View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5424_low_1 (Length: 640)
Name: NF5424_low_1
Description: NF5424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5424_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 19 - 621
Target Start/End: Complemental strand, 52761978 - 52761376
Alignment:
| Q |
19 |
tcatctatctgaattagcattatttatatactacattgataaatcttgtttaaatcaattcttcagcttaatgaagataaaagcccattccaacagacct |
118 |
Q |
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| T |
52761978 |
tcatctatctgaattagcattatttatatactacattgataaatcttgtttaaatcaattcttcagcttaatgaagataaaagcccattccaacagacct |
52761879 |
T |
|
| Q |
119 |
acgcttcacaggtacctataacatctatgtatgcatttaaaaaggttgagactcctcaatttcaaatgattgtgtattgaactccaaaacaattaaatgc |
218 |
Q |
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| T |
52761878 |
acgcttcacaggtacctataacatctatgtatgcatttaaaaaggttgagactcttcaatttcaaatgattgtgtattgaactccaaaacaattaaatgc |
52761779 |
T |
|
| Q |
219 |
ttcttttgattttcatttggaaatttgaccaaaatctatcattatcatgaaatctaattctgctaacatttttattatgagacattttacacaactgatt |
318 |
Q |
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| T |
52761778 |
ttcttttgattttcatttggaaatttgaccaagatctatcattatcatgaaatctaattctgctaacatttttattatgagacattttacacaactgatt |
52761679 |
T |
|
| Q |
319 |
tactagaccagattggaaagcttacggttttatcaaataggttaaaagatgtggggaaatgtcccgtaagttgcgtttatttaaggagcaaatgaaaaag |
418 |
Q |
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| T |
52761678 |
tactagaccagattggaaagcttacggttttatcaaataggttaaaagatgtggggaaatgtcgcgtaagttgcgtttatttaaggagcaaatgaaaaag |
52761579 |
T |
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| Q |
419 |
gcaaatatatctccgtcaacatggtcaacgagagatggttctattgatctagaaaaattggaggttgtcaggtgtttttaaaattttcatatcttttcta |
518 |
Q |
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| T |
52761578 |
gcaaatatatctccgtcaacatggtcaacaagagatggttctattgatctagaaaaattggaggttgtcaggtgtttttaaaattttcatatcttttcta |
52761479 |
T |
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| Q |
519 |
ccgtacatttaagatagcattgccatgcaacacaatttttcttcatggatataggttaaactagcagaacttgaagctgagctaattgagattaattcaa |
618 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52761478 |
ccgtacatttaagagagcattgccatgtaacacaatttttcttcatggatataggttaaactagcagaacttgaagccgagctaattgagattaattcaa |
52761379 |
T |
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| Q |
619 |
aca |
621 |
Q |
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| T |
52761378 |
aca |
52761376 |
T |
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