View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5424_low_3 (Length: 355)

Name: NF5424_low_3
Description: NF5424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5424_low_3
NF5424_low_3
[»] chr4 (12 HSPs)
chr4 (72-163)||(5183608-5183699)
chr4 (59-163)||(5197007-5197112)
chr4 (72-163)||(5174266-5174357)
chr4 (59-163)||(4841151-4841256)
chr4 (72-163)||(5161325-5161416)
chr4 (72-163)||(5215152-5215243)
chr4 (72-163)||(4855671-4855762)
chr4 (17-54)||(667927-667964)
chr4 (215-276)||(4848499-4848559)
chr4 (25-54)||(8847785-8847814)
chr4 (22-55)||(40976855-40976888)
chr4 (215-275)||(5199122-5199181)
[»] chr8 (5 HSPs)
chr8 (17-57)||(38657171-38657211)
chr8 (17-52)||(2268606-2268641)
chr8 (25-54)||(4435096-4435125)
chr8 (17-54)||(5064253-5064290)
chr8 (17-54)||(9907162-9907199)
[»] chr7 (6 HSPs)
chr7 (17-56)||(5222281-5222320)
chr7 (25-56)||(27954008-27954039)
chr7 (17-55)||(43364177-43364215)
chr7 (25-55)||(48455364-48455394)
chr7 (25-54)||(27950848-27950877)
chr7 (25-54)||(29865195-29865224)
[»] chr3 (7 HSPs)
chr3 (22-56)||(4506372-4506406)
chr3 (17-54)||(4501048-4501085)
chr3 (17-54)||(4644579-4644616)
chr3 (17-54)||(20628607-20628644)
chr3 (24-56)||(8049788-8049820)
chr3 (25-54)||(9331402-9331431)
chr3 (22-54)||(27900457-27900489)
[»] chr6 (2 HSPs)
chr6 (17-54)||(13105134-13105171)
chr6 (17-54)||(18765618-18765655)
[»] chr5 (4 HSPs)
chr5 (17-54)||(4694468-4694505)
chr5 (17-54)||(42729060-42729097)
chr5 (25-54)||(3413555-3413584)
chr5 (17-54)||(12919207-12919244)
[»] chr2 (1 HSPs)
chr2 (17-56)||(22599896-22599935)
[»] chr1 (3 HSPs)
chr1 (17-56)||(9315889-9315928)
chr1 (17-54)||(19329304-19329341)
chr1 (22-55)||(45620406-45620439)
[»] scaffold0012 (1 HSPs)
scaffold0012 (17-55)||(202330-202368)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 5183699 - 5183608
Alignment:
Q  72 attatgtgatagattcaaggctttaatttgttgcaggtctccaatttgagaagggatgatacctgttagcttgttgcatgataaatccaatc 163  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  5183699 attatgtgatagattcaaggctttaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatc 5183608  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 59 - 163
Target Start/End: Complemental strand, 5197112 - 5197007
Alignment:
Q  59 ggacctgacaatt-attatgtgatagattcaaggctttaatttgttgcaggtctccaatttgagaagggatgatacctgttagcttgttgcatgataaat 157  Q
    ||||||||||| | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  5197112 ggacctgacaagtgattatgtgatagattcaaggctctaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaat 5197013  T
Q  158 ccaatc 163  Q
    ||||||    
T  5197012 ccaatc 5197007  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 5174357 - 5174266
Alignment:
Q  72 attatgtgatagattcaaggctttaatttgttgcaggtctccaatttgagaagggatgatacctgttagcttgttgcatgataaatccaatc 163  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  5174357 attatgtgatagattcaaggctctaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatc 5174266  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 4841151 - 4841256
Alignment:
Q  59 ggacctgacaatt-attatgtgatagattcaaggctttaatttgttgcaggtctccaatttgagaagggatgatacctgttagcttgttgcatgataaat 157  Q
    ||||||||||| | |||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| | ||||||||  || |||||||||||||    
T  4841151 ggacctgacaagtgattatgtgatagattcaaggctctaatttgttgtaggtctccaatttgggaagggataacacctgttaaattattgcatgataaat 4841250  T
Q  158 ccaatc 163  Q
    ||||||    
T  4841251 ccaatc 4841256  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 5161416 - 5161325
Alignment:
Q  72 attatgtgatagattcaaggctttaatttgttgcaggtctccaatttgagaagggatgatacctgttagcttgttgcatgataaatccaatc 163  Q
    |||||||||||| |||||||||  || |||||||||||  |||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  5161416 attatgtgataggttcaaggctaaaacttgttgcaggtgcccaatttgagaagggatagtacctgttagcttgttgcatgataaatccaatc 5161325  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 5215243 - 5215152
Alignment:
Q  72 attatgtgatagattcaaggctttaatttgttgcaggtctccaatttgagaagggatgatacctgttagcttgttgcatgataaatccaatc 163  Q
    |||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||||||||| ||||||||| || || ||||||||||||||||    
T  5215243 attatgtgataggttcaaggctctaacttgttgaaggtgaccaatttgagaagggatgagacctgttaggttattccatgataaatccaatc 5215152  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 4855671 - 4855762
Alignment:
