View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5424-Insertion-1 (Length: 1030)

Name: NF5424-Insertion-1
Description: NF5424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5424-Insertion-1
NF5424-Insertion-1
[»] chr8 (14 HSPs)
chr8 (282-963)||(30213702-30214386)
chr8 (81-288)||(30213173-30213384)
chr8 (462-670)||(20049552-20049768)
chr8 (705-871)||(27138030-27138197)
chr8 (479-613)||(29290946-29291080)
chr8 (461-613)||(27137795-27137948)
chr8 (704-872)||(10329742-10329909)
chr8 (6-49)||(30213092-30213135)
chr8 (304-412)||(14547660-14547767)
chr8 (615-670)||(13281250-13281305)
chr8 (513-609)||(18529791-18529887)
chr8 (350-412)||(23586728-23586788)
chr8 (343-412)||(12842634-12842703)
chr8 (338-415)||(27137689-27137766)
[»] chr2 (21 HSPs)
chr2 (462-872)||(19693118-19693552)
chr2 (461-818)||(13892158-13892523)
chr2 (461-818)||(14032283-14032648)
chr2 (615-872)||(24227858-24228119)
chr2 (619-872)||(42297658-42297915)
chr2 (615-809)||(12060652-12060848)
chr2 (481-613)||(25907966-25908097)
chr2 (720-863)||(25564058-25564200)
chr2 (763-872)||(28789540-28789649)
chr2 (712-860)||(33013601-33013748)
chr2 (353-398)||(18114251-18114296)
chr2 (740-825)||(25906063-25906148)
chr2 (353-409)||(16195759-16195815)
chr2 (351-412)||(27766152-27766211)
chr2 (351-412)||(33240171-33240233)
chr2 (351-412)||(33248092-33248154)
chr2 (350-398)||(8685015-8685061)
chr2 (514-558)||(9124029-9124074)
chr2 (516-613)||(12845712-12845809)
chr2 (350-398)||(17418219-17418265)
chr2 (359-412)||(27918990-27919043)
[»] chr1 (14 HSPs)
chr1 (500-798)||(25517164-25517476)
chr1 (462-613)||(18581952-18582102)
chr1 (467-590)||(10655991-10656113)
chr1 (480-613)||(26858617-26858748)
chr1 (712-860)||(10656256-10656405)
chr1 (791-872)||(1896524-1896605)
chr1 (740-872)||(26858379-26858511)
chr1 (301-398)||(26858807-26858904)
chr1 (579-617)||(10649892-10649930)
chr1 (480-533)||(1896179-1896232)
chr1 (351-384)||(12669823-12669856)
chr1 (280-328)||(12849206-12849255)
chr1 (520-549)||(21721490-21721519)
chr1 (347-384)||(43283288-43283325)
[»] chr7 (12 HSPs)
chr7 (461-670)||(21620666-21620885)
chr7 (507-872)||(17879927-17880306)
chr7 (461-551)||(26454141-26454231)
chr7 (624-816)||(22731264-22731460)
chr7 (712-872)||(21019708-21019867)
chr7 (462-572)||(21019477-21019587)
chr7 (581-617)||(21572681-21572717)
chr7 (741-866)||(8309410-8309536)
chr7 (787-872)||(19196970-19197055)
chr7 (520-613)||(8309652-8309744)
chr7 (351-396)||(15871754-15871800)
chr7 (322-379)||(5290766-5290823)
[»] chr4 (20 HSPs)
chr4 (647-872)||(8502178-8502407)
chr4 (704-861)||(8189878-8190035)
chr4 (480-613)||(14116392-14116524)
chr4 (461-613)||(11434522-11434675)
chr4 (304-415)||(8501838-8501948)
chr4 (468-613)||(8189683-8189826)
chr4 (704-872)||(43358080-43358248)
chr4 (480-613)||(11442045-11442178)
chr4 (480-613)||(11551517-11551650)
chr4 (615-872)||(4046582-4046843)
chr4 (480-602)||(13929426-13929547)
chr4 (740-860)||(14116672-14116792)
chr4 (704-872)||(13929144-13929310)
chr4 (301-413)||(17133318-17133429)
chr4 (349-412)||(19052736-19052797)
chr4 (312-396)||(43357692-43357775)
chr4 (351-412)||(15193192-15193254)
chr4 (520-660)||(17133521-17133671)
chr4 (332-398)||(13977934-13977998)
chr4 (352-413)||(14116288-14116349)
[»] scaffold0425 (1 HSPs)
scaffold0425 (461-613)||(2439-2591)
[»] scaffold0105 (2 HSPs)
scaffold0105 (704-861)||(16453-16610)
scaffold0105 (468-613)||(16258-16401)
[»] chr6 (8 HSPs)
chr6 (724-872)||(13744218-13744366)
chr6 (724-872)||(13749718-13749866)
chr6 (351-410)||(14757779-14757840)
chr6 (351-396)||(15478450-15478495)
chr6 (740-821)||(35036261-35036340)
chr6 (350-385)||(20395700-20395735)
chr6 (349-398)||(34659377-34659424)
chr6 (579-608)||(12870485-12870514)
[»] chr3 (11 HSPs)
chr3 (704-869)||(24097501-24097666)
chr3 (512-818)||(9829294-9829613)
chr3 (738-848)||(10686485-10686595)
chr3 (740-847)||(27685764-27685870)
chr3 (754-862)||(20648664-20648772)
chr3 (351-413)||(12412257-12412320)
chr3 (747-848)||(47597426-47597527)
chr3 (615-663)||(24097711-24097759)
chr3 (347-415)||(27685514-27685581)
chr3 (519-553)||(24112314-24112348)
chr3 (520-549)||(12759109-12759138)
[»] chr5 (7 HSPs)
chr5 (511-612)||(19761263-19761364)
chr5 (302-415)||(19761079-19761192)
chr5 (740-871)||(30897011-30897142)
chr5 (740-818)||(22185897-22185975)
chr5 (615-872)||(17246070-17246331)
chr5 (713-819)||(17241522-17241627)
chr5 (704-846)||(28623344-28623486)
[»] scaffold0194 (2 HSPs)
scaffold0194 (720-872)||(6774-6924)
scaffold0194 (479-558)||(7090-7171)
[»] scaffold0669 (1 HSPs)
scaffold0669 (797-872)||(4694-4769)
[»] scaffold0008 (2 HSPs)
scaffold0008 (353-415)||(9851-9913)
scaffold0008 (353-415)||(20244-20306)
[»] scaffold0042 (2 HSPs)
scaffold0042 (461-553)||(89535-89629)
scaffold0042 (615-670)||(89408-89463)


Alignment Details
Target: chr8 (Bit Score: 530; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 282 - 963
Target Start/End: Original strand, 30213702 - 30214386
Alignment:
Q  282 ttaaacacgaagagagaaggagaaagagacgacacaagcaaattatacatgttcctctcacaatttgagagtagtccagtccccttgtacttccaaggaa 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |    
T  30213702 ttaaacacgaagagagaaggagaaagagacgacacaagcaaattatacatgttcctctcacaattcgagagtagtccagtccccttgcacttccaaggga 30213801  T
Q  382 tttttcactataatcacgcaagactacaatttgcgcagattacaatttgctcaaacacacgttaaaaggcnnnnnnnnactcaaacacacaagtaagaga 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| |||    
T  30213802 tttttcactataatcacgcaagactacaatttgcgcagattacaatttgctcaaacacacgttaaaaggcttctttt-actcaaacacacaagtaaaaga 30213900  T
Q  482 cttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagtact 581  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30213901 cttctacattcagagttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagtact 30214000  T
Q  582 taagaaattttaagattgaaagtttgtaagaactttgtgcgctatataattcgacagagtaagagcacttgtaaaatgatagaag---tcttctttttct 678  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  30214001 taagaaattttaagattgaaagtttgtaagaactttgtgcgctatataattcgacagagtaagagcacttgtaaaatgatagaagtcttcttctttttct 30214100  T
Q  679 tcaactacccagggtccttatatat--gagaatgagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgt 776  Q
    |||||||| ||  ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||    
T  30214101 tcaactactca-tgtccttatatatgagagaatgagagagccattgttgaagaagggtcagcacatcaaattagtccttgagaagcttgatcagagacgt 30214199  T
Q  777 taaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctctttatccttgaaagtt 876  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||| ||||||||||||||||||||||    
T  30214200 taaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaaatcttttgtttttaatagaatgatctgttacattctctttatccttgaaagtt 30214299  T
Q  877 ttggttggactaggtctttgttatttttattctcttgtatcgaaagaagttttttatgtggaaaatcaagctgatat-tatatatata 963  Q
    |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| || |||||| ||||||||||    
T  30214300 ttggttggaccaggtc-ttgtgatttttattctcttgtatcgaaagaagttttttatgttgaaaatcgaggtgatatatatatatata 30214386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 81 - 288
Target Start/End: Original strand, 30213173 - 30213384
Alignment:
Q  81 cacatcaaagttaatgcttttaagggtgaactagaatatgttttgtacgggttgtctacaactctacaatat-----tgcnnnnnnnnggattgtgatgg 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||        ||||||||||||    
T  30213173 cacatcaaagttaatgcttttaagggtgaactagaatatgttttgtacgggttgtctacaactctacaatataatattgcttttttt-ggattgtgatgg 30213271  T
Q  176 ctaaattgaaatcgtgtattgttaatctcttggaagaaaagcatgttcttaatattttggtgatacaactcttattgagaaattattttgataaatagta 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30213272 ctaaattgaaatcgtgtattgttaatctcttggaagaaaagcatgttcttaatattttggtgatacaactcttattgagaaattattttgataaatagta 30213371  T
Q  276 tgttatttaaaca 288  Q
    | |||||| ||||    
T  30213372 ttttatttgaaca 30213384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 462 - 670
Target Start/End: Complemental strand, 20049768 - 20049552
Alignment:
Q  462 tcaaacacacaagtaagagacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagt 561  Q
    |||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||   |||||||| ||||||||||||||  ||||||    
T  20049768 tcaaacgcacaagtaagagacttctacaatcagagtttaacaaataaataagattatgtttacact---tatacaatcagaggtgtaagaaagctaaagt 20049672  T
Q  562 tcatatgacttttgagtacttaagaaattttaagattgaaagtttgtaagaa-----------ctttgtgcgctatataattcgacagagtaagagcact 650  Q
     ||  ||||||   | ||||||||||||| || ||||||||| |||||||||            |||||||||||||||| | || || ||||| |||||    
T  20049671 gcaagtgacttcataatacttaagaaattctatgattgaaagcttgtaagaatttctctaagtgtttgtgcgctatataacttgatagggtaagggcact 20049572  T
Q  651 tgtaaaatgatagaagtctt 670  Q
    ||||||||||||||||||||    
T  20049571 tgtaaaatgatagaagtctt 20049552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 705 - 871
Target Start/End: Original strand, 27138030 - 27138197
Alignment:
Q  705 agaatgagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtc 804  Q
    |||||||||||||  |||| ||||||| |||  |||||||| | |||| ||||||||||| |||||||||||| | ||||| ||||||||||||||||||    
