View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5424-Insertion-4 (Length: 860)
Name: NF5424-Insertion-4
Description: NF5424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5424-Insertion-4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 59 - 529
Target Start/End: Original strand, 12186313 - 12186784
Alignment:
| Q |
59 |
tctttgctttgagttttcctctaataaagtattgttgcttattcttaatgtgttttatgctatattcaggtgaatgaaagttaatgtaatgatctatctg |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12186313 |
tctttgctttgagttttcctctaataaagtattgttgcttattcttaatgtgttttatgctatattcaggtgaatgaaagttaatgtaatgatctatctg |
12186412 |
T |
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| Q |
159 |
cttgtcatggnnnnnnntgttaagacaaccaagaagacaaaagaagattgcatgttagcatacaagattttgatctttctgttaaccaagttttaactta |
258 |
Q |
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| T |
12186413 |
cttgtcatggaaaaaaatgttaagacaaccaagaagacagaagaagattgcatgttagcatacaagattttgatctttctgttaaccaagttttaactta |
12186512 |
T |
|
| Q |
259 |
gagacaatcaaaggaattaattaccgattcgaacgaagtaatatctaggtggaattgttcaacaaatagaaggttcattagaaaacgaatggcttccttg |
358 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12186513 |
gagacaatcaaaggaattaattacagattcgaacgaagtaatatctaggtggaattgttcaacaaatagaaggttcattagaaaacgaatggcttccttg |
12186612 |
T |
|
| Q |
359 |
ggctgatgggaagcacagtaaccatgaatgatatacaagtatatgtaacagtttggaaggtgtcaagaggatataatttcagcgcaaagatcaagagttg |
458 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
12186613 |
ggctgatgggaagcaaagtaaccatgaatgatatacaagtatatgtaatagtttggaaggtgtcaagaggatataatttcggcgtaaagatcaagagttg |
12186712 |
T |
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| Q |
459 |
tgacaatatgatttgaccataaaaaccatatg-aaaaaactgtcaattacagtctagtacattactacatta |
529 |
Q |
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| T |
12186713 |
tgacaatatgatttggccataaaagccatatgaaaaaaaccgtcaatgacagtctcgtacattactacatta |
12186784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 668 - 860
Target Start/End: Original strand, 12187341 - 12187533
Alignment:
| Q |
668 |
tctgctttaataaagtattgttacttattcttaacgtgttttcttctatattcaggtgaatgaaagttaccgtaacgatatggggtgtggttatgagtag |
767 |
Q |
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| T |
12187341 |
tctgctttaataaaatattgttacttattcttaacgtgttttctgctatattcaggtgaatgaaaattactgtaacgatatggagtgtgattgtgaggag |
12187440 |
T |
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| Q |
768 |
tcttgatgtatgcttgagttttgtccgggtcaagtaagtcacttgctattaattaatgttagtggagtttgtactcctcgtctagttgctttg |
860 |
Q |
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| T |
12187441 |
ttttgatgtatgcttgagttttgtccgagtcaaataagtcagttgctattaactgaagttactggagtttctactcttcgtctagttgctttg |
12187533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 567 - 669
Target Start/End: Original strand, 12186808 - 12186908
Alignment:
| Q |
567 |
ctagccttaagaacaccagctaaaccatacagtcacagatagtgaattaatgtgccgaaatgtaatatcattcaacagaaacatgattttacagtaagtg |
666 |
Q |
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| T |
12186808 |
ctagccttaagaacaccagctaaaccatacagtcacagatagtgaattaatgtgccg-aatgtaatatcattcaacagaaacatgatttt-cagtaagtg |
12186905 |
T |
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| Q |
667 |
atc |
669 |
Q |
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| T |
12186906 |
atc |
12186908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 12186186 - 12186242
Alignment:
| Q |
8 |
tttagtgtttagtttcgaaaatgaaactggaaatgaaatctctctatcgaatctttg |
64 |
Q |
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| T |
12186186 |
tttagtgtttagtttcgaaaatgaaactggaaatgaaatctctctatcgaatctttg |
12186242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 675 - 736
Target Start/End: Original strand, 12186334 - 12186395
Alignment:
| Q |
675 |
taataaagtattgttacttattcttaacgtgttttcttctatattcaggtgaatgaaagtta |
736 |
Q |
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| T |
12186334 |
taataaagtattgttgcttattcttaatgtgttttatgctatattcaggtgaatgaaagtta |
12186395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 12187348 - 12187415
Alignment:
| Q |
80 |
taataaagtattgttgcttattcttaatgtgttttatgctatattcaggtgaatgaaagttaatgtaa |
147 |
Q |
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| T |
12187348 |
taataaaatattgttacttattcttaacgtgttttctgctatattcaggtgaatgaaaattactgtaa |
12187415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 8980018 - 8980092
Alignment:
| Q |
186 |
accaagaagacaaaagaagattgcatgttagcatacaagattttgatctttctgttaaccaagttttaacttaga |
260 |
Q |
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| T |
8980018 |
accaagaagacaaacgaagattgcatgctacaatagaagattttgagctttatgttaactaagttgtaacttaga |
8980092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 821 - 860
Target Start/End: Original strand, 2392147 - 2392186
Alignment:
| Q |
821 |
taatgttagtggagtttgtactcctcgtctagttgctttg |
860 |
Q |
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| T |
2392147 |
taatgttagtggagtttctactcctcgtctagttgttttg |
2392186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 5446195 - 5446132
Alignment:
| Q |
59 |
tctttgctttgagttttcctctaataaagtattgttgcttatt-cttaatgtgttttatgctatat |
123 |
Q |
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| T |
5446195 |
tcttttctttgaattttcctctca--aagtattgttgcttattacttaatgtgttttctgctatat |
5446132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 5455239 - 5455176
Alignment:
| Q |
59 |
tctttgctttgagttttcctctaataaagtattgttgcttatt-cttaatgtgttttatgctatat |
123 |
Q |
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| T |
5455239 |
tcttttctttgaattttcctctca--aagtattgttgcttattacttaatgtgttttctgctatat |
5455176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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