Q  72 attatgtgatagattcaaggctttaatttgttgcaggtctccaatttgagaagggatgatacctgttagcttgttgcatgataaatccaatc 163  Q
    |||||||||||| ||||||||| ||| | |||| ||||  ||||||||||||||||||| ||||||||| || || ||||||||||||||||    
T  4855671 attatgtgataggttcaaggctctaactggttgaaggtgaccaatttgagaagggatgacacctgttaggttattccatgataaatccaatc 4855762  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 667927 - 667964
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatca 54  Q
    ||||||||||||||||||||||||||||||||||||||    
T  667927 agacaataacaaaaatacttacttttgatactacatca 667964  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 4848499 - 4848559
Alignment:
Q  215 ctctcctaaaacattaaaacctgaatttattattggttattttggtttatataagaaaaaaa 276  Q
    |||| ||||||| ||||||||| ||||||||| |||||  ||||||||||||||||||||||    
T  4848499 ctcttctaaaacgttaaaacct-aatttattagtggttgatttggtttatataagaaaaaaa 4848559  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 8847814 - 8847785
Alignment:
Q  25 acaaaaatacttacttttgatactacatca 54  Q
    ||||||||||||||||||||||||||||||    
T  8847814 acaaaaatacttacttttgatactacatca 8847785  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 40976855 - 40976888
Alignment:
Q  22 ataacaaaaatacttacttttgatactacatcaa 55  Q
    |||||| |||||||||||||||||||||||||||    
T  40976855 ataacataaatacttacttttgatactacatcaa 40976888  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 5199181 - 5199122
Alignment:
Q  215 ctctcctaaaacattaaaacctgaatttattattggttattttggtttatataagaaaaaa 275  Q
    |||| ||||||||||| ||||| |||||||||  ||||| ||| |||||||||||||||||    
T  5199181 ctcttctaaaacattacaacct-aatttattagaggttaattttgtttatataagaaaaaa 5199122  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 38657211 - 38657171
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatcaaat 57  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  38657211 agacaataacaaaaatacttacttttaatactacatcaaat 38657171  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 2268606 - 2268641
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacat 52  Q
    |||| |||||||||||||||||||||||||||||||    
T  2268606 agacgataacaaaaatacttacttttgatactacat 2268641  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 4435125 - 4435096
Alignment:
Q  25 acaaaaatacttacttttgatactacatca 54  Q
    ||||||||||||||||||||||||||||||    
T  4435125 acaaaaatacttacttttgatactacatca 4435096  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 5064253 - 5064290
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatca 54  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  5064253 agacgataacaaaaatacttacttttgatattacatca 5064290  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 9907162 - 9907199
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatca 54  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  9907162 agacgataacaaaaatacttacttttgatacaacatca 9907199  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 5222320 - 5222281
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatcaaa 56  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  5222320 agacgataacaaaaatacttacttttgatactacatcaaa 5222281  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 56
Target Start/End: Complemental strand, 27954039 - 27954008
Alignment:
Q  25 acaaaaatacttacttttgatactacatcaaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  27954039 acaaaaatacttacttttgatactacatcaaa 27954008  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 43364215 - 43364177
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatcaa 55  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  43364215 agacgataacataaatacttacttttgatactacatcaa 43364177  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 48455394 - 48455364
Alignment:
Q  25 acaaaaatacttacttttgatactacatcaa 55  Q
    |||||||||||||||||||||||||||||||    
T  48455394 acaaaaatacttacttttgatactacatcaa 48455364  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 27950877 - 27950848
Alignment:
Q  25 acaaaaatacttacttttgatactacatca 54  Q
    ||||||||||||||||||||||||||||||    
T  27950877 acaaaaatacttacttttgatactacatca 27950848  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 29865195 - 29865224
Alignment:
Q  25 acaaaaatacttacttttgatactacatca 54  Q
    ||||||||||||||||||||||||||||||    
T  29865195 acaaaaatacttacttttgatactacatca 29865224  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 4506406 - 4506372
