View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5424_high_6 (Length: 239)

Name: NF5424_high_6
Description: NF5424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5424_high_6
NF5424_high_6
[»] chr1 (9 HSPs)
chr1 (1-175)||(35636414-35636588)
chr1 (1-158)||(35631686-35631854)
chr1 (177-222)||(5155438-5155483)
chr1 (177-222)||(8211221-8211266)
chr1 (177-222)||(20493691-20493736)
chr1 (177-218)||(16529599-16529640)
chr1 (175-203)||(11074512-11074540)
chr1 (177-209)||(12973502-12973534)
chr1 (177-209)||(40095529-40095561)
[»] chr4 (6 HSPs)
chr4 (175-222)||(29636714-29636761)
chr4 (175-222)||(50571053-50571100)
chr4 (176-222)||(36077514-36077560)
chr4 (177-222)||(42557667-42557712)
chr4 (170-222)||(29644220-29644272)
chr4 (177-218)||(40900182-40900223)
[»] chr7 (13 HSPs)
chr7 (176-222)||(10671762-10671808)
chr7 (177-222)||(3213317-3213362)
chr7 (177-222)||(11206453-11206498)
chr7 (177-222)||(47069611-47069656)
chr7 (166-222)||(8769058-8769114)
chr7 (177-218)||(47204556-47204597)
chr7 (167-209)||(29628040-29628082)
chr7 (177-222)||(12117542-12117587)
chr7 (176-209)||(45898168-45898201)
chr7 (177-209)||(10338918-10338950)
chr7 (174-218)||(18673289-18673333)
chr7 (177-209)||(27054840-27054872)
chr7 (177-209)||(30079700-30079732)
[»] chr6 (6 HSPs)
chr6 (176-222)||(5874247-5874293)
chr6 (177-222)||(12270499-12270544)
chr6 (177-209)||(20500507-20500539)
chr6 (177-218)||(10494480-10494521)
chr6 (177-218)||(35040309-35040350)
chr6 (177-209)||(13810977-13811009)
[»] chr5 (10 HSPs)
chr5 (176-222)||(11917347-11917393)
chr5 (177-222)||(667709-667754)
chr5 (177-222)||(8408933-8408978)
chr5 (177-222)||(27886511-27886556)
chr5 (170-222)||(30001947-30001999)
chr5 (177-222)||(701162-701207)
chr5 (177-222)||(15068403-15068448)
chr5 (178-218)||(30265890-30265930)
chr5 (180-218)||(23780770-23780808)
chr5 (180-218)||(23867723-23867761)
[»] chr3 (8 HSPs)
chr3 (176-222)||(51149752-51149798)
chr3 (177-222)||(10369154-10369199)
chr3 (177-222)||(34794537-34794582)
chr3 (177-222)||(35402300-35402345)
chr3 (176-222)||(4669742-4669788)
chr3 (171-208)||(33360947-33360984)
chr3 (174-218)||(9827877-9827921)
chr3 (177-209)||(38652096-38652128)
[»] chr2 (4 HSPs)
chr2 (177-222)||(9811333-9811378)
chr2 (177-222)||(36413735-36413780)
chr2 (177-222)||(16578578-16578623)
chr2 (176-218)||(44979868-44979910)
[»] scaffold0308 (1 HSPs)
scaffold0308 (177-222)||(5978-6023)
[»] chr8 (6 HSPs)
chr8 (181-222)||(3006667-3006708)
chr8 (177-222)||(5803341-5803386)
chr8 (175-209)||(12883838-12883872)
chr8 (177-218)||(10661096-10661137)
chr8 (177-218)||(36910430-36910471)
chr8 (177-209)||(40436378-40436410)
[»] scaffold0029 (1 HSPs)
scaffold0029 (177-220)||(40682-40725)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 35636588 - 35636414
Alignment:
Q  1 ccttttcaatttcatcattcaacatcatcacactatcatatacgctgttcttttctcaaccacttaatcaatctttattaaaaaatgtttcaatttttac 100  Q
    |||||||||||||||||||||| |||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35636588 ccttttcaatttcatcattcaaaatcatcacactatcatgtacgctcttcttttcccaaccacttaatcaatctttattaaaaaatgtttcaatttttac 35636489  T
Q  101 ttataatagaacatcattacaaaattttataaaacggaacaagacgaagaagaaggcacaaatttatacttatta 175  Q
    ||||||| |||||||||||||||||||||||||| |||  || |||||||||||||||||||||| |||||||||    
T  35636488 ttataattgaacatcattacaaaattttataaaatggagtaaaacgaagaagaaggcacaaatttgtacttatta 35636414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 35631854 - 35631686
Alignment:
Q  1 ccttttcaatttcatcattcaacatcatcacactatcatatacgctgttcttttctcaaccacttaatcaatctttatta------------aaaaatgt 88  Q
    ||||||||||||||||||||| ||||||||||||||||  || |||| || |||||||||||||||||||||||| ||||            ||||||||    
T  35631854 ccttttcaatttcatcattcatcatcatcacactatcacgta-gctggtcatttctcaaccacttaatcaatcttaattaggatgagaccaaaaaaatgt 35631756  T
Q  89 ttcaatttttacttataatagaacatcattacaaaattttataaaacggaacaagacgaagaagaaggca 158  Q
    |||||||||||||||||| |||||| |||||||||||||||  ||||| |||||||| |||| |||||||    
T  35631755 ttcaatttttacttataaaagaacaacattacaaaattttaagaaacgtaacaagaccaagatgaaggca 35631686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 5155483 - 5155438
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5155483 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 5155438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 8211221 - 8211266
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8211221 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 8211266  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 20493691 - 20493736
