View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5424-Insertion-11 (Length: 197)
Name: NF5424-Insertion-11
Description: NF5424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5424-Insertion-11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 5e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 10603782 - 10603909
Alignment:
| Q |
8 |
caattttgtcacgtcgaaactcctttgagttgctatcgagtagatccttcacaattttaccataggattctgaatccaggtcgccggatacattgaaaga |
107 |
Q |
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| T |
10603782 |
caattttgtcacgtcgaaactcctttgagttgctatcgagtagatccttcacaattttaccataggattctgaatccaggtcgccggatacattgataga |
10603881 |
T |
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| Q |
108 |
gactggtacagctttctgagttacataa |
135 |
Q |
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| T |
10603882 |
gactggtacagctttctgagttacataa |
10603909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 10603908 - 10603952
Alignment:
| Q |
153 |
aaattctgggtagcttgcaacatccacacgaatttggtgcacctc |
197 |
Q |
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| T |
10603908 |
aaattctgggtagcttgcaacatccacacgaatttggtgaacctc |
10603952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 20982137 - 20982332
Alignment:
| Q |
8 |
caattttgtcacgtcgaaactcctttgagttgctatcgagtagatccttcacaattttaccataggattctgaatccaggtcgccggatacattgaaaga |
107 |
Q |
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| T |
20982137 |
caattttgtcacgtcgagtctcttttgagttgctaacgagtagatcatccacaattttaccataggattctgaatccacgtcgttggatacattgaaaga |
20982236 |
T |
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| Q |
108 |
gact------ggtacagctttctgagttacataatttttatgcaaactatgaaattctgggtagcttgcaacatccacacgaatttggtgcacctc |
197 |
Q |
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| T |
20982237 |
gactgatacagatacagcttcctgagttgcatacttgaaaagcaaactacaaaattctgtgtagcttgcaacatccacacgaatttggtgcacctc |
20982332 |
T |
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