T  27138030 agaatgagagagcagttgtagaagaagtgtcgacacatcaattaagtccttgagaagcttgatcaaagacgttgagatgttgcctcaaatggataatgtc 27138129  T
Q  805 gttgagtagtcattcgaaaa-tcttttgttcctaatagaatgatttgttagattctctttatccttga 871  Q
    ||||||||||||||| |||| ||  || ||  |||||||||||| ||||| ||||||||| |||||||    
T  27138130 gttgagtagtcattcaaaaaatcccttttttttaatagaatgatctgttacattctctttgtccttga 27138197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 479 - 613
Target Start/End: Complemental strand, 29291080 - 29290946
Alignment:
Q  479 agacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagt 578  Q
    |||||| ||||||||| ||| || ||||||||||||||||||||||| |||| ||||||| |||| |||| ||| ||||||||||| |||| || | | |    
T  29291080 agacttttacaatcagagtttaagaaataaataagattgtgtttacagttgacatacaatcagagctgtaggaagattaaagttcaaatgatttctaaat 29290981  T
Q  579 acttaagaaattttaagattgaaagtttgtaagaa 613  Q
    ||||||||||| |||||||||||||||||||||||    
T  29290980 acttaagaaatgttaagattgaaagtttgtaagaa 29290946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 461 - 613
Target Start/End: Original strand, 27137795 - 27137948
Alignment:
Q  461 ctcaaacacacaagtaagagacttctacaatcagtgttaaa-caaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaa 559  Q
    ||||||||||||| || ||||||||||||||   |||| || ||||||||  ||||||| |||||| |||||||||||  | |||||||||||| |||||    
T  27137795 ctcaaacacacaactatgagacttctacaatttatgtttaatcaaataaaagagattgtttttacatttgatatacaaccaaaggtgtaagaaagttaaa 27137894  T
Q  560 gttcatatgacttttgagtacttaagaaattttaagattgaaagtttgtaagaa 613  Q
    ||  | ||||||| | | ||||||||||||| |||||||||||| |||||||||    
T  27137895 gtgaaaatgacttctaaatacttaagaaattctaagattgaaagcttgtaagaa 27137948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 704 - 872
Target Start/End: Complemental strand, 10329909 - 10329742
Alignment:
Q  704 gagaatgagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgt 803  Q
    ||||||||||||||| |||||||||| | ||||||||||||| | |||| |||||||| |  |||| ||||||| |||  || ||||  |||||||||||    
T  10329909 gagaatgagagagccgttgttgaagaggtgtcagcacatcaattaagtccttgagaag-tagatcagagacgttgaaactttgcctcttatggataatgt 10329811  T
Q  804 cgttgagtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
    |||||| || | ||| ||||||  |||| | ||||||||||||| | ||| ||||||||| ||||||||    
T  10329810 cgttgaataattatttgaaaattctttgcttctaatagaatgatatattacattctctttgtccttgaa 10329742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 30213092 - 30213135
Alignment:
Q  6 catattggtcttctattaagcaaaatatatttttgggattttcc 49  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  30213092 catattggtcttctattaagcaaaatatatttttgggattttcc 30213135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 14547660 - 14547767
Alignment:
Q  304 aaagagacgacacaagcaaattatacatgttcctctcacaatttgagagtagtccagtccccttgtacttccaaggaatttttcactataatcacgcaag 403  Q
    |||||||||| ||||||||||||||   ||||||||||||| |||||||||||| || || |||  |||| ||||  |||||| ||||||||||| ||||    
T  14547660 aaagagacgaaacaagcaaattatattggttcctctcacaaattgagagtagtcaagccctcttacactttcaagagattttt-actataatcacacaag 14547758  T
Q  404 actacaatt 412  Q
    | |||||||    
T  14547759 attacaatt 14547767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 615 - 670
Target Start/End: Original strand, 13281250 - 13281305
Alignment:
Q  615 tttgtgcgctatataattcgacagagtaagagcacttgtaaaatgatagaagtctt 670  Q
    |||||||||||||||||| |||| |||||| | |||||||||||||||||||||||    
T  13281250 tttgtgcgctatataatttgacaaagtaagggaacttgtaaaatgatagaagtctt 13281305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 513 - 609
Target Start/End: Original strand, 18529791 - 18529887
Alignment:
Q  513 gattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagtacttaagaaattttaagattgaaagtttgta 609  Q
    |||||||||||||||||||||||| ||||||||||||  || ||||||  || ||||||| | |  |||| ||| ||| ||||||| ||||||||||    
T  18529791 gattgtgtttacacttgatatacagttagaggtgtaactaacttaaagaacaaatgacttctaaacacttgagatattctaagatttaaagtttgta 18529887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 412
Target Start/End: Complemental strand, 23586788 - 23586728
Alignment:
Q  350 gagtagtccagtccccttgtacttccaaggaatttttcactataatcacgcaagactacaatt 412  Q
    ||||||| ||||||||||| |||||||||||  |||||||||||||||| | ||| |||||||    
T  23586788 gagtagttcagtccccttgcacttccaagga--ttttcactataatcacactagattacaatt 23586728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 343 - 412
Target Start/End: Original strand, 12842634 - 12842703
Alignment:
Q  343 aatttgagagtagtccagtccccttgtacttccaaggaatttttcactataatcacgcaagactacaatt 412  Q
    ||||||||  |||||||||||||||  ||||||||   |||||| ||||||||||| ||||| |||||||    
T  12842634 aatttgaggttagtccagtccccttacacttccaaaatattttttactataatcacacaagattacaatt 12842703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 27137689 - 27137766
Alignment:
Q  338 ctcacaatttgagagtagtccagtccccttgtacttccaaggaatttttcactataatcacgcaagactacaatttgc 415  Q
    |||||||||||||  |||| |||||||||   |||| ||||  ||||||||||||| |||| ||||| ||||||||||    
T  27137689 ctcacaatttgaggttagttcagtcccctgcaactttcaagagatttttcactatagtcacacaagattacaatttgc 27137766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 3e-54; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 462 - 872
Target Start/End: Complemental strand, 19693552 - 19693118
Alignment:
Q  462 tcaaacacacaagtaagagacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagt 561  Q
    |||||||||||||||| ||||||||||||| || ||| ||||| |||||||||||||||||||| |||||||||||| |||||||||| ||| |||||||    
T  19693552 tcaaacacacaagtaacagacttctacaattagagtttaacaattaaataagattgtgtttacatttgatatacaatcagaggtgtaaaaaacttaaagt 19693453  T
Q  562 tcatatgacttttgagtacttaagaaattttaagattgaaagtttgtaagaa-----------ctttgtgcgctatataattcgacagagtaagagcact 650  Q
     ||  ||||||   | || |||||||||| ||||||||||||||||||  ||            ||||||| |||||||||| || |||||||| |||||    
T  19693452 gcaagtgacttcatattaattaagaaattctaagattgaaagtttgtacaaatttctctaagtatttgtgctctatataatttgatagagtaagggcact 19693353  T
Q  651 tgtaaaatgataga-----agtcttctttttcttcaactacccagggtccttatata--tgagaatgagagagccattgttgaagaagggtcagcacatc 743  Q
    ||||||||||||||     ||| || |||||||| ||||||  | ||||||||||||   |||||| ||||||  ||||||||||||| |||||  ||||    
T  19693352 tgtaaaatgatagaaacctagttttttttttcttaaactactta-ggtccttatataggagagaataagagagttattgttgaagaagtgtcagtgcatc 19693254  T
Q  744 aaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtc-------gttgagtagtcattcgaaaatcttttgttcct 836  Q
    || |||||||||| ||||||| |||| |||| || | ||||| ||||||||||||||||||       |||||||||||||| |||| || |||  | ||    
T  19693253 aatttagtcattgtgaagcttgatcagagacattgagatgttccctcaaatggataatgtcattgattgttgagtagtcatttgaaattccttttcttct 19693154  T
Q  837 aatagaatgatttgttagattctctttatccttgaa 872  Q
     |||||| ||| ||||| ||||||||| ||||||||    
T  19693153 catagaaagatctgttacattctctttgtccttgaa 19693118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 461 - 818
Target Start/End: Original strand, 13892158 - 13892523
Alignment:
Q  461 ctcaaacacacaagtaagagacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaag 560  Q
    ||||||||||||| ||||| ||||||||||| ||  || ||||||||||| ||| ||  |||||||||||||||||||||||||||||||||| ||||||    
T  13892158 ctcaaacacacaaataagaaacttctacaattagaatttaacaaataaatgagaatgcttttacacttgatatacaattagaggtgtaagaaacttaaag 13892257  T
Q  561 ttcatatgacttttgagtacttaagaaattttaagattgaaagtttgtaagaactt---------tgtgcgctatataattcgacagagtaagagcactt 651  Q
    |     |||| ||||| ||||||||||||| ||| || ||||||||||||||| ||         ||||||||||  |||||||||||| |||  || ||    
T  13892258 t--gagtgac-tttgaatacttaagaaattctaatatcgaaagtttgtaagaatttctaagtgtatgtgcgctattaaattcgacagagaaaggacattt 13892354  T
Q  652 gtaaaatgatagaagtcttct--ttttcttcaactacccagggtccttatata--tgagaatgagagagccattgttgaagaagggtcagcacatcaaat 747  Q
    |||||||||||  |||||| |  |||| ||||||| |  | | | ||||||||   ||||||||||||||  ||||||||||||  || || ||| ||||    
T  13892355 gtaaaatgataacagtcttgttatttttttcaactgcata-gattcttatatacgagagaatgagagagctgttgttgaagaagtctctgcgcatgaaat 13892453  T
Q  748 tagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcatt 818  Q
     |||| ||||||| |||||||||||||||| ||||||| |||    |||||||||| ||| ||||||||||    
T  13892454 aagtccttgagaaacttaatcaaagacgttgaaatgttgcct-ttttggataatgttgttaagtagtcatt 13892523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 461 - 818
Target Start/End: Original strand, 14032283 - 14032648
Alignment:
Q  461 ctcaaacacacaagtaagagacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaag 560  Q
    ||||||||||||| ||||| ||||||||||| ||  || ||||||||||| ||| ||  |||||||||||||||||||||||||||||||||| ||||||    
T  14032283 ctcaaacacacaaataagaaacttctacaattagaatttaacaaataaatgagaatgcttttacacttgatatacaattagaggtgtaagaaacttaaag 14032382  T
Q  561 ttcatatgacttttgagtacttaagaaattttaagattgaaagtttgtaagaactt---------tgtgcgctatataattcgacagagtaagagcactt 651  Q
    |     |||| ||||| ||||||||||||| ||| || ||||||||||||||| ||         ||||||||||  |||||||||||| |||  || ||    
T  14032383 t--gagtgac-tttgaatacttaagaaattctaatatcgaaagtttgtaagaatttctaagtgtatgtgcgctattaaattcgacagagaaaggacattt 14032479  T
Q  652 gtaaaatgatagaagtcttct--ttttcttcaactacccagggtccttatata--tgagaatgagagagccattgttgaagaagggtcagcacatcaaat 747  Q