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  20493691 taggggtgttcgcggtgcggtttggttcggtttcaagcataataat 20493736  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 16529640 - 16529599
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataa 218  Q
    ||||||||||||||||||||||||||| |||||  |||||||    
T  16529640 taggggtgttcgcggtgcggtttggttcggttttgagcataa 16529599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 11074540 - 11074512
Alignment:
Q  175 agtaggggtgttcgcggtgcggtttggtt 203  Q
    |||||||||||||||||||||||||||||    
T  11074540 agtaggggtgttcgcggtgcggtttggtt 11074512  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 12973502 - 12973534
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggttt 209  Q
    ||||||||||||||||||||||||||| |||||    
T  12973502 taggggtgttcgcggtgcggtttggttcggttt 12973534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 40095561 - 40095529
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggttt 209  Q
    ||||||||||||||||||||||||||| |||||    
T  40095561 taggggtgttcgcggtgcggtttggttcggttt 40095529  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 29636714 - 29636761
Alignment:
Q  175 agtaggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29636714 agtaggggtgttcgcggtgcggtttggttcggtttcaagcataataat 29636761  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 50571100 - 50571053
Alignment:
Q  175 agtaggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  50571100 agtaggggtgttcgcggtgcggtttggttcggtttcaagcataataat 50571053  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 36077514 - 36077560
Alignment:
Q  176 gtaggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  36077514 gtaggggtgttcgcggtgcggtttggttcggtttcaagcataataat 36077560  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 42557667 - 42557712
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  42557667 taggggtgttcgcggtgcggtttggttcggtttcaagcataataat 42557712  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 29644272 - 29644220
Alignment:
Q  170 ttattagtaggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    |||||| ||||||||||||||||||||||||||| |||||||| |||||||||    
T  29644272 ttattattaggggtgttcgcggtgcggtttggttcggtttcaaacataataat 29644220  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 40900223 - 40900182
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataa 218  Q
    ||||||||||||||||||||||||||| |||||  |||||||    
T  40900223 taggggtgttcgcggtgcggtttggttcggttttgagcataa 40900182  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 10671762 - 10671808
Alignment:
Q  176 gtaggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  10671762 gtaggggtgttcgcggtgcggtttggttcggtttcaagcataataat 10671808  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 3213362 - 3213317
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  3213362 taggggtgttcgcggtgcggtttggttcggtttcaagcataataat 3213317  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 11206498 - 11206453
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  11206498 taggggtgttcgcggtgcggtttggttcggtttcaagcataataat 11206453  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 47069611 - 47069656
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  47069611 taggggtgttcgcggtgcggtttggttcggtttcaagcataataat 47069656  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 8769114 - 8769058
Alignment:
Q  166 atacttattagtaggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  8769114 atacttattgttaggggtgttcgcggtgcggtttggttcggtttcaagtataataat 8769058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 47204597 - 47204556
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataa 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  47204597 taggggtgttcgcggtgcggtttggttcggtttcaagcataa 47204556  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 29628040 - 29628082
Alignment:
Q  167 tacttattagtaggggtgttcgcggtgcggtttggtttggttt 209  Q
    ||||||| ||||||||||||||||||||||||||||| |||||    
T  29628040 tacttatgagtaggggtgttcgcggtgcggtttggttcggttt 29628082  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 12117542 - 12117587
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    |||||||||| |||||||||||||||| ||||||||| ||||||||    
T  12117542 taggggtgtttgcggtgcggtttggttcggtttcaagtataataat 12117587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 45898201 - 45898168
Alignment:
Q  176 gtaggggtgttcgcggtgcggtttggtttggttt 209  Q
    |||||||||||||||||||||||||||| |||||    
T  45898201 gtaggggtgttcgcggtgcggtttggttcggttt 45898168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 10338950 - 10338918
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggttt 209  Q