Alignment:
Q  22 ataacaaaaatacttacttttgatactacatcaaa 56  Q
    |||||||||||||||||||||||||||||||||||    
T  4506406 ataacaaaaatacttacttttgatactacatcaaa 4506372  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 4501085 - 4501048
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatca 54  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4501085 agacgataacaaaaatacttacttttgatactacatca 4501048  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 4644579 - 4644616
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatca 54  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4644579 agacgataacaaaaatacttacttttgatactacatca 4644616  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 20628607 - 20628644
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatca 54  Q
    |||| |||||||||||||||||||||||||||||||||    
T  20628607 agacgataacaaaaatacttacttttgatactacatca 20628644  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 8049820 - 8049788
Alignment:
Q  24 aacaaaaatacttacttttgatactacatcaaa 56  Q
    |||||||||||||||||||||||||||||||||    
T  8049820 aacaaaaatacttacttttgatactacatcaaa 8049788  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 9331402 - 9331431
Alignment:
Q  25 acaaaaatacttacttttgatactacatca 54  Q
    ||||||||||||||||||||||||||||||    
T  9331402 acaaaaatacttacttttgatactacatca 9331431  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 27900489 - 27900457
Alignment:
Q  22 ataacaaaaatacttacttttgatactacatca 54  Q
    |||||| ||||||||||||||||||||||||||    
T  27900489 ataacataaatacttacttttgatactacatca 27900457  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 13105171 - 13105134
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatca 54  Q
    |||| |||||||||||||||||||||||||||||||||    
T  13105171 agacgataacaaaaatacttacttttgatactacatca 13105134  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 18765655 - 18765618
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatca 54  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  18765655 agacgataacagaaatacttacttttgatactacatca 18765618  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 4694468 - 4694505
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatca 54  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4694468 agacgataacaaaaatacttacttttgatactacatca 4694505  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 42729097 - 42729060
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatca 54  Q
    |||| |||||||||||||||||||||||||||||||||    
T  42729097 agacgataacaaaaatacttacttttgatactacatca 42729060  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 3413555 - 3413584
Alignment:
Q  25 acaaaaatacttacttttgatactacatca 54  Q
    ||||||||||||||||||||||||||||||    
T  3413555 acaaaaatacttacttttgatactacatca 3413584  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 12919207 - 12919244
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatca 54  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  12919207 agacgataacgaaaatacttacttttgatactacatca 12919244  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 22599935 - 22599896
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatcaaa 56  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  22599935 agacgataacaaaaatacttacttttgataatacatcaaa 22599896  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 9315928 - 9315889
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatcaaa 56  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  9315928 agacgataacataaatacttacttttgatactacatcaaa 9315889  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 19329341 - 19329304
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatca 54  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  19329341 agacgatagcaaaaatacttacttttgatactacatca 19329304  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 45620406 - 45620439
Alignment:
Q  22 ataacaaaaatacttacttttgatactacatcaa 55  Q
    ||||||||||||||||||||| ||||||||||||    
T  45620406 ataacaaaaatacttacttttaatactacatcaa 45620439  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 202368 - 202330
Alignment:
Q  17 agacaataacaaaaatacttacttttgatactacatcaa 55  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  202368 agacgataacataaatacttacttttgatactacatcaa 202330  T

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