||||||||||| || ||| |||||||||| ||||||| | ||||||||||||    
T  26329941 aaatgaattttcttcactttgtattgtcttaaaaaaccttctaaggaccattg-acttcaatcttcat 26330007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 11274219 - 11274268
Alignment:
Q  158 ttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| |||||| ||||||||||||||||||   ||||||||||||    
T  11274219 ttgtattgtcttcaaagaccttctaagaaccattggtcttcaatcttcat 11274268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 18872905 - 18872966
Alignment:
Q  122 gtgatgccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaa 183  Q
    |||||| ||||||| |||||||||||| | |||| |||||||||| ||||| |||| |||||    
T  18872905 gtgatgtcttggaacttcaaatgaattttcttcaatttgtattgtcttcaactaccgtctaa 18872966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 12339899 - 12339947
Alignment:
Q  153 tcactttgtattgtattcaaataccttctaagaaccattgaatttcaat 201  Q
    |||||||||||||| |||||  |||||||||||||| |||| |||||||    
T  12339899 tcactttgtattgtcttcaacgaccttctaagaacccttgattttcaat 12339947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 18178358 - 18178278
Alignment:
Q  127 gccttggaatttcaaatgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||| || | ||||||| |||||| |||||||| | |||||| |||||| |||||| ||||   ||||||||||||    
T  18178358 gccttggaacttgagatgaattttattcaatttgtattatcttcaaagaccttccaagaacaattggtcttcaatcttcat 18178278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 20694863 - 20694819
Alignment:
Q  160 gtattgtattcaaataccttctaagaaccattgaatttcaatctt 204  Q
    ||||||| |||||||||||||||||||||||| |  |||||||||    
T  20694863 gtattgtcttcaaataccttctaagaaccatttatcttcaatctt 20694819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 24130854 - 24130818
Alignment:
Q  157 tttgtattgtattcaaataccttctaagaaccattga 193  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  24130854 tttgtattgtattcaaaaaccttctaagatccattga 24130818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 5644 - 5707
Alignment:
Q  143 tgaattgtattcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    |||||| | ||||||||||||| | || ||| |||||||||||||||||||| ||||||||||||    
T  5644 tgaattttcttcactttgtattttctttaaagaccttctaagaaccattgaa-ttcaatcttcat 5707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 21626 - 21574
Alignment:
Q  155 actttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    |||||||||||| || ||| |||||||||||||||||||  ||||||||||||    
T  21626 actttgtattgtctttaaaaaccttctaagaaccattgatcttcaatcttcat 21574  T

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Target: scaffold0188 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 26838 - 26893
Alignment:
Q  152 ttcactttgtattgtattcaaataccttctaagaaccattgaatttcaatcttcat 207  Q
    ||||||||||||||| |||||  || ||||||||||||||||| |||||| |||||    
T  26838 ttcactttgtattgtcttcaagaactttctaagaaccattgaacttcaattttcat 26893  T

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