    |||||||||||  |||||| |  |||| ||||||| |  | | | ||||||||   ||||||||||||||  ||||||||||||  || || ||| ||||    
T  14032480 gtaaaatgataacagtcttgttatttttttcaactgcata-gattcttatatacgagagaatgagagagctgttgttgaagaagtctctgcgcatgaaat 14032578  T
Q  748 tagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcatt 818  Q
     |||| ||||||| |||||||||||||||| ||||||| |||    |||||||||| ||| ||||||||||    
T  14032579 aagtccttgagaaacttaatcaaagacgttgaaatgttgcct-ttttggataatgttgttaagtagtcatt 14032648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 615 - 872
Target Start/End: Complemental strand, 24228119 - 24227858
Alignment:
Q  615 tttgtgcgctatataattcgacagagtaagagcacttgtaaaatgatagaagtc---ttctttttcttcaactacccagggtccttatat--atgagaat 709  Q
    ||||||||||||||||   |||||||||| || |||| ||||||||||||||||   || ||||||| ||||| | || |||||||||||    ||||||    
T  24228119 tttgtgcgctatataagatgacagagtaaaagaacttttaaaatgatagaagtcttattatttttctccaactgctca-ggtccttatattggagagaat 24228021  T
Q  710 gagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttga 809  Q
    ||||||||  |||||||||||    || | ||||||||||||| || | ||| ||||||| |||| || | ||||| |||||||||||||||||||||||    
T  24228020 gagagagctgttgttgaagaatttccaacgcatcaaattagtccttaaaaagattaatcagagacattgagatgttacctcaaatggataatgtcgttga 24227921  T
Q  810 gtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
    |||||||||||||| |  |||| | |||| | ||| || ||||| ||||||||||||||||||    
T  24227920 gtagtcattcgaaatttctttgcttctaacataataatatgttacattctctttatccttgaa 24227858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 619 - 872
Target Start/End: Complemental strand, 42297915 - 42297658
Alignment:
Q  619 tgcgctatataattcgacagagtaagagcacttgtaaaatgatagaagtcttctt---tttcttcaactacccagggtccttatatatgagaa--tgaga 713  Q
    ||||||||||| || |||| |||||| ||||| ||||||| | ||||||||| ||   ||||||||||| | |||| |||||||||| || ||  |  ||    
T  42297915 tgcgctatatattttgacaaagtaagggcactagtaaaattacagaagtcttgttgtttttcttcaactgctcagg-tccttatataggataaaatctga 42297817  T
Q  714 gagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtag 813  Q
    |||||  ||||||| ||  |||||  |||||||| | || |||||||| ||||||| ||||||| ||   ||||||||||||||||||||||||||||||    
T  42297816 gagccggtgttgaataaatgtcagtgcatcaaatcattccttgagaagtttaatcagagacgttgaatcttttcctcaaatggataatgtcgttgagtag 42297717  T
Q  814 tcattcgaaaatcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
    ||||| |||  || |||  | ||||||||||||||| ||| ||| ||||| ||||||||    
T  42297716 tcatttgaagttcattttcttctaatagaatgatttcttatattatctttgtccttgaa 42297658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 615 - 809
Target Start/End: Original strand, 12060652 - 12060848
Alignment:
Q  615 tttgtgcgctatataattcgacagagtaagagcacttgtaaaatgatagaagtcttctt---tttcttcaactacccagggtccttatatatgagaa--t 709  Q
    ||||||| |||||||||| |||| ||||||  ||| |||||||||| ||||||||| ||   |||||| |||||| |||| |||||||||| | |||  |    
T  12060652 tttgtgcactatataatttgacaaagtaaggacacgtgtaaaatgacagaagtcttattatttttcttaaactactcagg-tccttatataggggaaatt 12060750  T
Q  710 gagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttga 809  Q
     | ||||||||||||||||  | ||||||||||||||  ||||   ||||||||| | || | |||||||||| ||||||||||||| ||||| ||||||    
T  12060751 caaagagccattgttgaagt-gtgtcagcacatcaaag-agtccacgagaagcttgaccagaaacgttaaaatatttcctcaaatggttaatgccgttga 12060848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 481 - 613
Target Start/End: Complemental strand, 25908097 - 25907966
Alignment:
Q  481 acttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagtac 580  Q
    |||||||||||||| ||| | ||| |||| |||||||||||||||||||||||| ||| ||||||||||| || |||| ||  |  ||||||   |  ||    
T  25908097 acttctacaatcagagttcatcaagtaaa-aagattgtgtttacacttgatatagaataagaggtgtaagtaacttaatgtgtaagtgacttccaaacac 25907999  T
Q  581 ttaagaaattttaagattgaaagtttgtaagaa 613  Q
    |||||||||| ||||||| ||||||| ||||||    
T  25907998 ttaagaaattctaagattaaaagtttttaagaa 25907966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 720 - 863
Target Start/End: Complemental strand, 25564200 - 25564058
Alignment:
Q  720 ttgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattc 819  Q
    |||||||||| | |||||| |||||||| |||||||   |||||| || | |||  || | ||||| || ||||||| ||||||||||||||||||||||    
T  25564200 ttgttgaaga-gtgtcagcgcatcaaatgagtcattcgtaagcttgattagagattttcagatgttgccccaaatggttaatgtcgttgagtagtcattc 25564102  T
Q  820 gaaaatcttttgttcctaatagaatgatttgttagattctcttt 863  Q
    |||| || |||  | | ||||||||||||||||  |||||||||    
T  25564101 gaaattcattttcttcaaatagaatgatttgttgcattctcttt 25564058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 763 - 872
Target Start/End: Complemental strand, 28789649 - 28789540
Alignment:
Q  763 ttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctctt 862  Q
    ||||||||||||||| |||  |||  | ||||||||||||||||||| ||| ||||  ||| ||||||| | ||||||||||||| | ||| ||||||||    
T  28789649 ttaatcaaagacgttgaaactttttatgaaatggataatgtcgttgaatagacatttaaaattcttttgcttctaatagaatgatctattacattctctt 28789550  T
Q  863 tatccttgaa 872  Q
    | || |||||    
T  28789549 tgtctttgaa 28789540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 712 - 860
Target Start/End: Complemental strand, 33013748 - 33013601
Alignment:
Q  712 gagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagt 811  Q
    ||||| ||||| ||||||| | ||||| ||| |||| |||  ||||||||||| |||| ||||||| | ||||| |||||| ||| | ||||  ||||||    
T  33013748 gagagtcattgctgaagaatg-tcagcgcataaaatgagttcttgagaagcttgatcagagacgttgagatgttgcctcaattggtttatgttattgagt 33013650  T
Q  812 agtcattcgaaaatcttttgttcctaatagaatgatttgttagattctc 860  Q
    ||||||| |||| || |||| |  |||||||||||| ||||| ||||||    
T  33013649 agtcattagaaattcctttgattataatagaatgatctgttacattctc 33013601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 18114251 - 18114296
Alignment:
Q  353 tagtccagtccccttgtacttccaaggaatttttcactataatcac 398  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||||    
T  18114251 tagtccagtccccttatacttccaagatatttttcactataatcac 18114296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 740 - 825
Target Start/End: Complemental strand, 25906148 - 25906063
Alignment:
Q  740 catcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaaat 825  Q
    ||||||||| ||| ||||||||||| |||| || ||||   | ||| ||||||||||||||||||| ||| |||||||| ||||||    
T  25906148 catcaaattcgtctttgagaagcttgatcagagtcgttgtcaagttgcctcaaatggataatgtcgctgaatagtcatttgaaaat 25906063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 353 - 409
Target Start/End: Complemental strand, 16195815 - 16195759
Alignment:
Q  353 tagtccagtccccttgtacttccaaggaatttttcactataatcacgcaagactaca 409  Q
    |||||||| ||| ||||||||| |||| |||||||||||||||||| ||||| ||||    
T  16195815 tagtccagaccctttgtacttctaagggatttttcactataatcacacaagattaca 16195759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 27766211 - 27766152
Alignment:
Q  351 agtagtccagtccccttgtacttccaaggaatttttcactataatcacgcaagactacaatt 412  Q
    |||||||||||||||||  ||||||||||||  ||||||||||||||| | ||| |||||||    
T  27766211 agtagtccagtccccttacacttccaaggaa--tttcactataatcacactagattacaatt 27766152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 33240171 - 33240233
Alignment:
Q  351 agtagtccagtccccttgt-acttccaaggaatttttcactataatcacgcaagactacaatt 412  Q
    |||||| |||||||||||| |||| ||||  |||||||||||||||||| ||||| |||||||    
T  33240171 agtagttcagtccccttgtcacttacaagagatttttcactataatcacacaagattacaatt 33240233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 33248092 - 33248154
Alignment:
Q  351 agtagtccagtccccttgt-acttccaaggaatttttcactataatcacgcaagactacaatt 412  Q
    |||||| |||||||||||| |||| ||||  |||||||||||||||||| ||||| |||||||    
T  33248092 agtagttcagtccccttgtcacttacaagagatttttcactataatcacacaagattacaatt 33248154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 8685015 - 8685061
Alignment:
Q  350 gagtagtccagtccccttgtacttccaaggaatttttcactataatcac 398  Q
    ||||||||||||||||||| |||||||||| |  |||||||||||||||    
T  8685015 gagtagtccagtccccttgcacttccaaggga--tttcactataatcac 8685061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 514 - 558
Target Start/End: Original strand, 9124029 - 9124074
Alignment:
Q  514 attgtgttt-acacttgatatacaattagaggtgtaagaaaattaa 558  Q
    ||||||||| |||||||||||||||| ||||||||||||| |||||    
T  9124029 attgtgtttcacacttgatatacaatcagaggtgtaagaagattaa 9124074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 516 - 613
Target Start/End: Complemental strand, 12845809 - 12845712
Alignment:
Q  516 tgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagtacttaagaaattttaagattgaaagtttgtaagaa 613  Q
    |||||||||| |||||||||||| | ||||||||  |  || |||| ||  |||||| |||  |||||||||||| |||||||||||  |||||||||    
T  12845809 tgtgtttacagttgatatacaatcaaaggtgtaaacatgttcaagtgcaagtgacttatgaacacttaagaaattctaagattgaaaacttgtaagaa 12845712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 17418265 - 17418219
Alignment:
Q  350 gagtagtccagtccccttgtacttccaaggaatttttcactataatcac 398  Q
    |||||||||||||||||||  |||||||||||  |||||||||||||||    