    |||||||||||||||||| ||||||||||||||    
T  10338950 taggggtgttcgcggtgcagtttggtttggttt 10338918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 18673333 - 18673289
Alignment:
Q  174 tagtaggggtgttcgcggtgcggtttggtttggtttcaagcataa 218  Q
    |||||||||||||||||||||| ||||||| |||||  |||||||    
T  18673333 tagtaggggtgttcgcggtgcgatttggttcggttttgagcataa 18673289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 27054872 - 27054840
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggttt 209  Q
    |||||||||| ||||||||||||||||||||||    
T  27054872 taggggtgtttgcggtgcggtttggtttggttt 27054840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 30079732 - 30079700
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggttt 209  Q
    ||||||||||| |||||||||||||||||||||    
T  30079732 taggggtgttcccggtgcggtttggtttggttt 30079700  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 5874293 - 5874247
Alignment:
Q  176 gtaggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  5874293 gtaggggtgttcgcggtgcggtttggttcggtttcaagcataataat 5874247  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 12270499 - 12270544
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||    
T  12270499 taggggtgttcgcggtgcggtttggttcggtttcaaacataataat 12270544  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 20500507 - 20500539
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggttt 209  Q
    |||||||||||||||||||||||||||||||||    
T  20500507 taggggtgttcgcggtgcggtttggtttggttt 20500539  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 10494521 - 10494480
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataa 218  Q
    |||||||||| ||||||||||||||||||||||  |||||||    
T  10494521 taggggtgtttgcggtgcggtttggtttggttttgagcataa 10494480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 35040350 - 35040309
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataa 218  Q
    ||||||||||||||||||||||||||| |||||  |||||||    
T  35040350 taggggtgttcgcggtgcggtttggttcggttttgagcataa 35040309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 13811009 - 13810977
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggttt 209  Q
    ||||||||||||||||| |||||||||||||||    
T  13811009 taggggtgttcgcggtgaggtttggtttggttt 13810977  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 11917347 - 11917393
Alignment:
Q  176 gtaggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  11917347 gtaggggtgttcgcggtgcggtttggttcggtttcaagcataataat 11917393  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 667754 - 667709
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  667754 taggggtgttcgcggtgcggtttggttcggtttcaagcataataat 667709  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 8408933 - 8408978
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  8408933 taggggtgttcgcggtgcggtttggttcggtttcaagcataataat 8408978  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 27886556 - 27886511
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  27886556 taggggtgttcgcggtgcggtttggttcggtttcaagcataataat 27886511  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 30001947 - 30001999
Alignment:
Q  170 ttattagtaggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  30001947 ttattactagggttgttcgcggtgcggtttggttcggtttcaagcataataat 30001999  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 701162 - 701207
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||    
T  701162 taggggtgtttgcggtgcggtttggttcggtttcaagcataataat 701207  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 15068403 - 15068448
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||    
T  15068403 taggggtgttcgcggtgcggtttggttcggttttaagcataataat 15068448  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 30265930 - 30265890
Alignment:
Q  178 aggggtgttcgcggtgcggtttggtttggtttcaagcataa 218  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  30265930 aggggtgttcgcggtgcggtttggtttggttttgagcataa 30265890  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 23780770 - 23780808
Alignment:
Q  180 gggtgttcgcggtgcggtttggtttggtttcaagcataa 218  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  23780770 gggtgttcgcggtgcggtttggttcggttttaagcataa 23780808  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 23867723 - 23867761
Alignment:
Q  180 gggtgttcgcggtgcggtttggtttggtttcaagcataa 218  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  23867723 gggtgttcgcggtgcggtttggttcggttttaagcataa 23867761  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 51149798 - 51149752
Alignment:
Q  176 gtaggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  51149798 gtaggggtgttcgcggtgcggtttggttcggtttcaagcataataat 51149752  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 10369154 - 10369199
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  10369154 taggggtgttcgcggtgcggtttggttcggtttcaagcataataat 10369199  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 34794537 - 34794582
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  34794537 taggggtgttcgcggtgcggtttggttcggtttcaagcataataat 34794582  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 35402345 - 35402300
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  35402345 taggggtgttcgcggtgcggtttggttcggtttcaagcataataat 35402300  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 4669788 - 4669742
Alignment:
Q  176 gtaggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||||    
T  4669788 gtaggagtgtttgcggtgcggtttggttcggtttcaagcataataat 4669742  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 33360947 - 33360984
Alignment:
Q  171 tattagtaggggtgttcgcggtgcggtttggtttggtt 208  Q
    |||| |||||||||||||||||||||||||||||||||    
T  33360947 tatttgtaggggtgttcgcggtgcggtttggtttggtt 33360984  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 9827921 - 9827877
Alignment:
Q  174 tagtaggggtgttcgcggtgcggtttggtttggtttcaagcataa 218  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||||    
T  9827921 tagtaggggtgttcgcggtgcggcttggttcggttttaagcataa 9827877  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 38652128 - 38652096
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggttt 209  Q
    ||||||| |||||||||||||||||||||||||    
T  38652128 taggggtattcgcggtgcggtttggtttggttt 38652096  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 9811333 - 9811378
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  9811333 taggggtgttcgcggtgcggtttggttcggtttcaagcataataat 9811378  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 36413780 - 36413735
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  36413780 taggggtgttcgcggtgcggtttggttcggtttcaagcataataat 36413735  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 16578578 - 16578623
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||    
T  16578578 taggggtgttcgcgatgcggtttggttcggtttcaagcataataat 16578623  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 44979910 - 44979868
Alignment:
Q  176 gtaggggtgttcgcggtgcggtttggtttggtttcaagcataa 218  Q
    |||||||||||||||||||||||||||| |||||  |||||||    
T  44979910 gtaggggtgttcgcggtgcggtttggttcggttttgagcataa 44979868  T

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Target: scaffold0308 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 6023 - 5978
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||    
T  6023 taggggtgttcgcggtgcggtttggttcgatttcaagcataataat 5978  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 3006708 - 3006667
Alignment:
Q  181 ggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  3006708 ggtgttcgcggtgcggtttggttcggtttcaagcataataat 3006667  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 5803386 - 5803341
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataataat 222  Q
    ||||||||||||| ||||||||||||| | ||||||||||||||||    
T  5803386 taggggtgttcgcagtgcggtttggttcgatttcaagcataataat 5803341  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 12883872 - 12883838
Alignment:
Q  175 agtaggggtgttcgcggtgcggtttggtttggttt 209  Q
    ||||||||||||||||||||||||||||| |||||    
T  12883872 agtaggggtgttcgcggtgcggtttggttcggttt 12883838  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 10661096 - 10661137
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataa 218  Q
    ||||||||||||||||||||||||||| |||||  |||||||    
T  10661096 taggggtgttcgcggtgcggtttggttcggttttgagcataa 10661137  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 36910471 - 36910430
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataa 218  Q
    ||||||||||||||||||||||||||||| |||  |||||||    
T  36910471 taggggtgttcgcggtgcggtttggtttgattttgagcataa 36910430  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 40436378 - 40436410
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggttt 209  Q
    ||||||||||||||||||||||||||| |||||    
T  40436378 taggggtgttcgcggtgcggtttggttcggttt 40436410  T

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Target: scaffold0029 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 40725 - 40682
Alignment:
Q  177 taggggtgttcgcggtgcggtttggtttggtttcaagcataata 220  Q
    ||||||||||||||||||||||||||| |||||  |||||||||    
T  40725 taggggtgttcgcggtgcggtttggttcggttttgagcataata 40682  T

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