View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5424-Insertion-10 (Length: 467)
Name: NF5424-Insertion-10
Description: NF5424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5424-Insertion-10 |
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| [»] scaffold1528 (1 HSPs) |
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Alignment Details
Target: scaffold1528 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: scaffold1528
Description:
Target: scaffold1528; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Complemental strand, 724 - 319
Alignment:
| Q |
8 |
cactttccatacaacaaagccgcagattacaacctaaaaacaagcgtgcagcgttggcaaagagtagcaacacaacacagggaacaacaaatgaaccaga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
724 |
cactttccatacaacaaagccgcagattacaacctaaaaacaggcgtgcagcgttggcaaagagtagcaacacaagtcatggaacaacaaatgaaccaga |
625 |
T |
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| Q |
108 |
gagtttccacttcaaaccagcaatagaatcaatctgtggaaccaatcaccttgtgaaactatcccaaggatcccaacatcattcataaaagagacaacga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
624 |
gagtttccacttcaaaccagcaatagaatcaatctgtggaaccaatcaagttgtgaaactatcccaaggatcccaacatcattcataaaagagacaacga |
525 |
T |
|
| Q |
208 |
tgattttaccatcctacttaggaagaaggacaaaggagatttatcctaattcacaccacaatctggagctagttctagtctcttcacactcgaaggactt |
307 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
524 |
tgattttaccatcctacttagggaaaaggacaaaggagatttatcctaattcacaccacaat-tggagctagttctagtctcttcacactcgaaggactt |
426 |
T |
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| Q |
308 |
ttcactataatttacctgattacgaattgcactaaggcacctagtcttagatgtcttttgcctcaaactatatgtattctacctcaaactagaggaaatt |
407 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
425 |
ttcactataatttacctgattacgaatttcactaagacacctagtcttagatgtcttttgcctcaaactatatgtattctaccccaaactagaggaaatt |
326 |
T |
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| Q |
408 |
ttaatac |
414 |
Q |
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||||||| |
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| T |
325 |
ttaatac |
319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Complemental strand, 17754000 - 17753595
Alignment:
| Q |
8 |
cactttccatacaacaaagccgcagattacaacctaaaaacaagcgtgcagcgttggcaaagagtagcaacacaacacagggaacaacaaatgaaccaga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
17754000 |
cactttccatacaacaaagccgcagattacaacctaaaaacaggcgtgcagcgttggcaaagagtagcaacacaagtcatggaacaacaaatgaaccaga |
17753901 |
T |
|
| Q |
108 |
gagtttccacttcaaaccagcaatagaatcaatctgtggaaccaatcaccttgtgaaactatcccaaggatcccaacatcattcataaaagagacaacga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17753900 |
gagtttccacttcaaaccagcaatagaatcaatctgtggaaccaatcaagttgtgaaactatcccaaggatcccaacatcattcataaaagagacaacga |
17753801 |
T |
|
| Q |
208 |
tgattttaccatcctacttaggaagaaggacaaaggagatttatcctaattcacaccacaatctggagctagttctagtctcttcacactcgaaggactt |
307 |
Q |
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| T |
17753800 |
tgattttaccatcctacttagggaaaaggacaaaggagatttatcctaattcacaccacaat-tggagctagttctagtctcttcacactcgaaggactt |
17753702 |
T |
|
| Q |
308 |
ttcactataatttacctgattacgaattgcactaaggcacctagtcttagatgtcttttgcctcaaactatatgtattctacctcaaactagaggaaatt |
407 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17753701 |
ttcactataatttacctgattacgaatttcactaagacacctagtcttagatgtcttttgcctcaaactatatgtattctaccccaaactagaggaaatt |
17753602 |
T |
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| Q |
408 |
ttaatac |
414 |
Q |
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||||||| |
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| T |
17753601 |
ttaatac |
17753595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 44 - 377
Target Start/End: Complemental strand, 24454574 - 24454235
Alignment:
| Q |
44 |
aaaacaagcgtgcagcgttggcaaagagtagcaacacaacacagggaacaacaaatgaaccagagagtttccacttcaaaccagcaatagaatcaatctg |
143 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24454574 |
aaaacaggcgtgcagcgttggcaaagagtagcaacacaacacatggaacaacaaatgaaccagagagtttccacttcaaaccagcaatagaatcaatctg |
24454475 |
T |
|
| Q |
144 |
tggaaccaatcaccttgtgaaactatcccaaggatcccaacatcattcataaaagagacaacgatgattttaccatcctacttaggaagaaggacaaagg |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
24454474 |
tggaaccaatcaccttgtgaaactatcccaaggatcccaacatcattcataaaagagacaaagatgattttaccatcctacttaggaaaaaggacaaagg |
24454375 |
T |
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| Q |
244 |
agatttatcctaattcacaccacaatctggagctagttctagtctcttcacactcgaaggacttttcactat------aatttacctgattacgaattgc |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| | |
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| T |
24454374 |
agatttatcctaattcacaccacaatctggagctagttctagtctcttcacactcgaaagatttttcactataattataatttacctgattacgaatttc |
24454275 |
T |
|
| Q |
338 |
actaaggcacctagtcttagatgtcttttgcctcaaacta |
377 |
Q |
| |
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|| ||| ||||| ||| || || || |||||||||||||| |
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| T |
24454274 |
accaagacacctggtcctaaatttcctttgcctcaaacta |
24454235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 463
Target Start/End: Complemental strand, 24454244 - 24454168
Alignment:
| Q |
389 |
cctcaaactagaggaaattttaataccggtatatttgtttacaaagactc--agagttttaaacacaattaggctca |
463 |
Q |
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||||||||||| |||||||||||||| ||| ||||| |||||||||||| |||||| |||||||||||||||||| |
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| T |
24454244 |
cctcaaactagtggaaattttaatacatgtaaatttgcttacaaagactcaaagagttgtaaacacaattaggctca |
24454168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 2467987 - 2468067
Alignment:
| Q |
248 |
ttatcctaattcacaccacaatctggagctagttctagtctcttcacactcgaaggacttttcactataatttacctgatta |
329 |
Q |
| |
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|||||||| ||||| ||||||||| ||||| ||| |||| |||||||| ||||| ||||||||||||| |||||||||| |
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| T |
2467987 |
ttatcctagttcactccacaatctatagctacttc-agtcctttcacacttaaaggatttttcactataatatacctgatta |
2468067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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