T  17418265 gagtagtccagtccccttgcgcttccaaggaa--tttcactataatcac 17418219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 27919043 - 27918990
Alignment:
Q  359 agtccccttgtacttccaaggaatttttcactataatcacgcaagactacaatt 412  Q
    |||||||||| | ||| ||||||||||||| ||||||||| ||||| |||||||    
T  27919043 agtccccttgcagttctaaggaatttttcattataatcacacaagattacaatt 27918990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 6e-40; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 500 - 798
Target Start/End: Original strand, 25517164 - 25517476
Alignment:
Q  500 aacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagtacttaagaaattttaagat-t 598  Q
    ||||||||||||||||||| |||||| |||||||||||| ||| ||||||| ||||| ||||||||||||||| | | ||||||||||||| |||||| |    
T  25517164 aacaaataaataagattgtctttacagttgatatacaatcagatgtgtaag-aaatttaagttcatatgacttct-aatacttaagaaattctaagatat 25517261  T
Q  599 gaaagtttgtaaga-----------actttgtgcgctatataattcgacagagtaagagcacttgtaaaatgatagaagtcttctt---tttcttcaact 684  Q
    ||||||||||||||           | |||||||| ||||| ||||||||||||||   |||||||||||||||||||||||| ||   |||||||||||    
T  25517262 gaaagtttgtaagaatttctctaagagtttgtgcgttatattattcgacagagtaaagacacttgtaaaatgatagaagtcttgttatatttcttcaact 25517361  T
Q  685 acccagggtccttatat--atgagaatgagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaat 782  Q
     | || ||||  |||||  | ||||| ||||||||| || ||||||| | | || ||||||||||||||| |||||| |||| |||| ||||||| | ||    
T  25517362 gctca-ggtctatatatagaagagaacgagagagccgttattgaagaggtgccaacacatcaaattagtccttgagatgcttgatcagagacgtttagat 25517460  T
Q  783 gtttcctcaaatggat 798  Q
    ||| ||||||||||||    
T  25517461 gttgcctcaaatggat 25517476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 462 - 613
Target Start/End: Complemental strand, 18582102 - 18581952
Alignment:
Q  462 tcaaacacacaagtaagagacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagt 561  Q
    |||| |||||||| ||||||||||||||| ||  |||  |||||||||||||||||| |||||| |||||||||||||||| |||| || ||||| ||||    
T  18582102 tcaatcacacaagaaagagacttctacaaacaaagttttacaaataaataagattgtttttacaattgatatacaattagacgtgt-aggaaatttaagt 18582004  T
Q  562 tcatatgacttttgagtacttaagaaattttaag-attgaaagtttgtaagaa 613  Q
    ||||||||||| |||| |||||||||||| |||| | | ||||||||||||||    
T  18582003 tcatatgacttctgag-acttaagaaattctaagaaataaaagtttgtaagaa 18581952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 467 - 590
Target Start/End: Original strand, 10655991 - 10656113
Alignment:
Q  467 cacacaagtaagagacttctacaatcagtgttaaacaaataaataagattgtg-tttacacttgatatacaattagaggtgtaagaaaattaaagttcat 565  Q
    ||||| || ||||||||||| ||||||| ||| |||||||||| ||||||||| |||||||||||||||||||  |||||||||| ||||| ||| | ||    
T  10655991 cacacgagaaagagacttctgcaatcagagtttaacaaataaacaagattgtgttttacacttgatatacaatctgaggtgtaag-aaatttaagcttat 10656089  T
Q  566 atgacttttgagtacttaagaaatt 590  Q
    ||||||| ||| |||||||||||||    
T  10656090 atgacttctga-tacttaagaaatt 10656113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 480 - 613
Target Start/End: Complemental strand, 26858748 - 26858617
Alignment:
Q  480 gacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagta 579  Q
    ||||||||||||||| ||| | ||||||||  ||||||| ||||||||||||||||||||||| || |||  || ||||||| ||  |||||| | |  |    
T  26858748 gacttctacaatcagagtttatcaaataaa--agattgtttttacacttgatatacaattagaagtataattaacttaaagtgcaagtgacttctaaaca 26858651  T
Q  580 cttaagaaattttaagattgaaagtttgtaagaa 613  Q
    ||||||||||| ||||||| ||||||||||||||    
T  26858650 cttaagaaattctaagattaaaagtttgtaagaa 26858617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 712 - 860
Target Start/End: Original strand, 10656256 - 10656405
Alignment:
Q  712 gagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataat--gtcgttga 809  Q
    ||||| |||||||||||| | |||||  |||||||| |||| |||||| |||| |||||||||||| |||||||  || |||||||||||  ||||||||    
T  10656256 gagagtcattgttgaaga-gtgtcagtgcatcaaatgagtccttgagatgcttgatcaaagacgttgaaatgttgtcttaaatggataattcgtcgttga 10656354  T
Q  810 gtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctc 860  Q
     |||| |||||||| || |||| | |||||||||| || ||||| ||||||    
T  10656355 atagttattcgaaattcatttgcttctaatagaataatctgttacattctc 10656405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 791 - 872
Target Start/End: Original strand, 1896524 - 1896605
Alignment:
Q  791 aaatggataatgtcgttgagtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
    ||||||||||||||| ||| ||| ||||| || ||| |||||| ||||||||||||||||||| ||||||||| ||||||||    
T  1896524 aaatggataatgtcgatgaatagccattcaaagatcatttgtttctaatagaatgatttgttacattctctttgtccttgaa 1896605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 740 - 872
Target Start/End: Complemental strand, 26858511 - 26858379
Alignment:
Q  740 catcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaaatcttttgttcctaat 839  Q
    ||||||||| |||||||||||||||||| | || ||||||||  || | ||  ||| ||||||| ||||| ||||||| |||||||||| || | |||||    
T  26858511 catcaaattcgtcattgagaagcttaattagagtcgttaaaactttgcttcttatgaataatgttgttgaatagtcatccgaaaatcttatgcttctaat 26858412  T
Q  840 agaatgatttgttagattctctttatccttgaa 872  Q
    | ||||||| |||| ||| ||||| ||||||||    
T  26858411 ataatgattcgttacattttctttgtccttgaa 26858379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 301 - 398
Target Start/End: Complemental strand, 26858904 - 26858807
Alignment:
Q  301 gagaaagagacgacacaagcaaattatacatgttcctctcacaatttgagagtagtccagtccccttgtacttccaaggaatttttcactataatcac 398  Q
    ||||||||||||||| |||||||||||    ||||| |||||||||  ||  |||| ||||||||||| ||||||||   ||||||||||||||||||    
T  26858904 gagaaagagacgacataagcaaattatcttggttcccctcacaattcaaggttagttcagtccccttgcacttccaaaagatttttcactataatcac 26858807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 579 - 617
Target Start/End: Complemental strand, 10649930 - 10649892
Alignment:
Q  579 acttaagaaattttaagattgaaagtttgtaagaacttt 617  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  10649930 acttaagaaattctaagattgaaagtttgtaaggacttt 10649892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 480 - 533
Target Start/End: Original strand, 1896179 - 1896232
Alignment:
Q  480 gacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatat 533  Q
    ||||| |||||||||  || ||||||||||  ||||||||||||||||||||||    
T  1896179 gacttttacaatcagattttaacaaataaaagagattgtgtttacacttgatat 1896232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 12669856 - 12669823
Alignment:
Q  351 agtagtccagtccccttgtacttccaaggaattt 384  Q
    |||||||||||||||||| |||||||||||||||    
T  12669856 agtagtccagtccccttgcacttccaaggaattt 12669823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 12849206 - 12849255
Alignment:
Q  280 atttaaacacgaagagagaag-gagaaagagacgacacaagcaaattata 328  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||| ||||    
T  12849206 atttaaacacagagagagaagagagaaagagacgacacaagcaaactata 12849255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 520 - 549
Target Start/End: Complemental strand, 21721519 - 21721490
Alignment:
Q  520 tttacacttgatatacaattagaggtgtaa 549  Q
    ||||||||||||||||||||||||||||||    
T  21721519 tttacacttgatatacaattagaggtgtaa 21721490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 43283325 - 43283288
Alignment:
Q  347 tgagagtagtccagtccccttgtacttccaaggaattt 384  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  43283325 tgagagtagtctagtcctcttgtacttccaaggaattt 43283288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 9e-39; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 461 - 670
Target Start/End: Complemental strand, 21620885 - 21620666
Alignment:
Q  461 ctcaaacacacaagtaagagacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaag 560  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |||  | |||||||||||| ||||||    
T  21620885 ctcaaacacacaagtaaaagacttctgcaatcagagttaaacaaataaataagattgtgtttacatttgatattcaaccataggtgtaagaaagttaaag 21620786  T
Q  561 ttcatatgacttttgagtacttaagaaattttaagattgaaagtttgtaagaa-----------ctttgtgcgctatataattcgacagagtaagagcac 649  Q
    | || |||||||| || | ||||| ||||| |||||||||||| |||||||||            |||||| | ||||||||| ||||||||||| |||     
T  21620785 tgcaaatgactttagaatccttaaaaaattctaagattgaaag-ttgtaagaatttctctaagtatttgtgtgttatataatttgacagagtaagggcaa 21620687  T
Q  650 ttgtaaaatgatagaagtctt 670  Q
    ||||||||||||||| |||||    
T  21620686 ttgtaaaatgatagaggtctt 21620666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 507 - 872
Target Start/End: Original strand, 17879927 - 17880306
Alignment:
Q  507 aaataagattgtg-tttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagtacttaagaaattttaagat-tgaaagt 604  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||| ||| ||||||||||||| ||| || |||||||    
T  17879927 aaataagattgtggtttacacttgatatataatcagaggtgtaag-aaatttaagttcatatgacttctga-tacttaagaaattctaatatatgaaagt 17880024  T
Q  605 ttgtaagaa-----------ctttgtgcgctatataattcgacagagtaagagcacttgtaaaatgatagaagtcttct--ttttcttcaactacccagg 691  Q
    |||||||||            |||||| ||||||||||| |||||||||||  ||||| |||||||||||||||||| |  | ||||| |||| | ||      
