View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5424-Insertion-2 (Length: 1000)
Name: NF5424-Insertion-2
Description: NF5424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5424-Insertion-2 |
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| [»] scaffold0012 (4 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 666; Significance: 0; HSPs: 4)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 23 - 788
Target Start/End: Original strand, 152789 - 153551
Alignment:
| Q |
23 |
ttgagagatttcttcctgcattttgtttcagttttgtggtaatctccttttctatggagttatttctctattttcataaataaaaataagtattatttct |
122 |
Q |
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| T |
152789 |
ttgagagatttcttcctgcattttgtttcagttttgtggtaatctccttttctatggagatatttctctattttcataaataaaaataagtattatttct |
152888 |
T |
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| Q |
123 |
ttttctatgattaattctattctgtcacgtcaacaagaacaaggttttgtgctttggaggttgttgatttgttctcatttagattttcatagttgtacca |
222 |
Q |
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| T |
152889 |
ttttctatgattaattctattctgtcacgtcgacaagaacaaggttttgagctttggagggtgttgatttgttctcatttagattttcatagttgtacca |
152988 |
T |
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| Q |
223 |
ttgcgaattcgtagtttatattgtagattttcgatttcacgttatttcacgtcaatgaatttacaataaccatacaatgatctcctatcagtcatactac |
322 |
Q |
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| T |
152989 |
ttgcgaattcgtagtttatattgtagattttcgatttcagataatttcacgtcaatgaatttacaataaccatacaatgatctcctatcagtcatactac |
153088 |
T |
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| Q |
323 |
gtgtcaatctcttttagtatcgacttctagataaaccttcttcgatatatcaaaatccgtaaacaactaaggtgttgcagtctttgatatcgttctctat |
422 |
Q |
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| T |
153089 |
gtgtcaatctcttttagtatcgacttctagataaaccctcttcgatatatcaaaatccataaacaactaaggtgttgcagtctttgatatctttctctat |
153188 |
T |
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| Q |
423 |
ctatcacttgatttgcctttgaggctgcgtctttttattaggtttaattaatgataatttcttcttctttagtacattctttcttttgattatgattata |
522 |
Q |
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| T |
153189 |
ctatcacttgatttgcctttgaggctgcgtctttttattaggtttaattaatgataattttttctgctttagtacattctttcttttgtttatgattata |
153288 |
T |
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| Q |
523 |
tttataattgatctataattgacctataatttcaaacatcctgataacttctcattcaagcttgggagttcaacatagttattatttcttagaataatat |
622 |
Q |
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| T |
153289 |
tttataattgatctataattgacctataatttcaaacatcctgataacttctcattcaagcttgggagttcaacatagttattatttcttagaataatat |
153388 |
T |
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| Q |
623 |
cattgacataaaatatgaaaattttgatatatgcgtagatgattaaggatcttgtgatttcttttannnnnnnaaacagggctttgaagagtacattaat |
722 |
Q |
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| T |
153389 |
cattgacataaaatatg-aaattttgatatatgcgtagatgattaaggatcttgtgatttattttatttttttaaacagggctttgaagagtacattaat |
153487 |
T |
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| Q |
723 |
ttggttttggatgacgctgaagaagtacgcgtgaagaaaaagagcaaaaagcgacgtttggtaaga |
788 |
Q |
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| T |
153488 |
ttggttttggatgacgctgaagaagtacgagtgaagaaaaagagcaaaaa--gacgtttggtaaga |
153551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 158645 - 158704
Alignment:
| Q |
6 |
cactcttgatatggaaattgagagatttcttcctgcattttgtttcagttttgtggtaat |
65 |
Q |
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| T |
158645 |
cactcttgatctggaaatcgagagtttttttcctgcattttgtttcagttttgtgctaat |
158704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 271
Target Start/End: Original strand, 160905 - 161004
Alignment:
| Q |
173 |
gctttggaggttgttgatttgttctcattt-agattttcatagttgtaccattgcgaattcgtagtttatattgtagattttcgatttcacgttatttca |
271 |
Q |
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| T |
160905 |
gctttggatgttgttgatttgttctcatagcatattttcatagctgtagcgttgggaactcgtagtttgtgttgtagattttcaatttcacatgatttca |
161004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 161073 - 161123
Alignment:
| Q |
272 |
cgtcaatgaatttacaataaccatacaatgatctcctatcagtcatactac |
322 |
Q |
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| T |
161073 |
cgtcaatgaatttacgatgaccatgcattgatctcctatcagtcatactac |
161123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 700 - 893
Target Start/End: Original strand, 44989634 - 44989821
Alignment:
| Q |
700 |
agggctttgaagagtacattaatttggttttggatgacgctgaagaagtacgcgtgaagaaaaagagcaaaaagcgacgtttggtaagataagtttctca |
799 |
Q |
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| T |
44989634 |
agggttttgatgaatacatgaatttggttttggatgatgctgaagaagtaaacgtcaagaagaagagcaaaaa--gacactaggtaagataaatttctca |
44989731 |
T |
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| Q |
800 |
aattttattcaatttttctttgctatttatgcattttctgagtgatgttattgttttggatcagggaggattccttcttaaagaagacaacata |
893 |
Q |
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| T |
44989732 |
aagtttatcctttttgtctttgcaacatatgcattttctgaatgatgttattgtt---gattagggagga-tccttcttaaaggagataacata |
44989821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 696 - 893
Target Start/End: Original strand, 30884584 - 30884778
Alignment:
| Q |
696 |
aaacagggctttgaagagtacattaatttggttttggatgacgctgaagaagtacgcgtgaagaaaaagagcaaaaagcgacgtttggtaagataagttt |
795 |
Q |
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| T |
30884584 |
aaacagggttttgacgagtacatgaatttggttttggacgatgctgaagaagtaaacgtcaagaagaagagcaaaaa--aacattaggtaatacatgttt |
30884681 |
T |
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| Q |
796 |
ctcaaatttt-attcaatttttctttgctatttatgcattttctgagtgatgttattgttttggatcagggaggattccttcttaaagaagacaacata |
893 |
Q |
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| T |
30884682 |
cttatattttgattatatttgtctttgccactcatgcattttctgaagggtgttattgtttt-gattagggagga-tccttcttaaaggagacaacata |
30884778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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