T  17880025 ttgtaagaatttatgtaagtgtttgtgtgctatataatttgacagagtaaggacacttttaaaatgatagaagtcttgttatgttctttaactgctca-c 17880123  T
Q  692 gtccttatata--tgagaatgagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcct 789  Q
     ||||||||||   |||||||||| || ||||||| |||||| |||| ||||||| ||||||| |||||||  || || | ||||| | | ||||| |||    
T  17880124 atccttatataggagagaatgagaaagtcattgtttaagaagtgtcaacacatcatattagtccttgagaaagttgataagagacgctgagatgttgcct 17880223  T
Q  790 caaatggataatgtcgttgagtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
    |||||| |||||||||||||||||  |||  ||| || |||  | ||||||||||||| |||||  |||||||| | ||||||    
T  17880224 caaatgaataatgtcgttgagtagctattaaaaattcattttcttctaatagaatgatctgttactttctctttgtacttgaa 17880306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 461 - 551
Target Start/End: Complemental strand, 26454231 - 26454141
Alignment:
Q  461 ctcaaacacacaagtaagagacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaaga 551  Q
    ||||||| |||||||||||| |||||| ||| |   || ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26454231 ctcaaacgcacaagtaagagtcttctataattataatttaacaaataaataagattgtgtttacacttgatatacaatcagaggtgtaaga 26454141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 624 - 816
Target Start/End: Original strand, 22731264 - 22731460
Alignment:
Q  624 tatataattcgacagagtaagagcacttgtaaaatgatagaagtcttctt---tttcttcaactacccagggtccttatatatgagaa--tgagagagcc 718  Q
    ||||||||| ||||||||| | |||||||| |||||||||||||||| ||   ||||||||| | | |||| |||||||||| ||||   ||| | ||||    
T  22731264 tatataatttgacagagtacgggcacttgtgaaatgatagaagtcttgttatgtttcttcaagtgctcagg-tccttatataagagagattgatatagcc 22731362  T
Q  719 attgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtca 816  Q
     || ||||||||| |||| | | |||||||| || |||||||| ||  ||| |||||||   ||||||||| ||||||||||||||||||||||||||    
T  22731363 gttattgaagaagtgtcaacgcgtcaaattaatccttgagaagattggtcagagacgtttggatgtttccttaaatggataatgtcgttgagtagtca 22731460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 712 - 872
Target Start/End: Original strand, 21019708 - 21019867
Alignment:
Q  712 gagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagt 811  Q
    ||||| |||||||||||| | | |||| |||||||| ||||||||||||| ||   || ||||||| | ||||| |||||| | |||||||| |||||||    
T  21019708 gagagtcattgttgaaga-gtgacagcgcatcaaatgagtcattgagaagtttgtacatagacgtttagatgttgcctcaactagataatgtggttgagt 21019806  T
Q  812 agtcattcgaaaatcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
    ||||| |||||| |  |||| | ||||| ||||||||||||| |||||||||  |||||||    
T  21019807 agtcactcgaaatttctttgcttctaatggaatgatttgttacattctctttccccttgaa 21019867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 462 - 572
Target Start/End: Original strand, 21019477 - 21019587
Alignment:
Q  462 tcaaacacacaagtaagagacttctacaatcagtgttaaacaaataaataagattgt-gtttacacttgatatacaattagaggtgtaagaaaattaaag 560  Q
    ||||||||| ||| |||||||||||||||| || ||| | ||||||||||||||| |  ||||||||||||||||||| |||| ||||| |||||| |||    
T  21019477 tcaaacacataagaaagagacttctacaattagagtttagcaaataaataagattatattttacacttgatatacaatcagagatgtaaaaaaatt-aag 21019575  T
Q  561 ttcatatgactt 572  Q
    |||| |||||||    
T  21019576 ttcaaatgactt 21019587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 617
Target Start/End: Complemental strand, 21572717 - 21572681
Alignment:
Q  581 ttaagaaattttaagattgaaagtttgtaagaacttt 617  Q
    |||||||||||||||||||||||||||||||||||||    
T  21572717 ttaagaaattttaagattgaaagtttgtaagaacttt 21572681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 741 - 866
Target Start/End: Complemental strand, 8309536 - 8309410
Alignment:
Q  741 atcaaattagtcattgagaagctt-aatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaaatcttttgttcctaat 839  Q
    ||||||| || | ||||||||||| ||| | ||||||||||||||| ||| |||||| ||||||  ||||||||||| |  ||| || |||| || ||||    
T  8309536 atcaaatgagaccttgagaagctttaattagagacgttaaaatgttgccttaaatggttaatgttattgagtagtcacttaaaattcatttgctcttaat 8309437  T
Q  840 agaatgatttgttagattctctttatc 866  Q
    || |||||  |||| ||||||||||||    
T  8309436 agcatgatcagttacattctctttatc 8309410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 787 - 872
Target Start/End: Complemental strand, 19197055 - 19196970
Alignment:
Q  787 cctcaaatggataatgtcgttgagtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
    |||||||| ||||||||||||||||||||||| |||| |  |||| | |||||| ||||| |||||| ||| ||||| || |||||    
T  19197055 cctcaaatagataatgtcgttgagtagtcatttgaaattactttgcttctaataaaatgacttgttatattttctttgtcattgaa 19196970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 520 - 613
Target Start/End: Complemental strand, 8309744 - 8309652
Alignment:
Q  520 tttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagtacttaagaaattttaagat-tgaaagtttgtaagaa 613  Q
    ||||||||||||||||||| ||||||||||| ||| ||| ||||| ||||||| |||   ||||| || || |||||| ||||||||||||||||    
T  8309744 tttacacttgatatacaatcagaggtgtaagcaaa-taatgttcaaatgacttatga-agcttaataatttataagatatgaaagtttgtaagaa 8309652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 15871800 - 15871754
Alignment:
Q  351 agtagtccagtcccctt-gtacttccaaggaatttttcactataatc 396  Q
    ||||||||||||||||| |||||||||||||  ||||||||||||||    
T  15871800 agtagtccagtcccctttgtacttccaaggatattttcactataatc 15871754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 5290823 - 5290766
Alignment:
Q  322 aattatacatgttcctctcacaatttgagagtagtccagtccccttgtacttccaagg 379  Q
    ||||||||  ||||||| ||||| | ||||||||||||||||||||| ||||| ||||    
T  5290823 aattatactagttcctcccacaaatcgagagtagtccagtccccttgcacttctaagg 5290766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 8e-36; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 647 - 872
Target Start/End: Original strand, 8502178 - 8502407
Alignment:
Q  647 cacttgtaaaatgatagaagtcttctt---tttcttcaactacccagggtccttatatatgag--aatgagagagccattgttgaagaagggtcagcaca 741  Q
    ||||| |||||||||||||||||| ||   |||||||||||   |||| ||||||| ||||||  |||||||||||| |||||||||||| |||| | ||    
T  8502178 cacttataaaatgatagaagtcttattatatttcttcaactgttcagg-tccttatgtatgagggaatgagagagccgttgttgaagaagtgtcatcgca 8502276  T
Q  742 tcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaaatcttttgttcctaatag 841  Q
    ||||||||||| ||||||||||| ||||||||| ||  |   |||| |||||||||||||||||||||||||||||| |||| || |||| |  ||||||    
T  8502277 tcaaattagtccttgagaagcttgatcaaagactttggatcttttcttcaaatggataatgtcgttgagtagtcatttgaaattcctttgcttttaatag 8502376  T
Q  842 aatgatttgttagattctctttatccttgaa 872  Q
    |||| | | ||| ||||||||| ||||||||    
T  8502377 aatggtatattacattctctttgtccttgaa 8502407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 704 - 861
Target Start/End: Original strand, 8189878 - 8190035
Alignment:
Q  704 gagaatgagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgt 803  Q
    |||||||||||| || |||||||||||| ||| || |||||||| |||| ||||||||||| |||| |||| || ||   ||||| | ||||||||||||    
T  8189878 gagaatgagagatccgttgttgaagaagtgtctgcgcatcaaataagtccttgagaagcttgatcagagacattgaagcttttccacgaatggataatgt 8189977  T
Q  804 cgttgagtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctct 861  Q
    |  ||||||||||||||||||||||||| | |  |||||||||  ||||| |||||||    
T  8189978 cactgagtagtcattcgaaaatcttttgcttcggatagaatgacctgttacattctct 8190035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 480 - 613
Target Start/End: Original strand, 14116392 - 14116524
Alignment:
Q  480 gacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagta 579  Q
    |||||||||||| || ||| |||||||||||| ||||||| |||||||||||||||||| |||||||||| ||| |||||||  |  |||||| | |  |    
T  14116392 gacttctacaattagagtttaacaaataaata-gattgtgcttacacttgatatacaatcagaggtgtaataaacttaaagtataagtgacttctaaaca 14116490  T
Q  580 cttaagaaattttaagattgaaagtttgtaagaa 613  Q
    ||||| ||||| ||||||||||||||||||||||    
T  14116491 cttaaaaaattctaagattgaaagtttgtaagaa 14116524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 461 - 613
Target Start/End: Original strand, 11434522 - 11434675
Alignment:
Q  461 ctcaaacacacaagtaagagacttctacaatcagtgttaaacaaataaataagattgtgttt--acacttgatatacaattagaggtgtaagaaaattaa 558  Q
    ||||||||||||| |||||||||| |  |||||| ||| |||||||||||||||||||||||  |||||||||||||||| | | |||||||||| ||||    
T  11434522 ctcaaacacacaa-taagagacttttttaatcagagtttaacaaataaataagattgtgtttacacacttgatatacaatcacatgtgtaagaaacttaa 11434620  T
Q  559 agttcatatgacttttgagtacttaagaaattttaagattgaaagtttgtaagaa 613  Q
    ||  ||  ||||||||||  |||||  |||||||| | | |||||||||||||||    
T  11434621 agggcaagtgacttttgaacacttagaaaattttatggtcgaaagtttgtaagaa 11434675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 304 - 415
Target Start/End: Original strand, 8501838 - 8501948
Alignment:
Q  304 aaagagacgacacaagcaaattatacatgttcctctcacaatttgagagtagtccagtccccttgtacttccaaggaatttttcactataatcacgcaag 403  Q
    |||||||||||||||| |||||||||   ||||||||||||   ||||||||||||| ||||||| ||||||||||||||||| ||||||||| | | ||    
T  8501838 aaagagacgacacaagaaaattatactgattcctctcacaaaccgagagtagtccagaccccttgcacttccaaggaattttt-actataatctcactag 8501936  T
Q  404 actacaatttgc 415  Q
    | ||||||||||    
T  8501937 attacaatttgc 8501948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 468 - 613
Target Start/End: Original strand, 8189683 - 8189826
Alignment:
Q  468 acacaagtaagagacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatat 567  Q
    |||||||||||| ||||||| |||||  ||| ||||||||||| |||||||||| |||||||  ||||||| | | |||||||||| ||||||| ||  |    
T  8189683 acacaagtaagaaacttctaaaatcaaagtttaacaaataaatgagattgtgttgacacttg--atacaatcatatgtgtaagaaacttaaagtgcaagt 8189780  T
Q  568 gacttttgagtacttaagaaattttaagattgaaagtttgtaagaa 613  Q
    ||||| |||  |||||||||||| | ||||| |||||||| |||||    
T  8189781 gacttatgaacacttaagaaattatgagatttaaagtttggaagaa 8189826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 704 - 872
Target Start/End: Original strand, 43358080 - 43358248
Alignment:
Q  704 gagaatgagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgt 803  Q
    ||||| |||||||||||||||||||||| | || |||||||  ||||   || |||||||| |||| | |  || | || || ||||||||||||||| |    
T  43358080 gagaacgagagagccattgttgaagaagtgccaacacatcagtttagctcttaagaagcttgatcagaaatattgagattttgcctcaaatggataattt 43358179  T
Q  804 cgttgagtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
    ||| ||||||| |||||||| ||||||| | |||||||||||||  |||| ||||||||| | ||||||    
T  43358180 cgtcgagtagttattcgaaattcttttgcttctaatagaatgatccgttacattctctttgtgcttgaa 43358248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 480 - 613
Target Start/End: Original strand, 11442045 - 11442178
Alignment:
Q  480 gacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagta 579  Q
    |||||||||||| || ||| |||||||||||| || ||| |||| |||||||||||||| |||||| ||| |||  |||||| ||  |||||| |||  |    
T  11442045 gacttctacaataagagtttaacaaataaatacgactgtctttaaacttgatatacaatcagaggtataaaaaacctaaagtgcaagtgacttctgaaca 11442144  T
Q  580 cttaagaaattttaagattgaaagtttgtaagaa 613  Q
    ||||| ||||| |||| || ||||||||||||||    
T  11442145 cttaaaaaattctaaggttcaaagtttgtaagaa 11442178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 480 - 613
Target Start/End: Complemental strand, 11551650 - 11551517
Alignment:
Q  480 gacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagta 579  Q
    |||||||||||| || ||| |||||||||||| || ||| |||| |||||||||||||| |||||| ||| |||  |||||| ||  |||||| |||  |    
T  11551650 gacttctacaataagagtttaacaaataaatacgactgtctttaaacttgatatacaatcagaggtataaaaaacctaaagtgcaagtgacttctgaaca 11551551  T
Q  580 cttaagaaattttaagattgaaagtttgtaagaa 613  Q
    ||||| ||||| |||| || ||||||||||||||    
T  11551550 cttaaaaaattctaaggttcaaagtttgtaagaa 11551517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 615 - 872
Target Start/End: Complemental strand, 4046843 - 4046582
Alignment:
Q  615 tttgtgcgctatataattcgacagagtaagagcacttgtaaaat-gatagaagtcttctt---tttcttcaactacccagggtccttatatatgaga--a 708  Q
    |||||||||||||||||  |||||||||| | ||| |||||||  ||| ||| |||| ||   ||||||||||| | |||| ||||||||||  | |  |    
T  4046843 tttgtgcgctatataatctgacagagtaataacacctgtaaaaaagattgaaatcttattatttttcttcaacttctcagg-tccttatatagaaaataa 4046745  T
Q  709 tgagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttg 808  Q
    ||||||| || |||||||||||| |   ||||||||  | |||| |||||||||||||||| ||||||| ||   ||| |||||||||| ||||||||||    
T  4046744 tgagagaaccgttgttgaagaagtgctcgcacatcag-taagtccttgagaagcttaatcagagacgttgaagctttttctcaaatggagaatgtcgttg 4046646  T
Q  809 agtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
     ||||||| |  ||||| ||||  | |||||| ||||||  | || ||||||||||||||||||    
T  4046645 ggtagtcaatataaaatgtttttcttctaatacaatgatccgctacattctctttatccttgaa 4046582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 480 - 602
Target Start/End: Complemental strand, 13929547 - 13929426
Alignment:
Q  480 gacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagta 579  Q
    |||||||||||| |||||  | |||||||| ||||||||||||| |||||||||||||| ||||||||||| || ||||||   |   ||||| |||  |    
T  13929547 gacttctacaattagtgtgtatcaaataaa-aagattgtgtttatacttgatatacaatcagaggtgtaagtaacttaaagagaaagcgacttctgaaca 13929449  T
Q  580 cttaagaaattttaagattgaaa 602  Q
    ||||||||||| |||||||||||    
T  13929448 cttaagaaattctaagattgaaa 13929426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 740 - 860
Target Start/End: Original strand, 14116672 - 14116792
Alignment:
Q  740 catcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaaatcttttgttcctaat 839  Q
    ||||| ||||||| |||||||  || ||||||| |||| |||  ||  |||  ||||||||||||||||| ||||||||| ||||||||||| | |||||    
T  14116672 catcacattagtccttgagaaatttgatcaaagtcgttgaaactttgtctcttatggataatgtcgttgaatagtcattcaaaaatcttttgcttctaat 14116771  T
Q  840 agaatgatttgttagattctc 860  Q
    |||||||| || || ||||||    
T  14116772 agaatgatctgctacattctc 14116792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 704 - 872
Target Start/End: Complemental strand, 13929310 - 13929144
Alignment:
Q  704 gagaatgagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgt 803  Q
    |||||| | |||||||||||||||||   | || | ||||||||| ||| ||||||| ||| |||| || |||||| |  || | ||  |||||||| ||    
T  13929310 gagaataaaagagccattgttgaagatttgccaactcatcaaattcgtccttgagaaacttgatcagagtcgttaacactttgcttcttatggataacgt 13929211  T
Q  804 cgttgagtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
     ||||| ||||||||| ||||| ||||||| ||||||||  ||||||||| ||||| ||| ||||||||    
T  13929210 tgttgaatagtcattcaaaaatgttttgtttctaataga--gatttgttacattctgtttgtccttgaa 13929144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 413
Target Start/End: Original strand, 17133318 - 17133429
Alignment:
Q  301 gagaaagagacgacacaagcaaattatacatgttcctctcacaatttgagagtagtccagtccccttgtacttccaaggaatttttcactataatcacgc 400  Q
    |||||||||||||||| | |||||||||    ||||||||| ||    |||||||||||||||||||| |||| ||| ||| |||||||| ||||||| |    
T  17133318 gagaaagagacgacactaacaaattatattgcttcctctcataaaccaagagtagtccagtccccttgcactttcaatgaa-ttttcactgtaatcacac 17133416  T
Q  401 aagactacaattt 413  Q
    |||| ||||||||    
T  17133417 aagattacaattt 17133429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 412
Target Start/End: Original strand, 19052736 - 19052797
Alignment:
Q  349 agagtagtccagtccccttgtacttccaaggaatttttcactataatcacgcaagactacaatt 412  Q
    |||||||||||||||||||| |||||||||| |  ||||||||||||||| ||||| |||||||    
T  19052736 agagtagtccagtccccttgcacttccaaggga--tttcactataatcacacaagattacaatt 19052797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 312 - 396
Target Start/End: Original strand, 43357692 - 43357775
Alignment:
Q  312 gacacaagcaaattatacatgttcctctcacaatttgagagtagtccagtccccttgtacttccaaggaatttttcactataatc 396  Q
    ||||||||||||||||||  ||||||||||||  | |||||||||||| ||  |||| |||||||| ||| ||||||||||||||    
T  43357692 gacacaagcaaattatactagttcctctcacagatcgagagtagtccaatcaacttgcacttccaaagaa-ttttcactataatc 43357775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 15193192 - 15193254
Alignment:
Q  351 agtagtccagtccccttgt-acttccaaggaatttttcactataatcacgcaagactacaatt 412  Q
    ||||||||||||||||||| |||| |||| ||||||| ||||||||||| ||||| |||||||    
T  15193192 agtagtccagtccccttgtcacttacaagaaattttttactataatcacacaagattacaatt 15193254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 520 - 660
Target Start/End: Original strand, 17133521 - 17133671
Alignment:
Q  520 tttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagtacttaagaaattttaagat-tgaaagtttgtaagaactt-- 616  Q
    |||||| |||||||||||| | ||||||| |||  |||| ||||||||||||| ||| ||||||||||||| |||| | | |||||||||||||| ||      
T  17133521 tttacaattgatatacaatcacaggtgtacgaagtttaa-gttcatatgacttctga-tacttaagaaattctaagttattaaagtttgtaagaatttct 17133618  T
Q  617 ---------tgtgcgctatataattcgacagagtaagagcacttgtaaaatga 660  Q
             |||| ||||||||||| ||||||||||||| |||||||||||||    
T  17133619 ccaagtgtttgtgagctatataatttgacagagtaagagtacttgtaaaatga 17133671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 13977998 - 13977934
Alignment:
Q  332 gttcctctcacaatttgagagtagtccagtccccttgtacttccaaggaatttttcactataatcac 398  Q
    |||||||||||||   |||||||||| |||||||||| |||| ||||||| ||||||||||||||||    
T  13977998 gttcctctcacaaaccgagagtagtctagtccccttgcactt-caaggaa-ttttcactataatcac 13977934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 352 - 413
Target Start/End: Original strand, 14116288 - 14116349
Alignment:
Q  352 gtagtccagtccccttgtacttccaaggaatttttcactataatcacgcaagactacaattt 413  Q
    ||||| |||| |||||| |||||||| | || ||||||||||||||| ||||| ||||||||    
T  14116288 gtagttcagttcccttgcacttccaatggatatttcactataatcacacaagattacaattt 14116349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 461 - 613
Target Start/End: Original strand, 2439 - 2591
Alignment:
Q  461 ctcaaacacacaagtaagagacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaag 560  Q
    |||||||||||||||| ||||||||| ||| ||| ||| |||||||||||||||||||| | ||||||||| |||||| | | || |||||| |||||||    
T  2439 ctcaaacacacaagtatgagacttcttcaaccagagtttaacaaataaataagattgtgatcacacttgatgtacaatcatatgtttaagaatattaaag 2538  T
Q  561 ttcatatgacttttgagtacttaagaaattttaagattgaaagtttgtaagaa 613  Q
    |||||||||||| |||  |||| ||| ||| ||||||||||||||||||||||    
T  2539 ttcatatgacttctgaacacttgagatattctaagattgaaagtttgtaagaa 2591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 58; Significance: 7e-24; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 704 - 861
Target Start/End: Original strand, 16453 - 16610
Alignment:
Q  704 gagaatgagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgt 803  Q
    |||||||||||| || |||||||||||| ||| || |||||||| |||| ||||||||||| |||| |||| || ||   ||||| | ||||||||||||    
T  16453 gagaatgagagatccgttgttgaagaagtgtctgcgcatcaaataagtccttgagaagcttgatcagagacattgaagcttttccacgaatggataatgt 16552  T
Q  804 cgttgagtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctct 861  Q
    |  ||||||||||||||||||||||||| | |  |||||||||  ||||| |||||||    
T  16553 cactgagtagtcattcgaaaatcttttgcttcggatagaatgacctgttacattctct 16610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 468 - 613
Target Start/End: Original strand, 16258 - 16401
Alignment:
Q  468 acacaagtaagagacttctacaatcagtgttaaacaaataaataagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatat 567  Q
    |||||||||||| ||||||| |||||  ||| ||||||||||| |||||||||| |||||||  ||||||| | | |||||||||| ||||||| ||  |    
T  16258 acacaagtaagaaacttctaaaatcaaagtttaacaaataaatgagattgtgttgacacttg--atacaatcatatgtgtaagaaacttaaagtgcaagt 16355  T
Q  568 gacttttgagtacttaagaaattttaagattgaaagtttgtaagaa 613  Q
    ||||| |||  |||||||||||| | ||||| |||||||| |||||    
T  16356 gacttatgaacacttaagaaattatgagatttaaagtttggaagaa 16401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 3e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 724 - 872
Target Start/End: Complemental strand, 13744366 - 13744218
Alignment:
Q  724 tgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaa 823  Q
    |||||||| | |||||||| |||| | || |||||||||||  ||| ||| | | ||||||| ||||||||||||||| |||||| ||||||||||||||    
T  13744366 tgaagaagtgacagcacatgaaataaatccttgagaagcttgctcagagaagctgaaatgttgcctcaaatggataatatcgttgtgtagtcattcgaaa 13744267  T
Q  824 atcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
    ||||||     ||||||||||||||||||| ||||||||| || |||||    
T  13744266 atctttctcctctaatagaatgatttgttacattctctttgtcattgaa 13744218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 724 - 872
Target Start/End: Complemental strand, 13749866 - 13749718
Alignment:
Q  724 tgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaa 823  Q
    |||||||| | |||||||| |||| | || |||||||||||  ||| ||| | | ||||||| ||||||||||||||| |||||| ||||||||||||||    
T  13749866 tgaagaagtgacagcacatgaaataaatccttgagaagcttgctcagagaagctgaaatgttgcctcaaatggataatatcgttgtgtagtcattcgaaa 13749767  T
Q  824 atcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
    ||||||     ||||||||||||||||||| ||||||||| || |||||    
T  13749766 atctttctcctctaatagaatgatttgttacattctctttgtcattgaa 13749718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 14757779 - 14757840
Alignment:
Q  351 agtagtccagtcccc-ttgtacttccaagga-atttttcactataatcacgcaagactacaa 410  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||||| ||||| |||||    
T  14757779 agtagtccagtcccccttgcacttccaaggagatttttcactataatcacacaagattacaa 14757840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 15478495 - 15478450
Alignment:
Q  351 agtagtccagtccccttgtacttccaaggaatttttcactataatc 396  Q
    |||||||||||||||||| |||||||||||  ||||||||||||||    
T  15478495 agtagtccagtccccttgcacttccaaggagattttcactataatc 15478450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 740 - 821
Target Start/End: Original strand, 35036261 - 35036340
Alignment:
Q  740 catcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattcga 821  Q
    ||||||||||||||| ||||||||| |||  ||||||| |  | ||| ||||||||||||||||||||||||| ||||||||    
T  35036261 catcaaattagtcatcgagaagcttgatccgagacgttgag-tctttactcaaatggataatgtcgttgagta-tcattcga 35036340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 385
Target Start/End: Original strand, 20395700 - 20395735
Alignment:
Q  350 gagtagtccagtccccttgtacttccaaggaatttt 385  Q
    ||||||||||||||||||| ||||||||||||||||    
T  20395700 gagtagtccagtccccttgcacttccaaggaatttt 20395735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 34659377 - 34659424
Alignment:
Q  349 agagtagtccagtccccttgtacttccaaggaatttttcactataatcac 398  Q
    |||||||||||||||||||||||||| |||| |  |||||||||||||||    
T  34659377 agagtagtccagtccccttgtacttctaaggga--tttcactataatcac 34659424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 579 - 608
Target Start/End: Complemental strand, 12870514 - 12870485
Alignment:
Q  579 acttaagaaattttaagattgaaagtttgt 608  Q
    ||||||||||||||||||||||||||||||    
T  12870514 acttaagaaattttaagattgaaagtttgt 12870485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 2e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 704 - 869
Target Start/End: Complemental strand, 24097666 - 24097501
Alignment:
Q  704 gagaatgagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgt 803  Q
    |||| ||||||| || |||||||||||| |||||| ||||||||||||  |||| ||| || || | |||| ||||  ||||  ||||||||||||||||    
T  24097666 gagattgagagacccgttgttgaagaagtgtcagcgcatcaaattagtttttgaaaagtttgattagagacattaagttgttgtctcaaatggataatgt 24097567  T
Q  804 cgttgagtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctctttatcctt 869  Q
    |||||||||||||||| ||| |  |||| | ||||||||||||| | ||| |||||| || |||||    
T  24097566 cgttgagtagtcattcaaaatttatttgcttctaatagaatgatatattacattctcgttgtcctt 24097501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 512 - 818
Target Start/End: Complemental strand, 9829613 - 9829294
Alignment:
Q  512 agattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagtacttaagaaattttaagat-tgaaagtttgtaa 610  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| ||||||| ||||||| ||| ||||||||||||| |||||| ||||| |||||||    
T  9829613 agattgtgtttacacttgatatacaattagaggtgtaa-taaatttaagttca-atgacttctgaatacttaagaaattctaagatatgaaa-tttgtaa 9829517  T
Q  611 gaa-----------ctttgtgcgctatataattcgacagagtaagagcacttgtaaaatgatagaagtc---ttctttttcttcaactacccagggtcct 696  Q
    |||            |||||| | | | ||||| |||||||||||  ||| ||| ||||||| ||||||   || |||||||| || |   || |||| |    
T  9829516 gaatttctctaagtgtttgtgtgttgtgtaatttgacagagtaaggacacctgttaaatgatggaagtcctgttgtttttcttaaattgttca-ggtctt 9829418  T
Q  697 tatata--tgagaatgagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaat 794  Q
    ||||||   |||||||||||||   |||||||||||| ||||   |||||||  |||| ||||||| ||| |||| |||| |  |||  |||||||||||    
T  9829417 tatataggagagaatgagagagttgttgttgaagaagtgtcaatgcatcaaacgagtccttgagaaacttgatcagagacatagaaacttttcctcaaat 9829318  T
Q  795 ggataatgtcgttgagtagtcatt 818  Q
    ||||||||||||||||||||||||    
T  9829317 ggataatgtcgttgagtagtcatt 9829294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 738 - 848
Target Start/End: Original strand, 10686485 - 10686595
Alignment:
Q  738 cacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaaatcttttgttccta 837  Q
    ||||||||||||||| ||||||||||| |||| ||||||  | || || | | || ||||||||||| |||||||||||||||||| ||||||| | |||    
T  10686485 cacatcaaattagtctttgagaagcttgatcagagacgtctatatattgcttaaattggataatgtcattgagtagtcattcgaaattcttttgcttcta 10686584  T
Q  838 atagaatgatt 848  Q
    || ||||||||    
T  10686585 attgaatgatt 10686595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 740 - 847
Target Start/End: Original strand, 27685764 - 27685870
Alignment:
Q  740 catcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaaatcttttgttcctaat 839  Q
    |||||| |||||| | ||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||||| ||||| |||| || |||| | |||||    
T  27685764 catcaatttagtcctcgagaagcttgatcatagacgttgaaatgtttc-tcaaatggataatgttgttgagtactcatttgaaactcatttgcttctaat 27685862  T
Q  840 agaatgat 847  Q
     |||||||    
T  27685863 ggaatgat 27685870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 754 - 862
Target Start/End: Original strand, 20648664 - 20648772
Alignment:
Q  754 ttgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaaatcttttgttcctaatagaatgatttgtta 853  Q
    ||||||||||| |||| ||| ||| ||||||   |||||||||  ||||||||||||||||||||||||| |  |||| |   |||||||||||||||||    
T  20648664 ttgagaagcttcatcagagatgttgaaatgtggtctcaaatggtcaatgtcgttgagtagtcattcgaaatttctttgctttaaatagaatgatttgtta 20648763  T
Q  854 gattctctt 862  Q
     ||||||||    
T  20648764 cattctctt 20648772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 413
Target Start/End: Complemental strand, 12412320 - 12412257
Alignment:
Q  351 agtagtccagtccccttgt-acttccaaggaatttttcactataatcacgcaagactacaattt 413  Q
    ||||||||||||||||||| | || ||||  |||||||||||||||||||||||| ||||||||    
T  12412320 agtagtccagtccccttgttaattacaagagatttttcactataatcacgcaagattacaattt 12412257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 747 - 848
Target Start/End: Original strand, 47597426 - 47597527
Alignment:
Q  747 ttagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaaatcttttgttcctaatagaatga 846  Q
    |||||| ||| ||||||| |||| ||||||| | ||||| | |||||||| ||| ||| |||||||||||||||||| || |||| | | ||| ||||||    
T  47597426 ttagtccttgggaagcttgatcagagacgttgagatgttgcttcaaatggttaacgtcattgagtagtcattcgaaattcctttgcttcaaatggaatga 47597525  T
Q  847 tt 848  Q
    ||    
T  47597526 tt 47597527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 615 - 663
Target Start/End: Complemental strand, 24097759 - 24097711
Alignment:
Q  615 tttgtgcgctatataattcgacagagtaagagcacttgtaaaatgatag 663  Q
    |||||||||||||||||| || | |||||| ||||||||||||||||||    
T  24097759 tttgtgcgctatataatttgataaagtaagggcacttgtaaaatgatag 24097711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 27685514 - 27685581
Alignment:
Q  347 tgagagtagtccagtccccttgtacttccaaggaatttttcactataatcacgcaagactacaatttgc 415  Q
    ||||||||||| ||||| |||| ||||| |||||| |||||||||||||||| || || ||||||||||    
T  27685514 tgagagtagtctagtcctcttgcacttctaaggaa-ttttcactataatcacacaggattacaatttgc 27685581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 519 - 553
Target Start/End: Original strand, 24112314 - 24112348
Alignment:
Q  519 gtttacacttgatatacaattagaggtgtaagaaa 553  Q
    ||||||||| |||||||||||||||||||||||||    
T  24112314 gtttacactagatatacaattagaggtgtaagaaa 24112348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 520 - 549
Target Start/End: Original strand, 12759109 - 12759138
Alignment:
Q  520 tttacacttgatatacaattagaggtgtaa 549  Q
    ||||||||||||||||||||||||||||||    
T  12759109 tttacacttgatatacaattagaggtgtaa 12759138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 4e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 511 - 612
Target Start/End: Original strand, 19761263 - 19761364
Alignment:
Q  511 aagattgtgtttacacttgatatacaattagaggtgtaagaaaattaaagttcatatgacttttgagtacttaagaaattttaagattgaaagtttgtaa 610  Q
    |||||||||||||||||||||||||||| ||| ||||||  || | ||||||||  |||||| | |  ||||||||||||||||||||||| ||||||||    
T  19761263 aagattgtgtttacacttgatatacaatcagaagtgtaattaactcaaagttcaagtgacttctaaagacttaagaaattttaagattgaatgtttgtaa 19761362  T
Q  611 ga 612  Q
    ||    
T  19761363 ga 19761364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 302 - 415
Target Start/End: Original strand, 19761079 - 19761192
Alignment:
Q  302 agaaagagacgacacaagcaaattatacatgttcctctcacaatttgagagtagtccagtccccttgtacttccaaggaatttttcactataatcacgca 401  Q
    ||||||||||||||||| |||||||| |  ||| | |||||||||||||  ||||||| |||||||| |||| ||||  ||||||||||||||||||  |    
T  19761079 agaaagagacgacacaaacaaattatcctggtttccctcacaatttgaggttagtccattccccttgcactttcaagtgatttttcactataatcacata 19761178  T
Q  402 agactacaatttgc 415  Q
    ||| ||||| ||||    
T  19761179 agattacaacttgc 19761192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 740 - 871
Target Start/End: Original strand, 30897011 - 30897142
Alignment:
Q  740 catcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattcgaaaatcttttgttcctaat 839  Q
    ||||||||| ||||||||||||||| |||  || ||||  ||| || | ||||||||||||||| ||||| |||||||||||||||  |||| | |||||    
T  30897011 catcaaattcgtcattgagaagcttgatcggagtcgttggaattttgcatcaaatggataatgttgttgaatagtcattcgaaaattctttgcttctaat 30897110  T
Q  840 agaatgatttgttagattctctttatccttga 871  Q
    |||| |||   ||| ||||||||| |||||||    
T  30897111 agaacgatccattacattctctttgtccttga 30897142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 740 - 818
Target Start/End: Original strand, 22185897 - 22185975
Alignment:
Q  740 catcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcatt 818  Q
    |||||||| |||| |||||||||||||| | ||||||| |||||||||||||| ||  |||||||||||| ||||||||    
T  22185897 catcaaatgagtccttgagaagcttaattagagacgttgaaatgtttcctcaattgattaatgtcgttgactagtcatt 22185975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 615 - 872
Target Start/End: Original strand, 17246070 - 17246331
Alignment:
Q  615 tttgtgcgctatataattcgacagagtaagagcacttgtaaaatgatagaagtcttctt---tttcttcaactacccagggtccttatatatgaga--at 709  Q
    |||||||| |||||| || |||| ||||||  |||||||||||||| ||||||||| ||   ||||||||||| |  ||  |||||| ||| ||||  ||    
T  17246070 tttgtgcgatatatattttgacatagtaaggacacttgtaaaatgacagaagtcttgttatttttcttcaactgcttaga-tccttaaataggagagaat 17246168  T
Q  710 gagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttga 809  Q
     ||||||   || |||||||||  ||||| |||||||| |||| ||||||| ||| |||  ||| ||||| |  || ||||  ||||||||||||  |||    
T  17246169 aagagagttgtttttgaagaagtatcagcgcatcaaataagtccttgagaatcttgatcggagatgttaagactttccctcttatggataatgtcagtga 17246268  T
Q  810 gtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
     | ||||||  |||||| |||||| |||||||||||||| ||||  |||||||| ||||||||    
T  17246269 atggtcattaaaaaatcctttgtttctaatagaatgattcgttattttctctttgtccttgaa 17246331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 713 - 819
Target Start/End: Original strand, 17241522 - 17241627
Alignment:
Q  713 agagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagta 812  Q
    |||| |||||||||||| | | ||||||||||||| |||| ||||||||||| |||| ||| ||| | ||||| |||| ||||  ||||||| |||||||    
T  17241522 agagtcattgttgaaga-gtgccagcacatcaaatgagtccttgagaagcttgatcagagatgttgagatgttacctcgaatgattaatgtcattgagta 17241620  T
Q  813 gtcattc 819  Q
    |||||||    
T  17241621 gtcattc 17241627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 704 - 846
Target Start/End: Original strand, 28623344 - 28623486
Alignment:
Q  704 gagaatgagagagccattgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgt 803  Q
    |||||||| ||||||||||||||||| |  ||||  |||||| | | |  ||||||||||| || | |||| || |||  || ||||  |||||||||||    
T  28623344 gagaatgatagagccattgttgaagatgtatcagtgcatcaattaatttcttgagaagcttgattatagacattgaaaccttgcctcttatggataatgt 28623443  T
Q  804 cgttgagtagtcattcgaaaatcttttgttcctaatagaatga 846  Q
    |||||| ||  |||||||||||| |||| | ||||||||||||    
T  28623444 cgttgaataaacattcgaaaatcatttgcttctaatagaatga 28623486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 720 - 872
Target Start/End: Complemental strand, 6924 - 6774
Alignment:
Q  720 ttgttgaagaagggtcagcacatcaaattagtcattgagaagcttaatcaaagacgttaaaatgtttcctcaaatggataatgtcgttgagtagtcattc 819  Q
    |||||||||||| | || ||||||||||   || |||||||| || |||||| ||||| | ||||| ||| || |||||||| || | ||||||||||||    
T  6924 ttgttgaagaagtgccaacacatcaaata--tccttgagaagtttgatcaaaaacgttgagatgttgccttaattggataatatcatcgagtagtcattc 6827  T
Q  820 gaaa-atcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
    ||||  |||||| || ||||| |||||||| |||| |||||| |||||||||||    
T  6826 gaaatttcttttctt-ctaatggaatgattcgttacattctccttatccttgaa 6774  T

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Target: scaffold0194; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 558
Target Start/End: Complemental strand, 7171 - 7090
Alignment:
Q  479 agacttctacaatc--agtgttaaacaaataaataagattgtgttt-acacttgatatacaattagaggtgtaagaaaattaa 558  Q
    ||||||||||||||  ||| |||| ||||||||  ||||||||||| |||||||||||| ||||| ||||||||||| |||||    
T  7171 agacttctacaatctaagt-ttaatcaaataaaagagattgtgttttacacttgatatataattaaaggtgtaagaagattaa 7090  T

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Target: scaffold0669 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 797 - 872
Target Start/End: Original strand, 4694 - 4769
Alignment:
Q  797 ataatgtcgttgagtagtcattcgaaaatcttttgttcctaatagaatgatttgttagattctctttatccttgaa 872  Q
    ||||| ||||||| |||||||||||||||| |||| | || ||||||||||| |||| |||||| || ||||||||    
T  4694 ataatatcgttgaatagtcattcgaaaatcctttgattcttatagaatgattcgttacattctcattgtccttgaa 4769  T

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Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 353 - 415
Target Start/End: Complemental strand, 9913 - 9851
Alignment:
Q  353 tagtccagtccccttgtacttccaaggaatttttcactataatcacgcaagactacaatttgc 415  Q
    |||||||||||||||| |||||||| | |||||||||||||||||| ||| | |||| |||||    
T  9913 tagtccagtccccttgcacttccaatggatttttcactataatcacacaatattacagtttgc 9851  T

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Target: scaffold0008; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 353 - 415
Target Start/End: Complemental strand, 20306 - 20244
Alignment:
Q  353 tagtccagtccccttgtacttccaaggaatttttcactataatcacgcaagactacaatttgc 415  Q
    ||||| |||||||||| ||| |||| |||||||||||||||||||| ||| | |||| |||||    
T  20306 tagtcgagtccccttgcactaccaatgaatttttcactataatcacacaatattacagtttgc 20244  T

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Target: scaffold0042 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 461 - 553
Target Start/End: Complemental strand, 89629 - 89535
Alignment:
Q  461 ctcaaacacacaagtaagagacttctacaatcagtg-ttaaacaaataaataagattgt--gtttacacttgatatacaattagaggtgtaagaaa 553  Q
    ||||| |||||||| ||||||||||||||||||| | |||| |||||||| ||||||||   ||||||||| |||| |||| |||| |||||||||    
T  89629 ctcaatcacacaagaaagagacttctacaatcagagtttaatcaaataaa-aagattgttgttttacacttaatatgcaatcagagttgtaagaaa 89535  T

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Target: scaffold0042; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 670
Target Start/End: Complemental strand, 89463 - 89408
Alignment:
Q  615 tttgtgcgctatataattcgacagagtaagagcacttgtaaaatgatagaagtctt 670  Q
    |||||||||||| ||||| |||| |||||| |||||||||||||||  ||||||||    
T  89463 tttgtgcgctatttaatttgacaaagtaagggcacttgtaaaatgacggaagtctt 89408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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