View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5426-Insertion-1 (Length: 724)
Name: NF5426-Insertion-1
Description: NF5426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5426-Insertion-1 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 657; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 8 - 724
Target Start/End: Original strand, 51454920 - 51455631
Alignment:
| Q |
8 |
cttaatgtgtcatcaatgtcagagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggagaagatattgcataccttgtttaaacaattgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51454920 |
cttaatgtgtcatcaatgtcagagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggagaagatattgcataccttgtttaaacaattgg |
51455019 |
T |
|
| Q |
108 |
tacaacttccttaacttctgttttactttgtttaacttgcttcatcctatgttttgtcagtttgctctattgttttttaatatggccttgtttgataatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
51455020 |
tacaacttccttaacttctgttttactttgtttaacttgcttcatcctatgttttgtcagtttgctctattgttctttaatatg-ccttgtttgataatt |
51455118 |
T |
|
| Q |
208 |
gggatgtagaccgaagttattgcacatattacacgtttggactttggttgatgaaatattgatcaaactatgcttttttgctgcctcttgttaaggtatc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51455119 |
gggatgtagaccgaagttattgcacatattacacgtttggactttggttgatgaaatattgatcaaactatgcttttttgctgcctcttgttaaggtatc |
51455218 |
T |
|
| Q |
308 |
ctaaactgaaagagagtgatattgccaaggcatgtcctgtgtgctgtgataattgcaattgcaaagcatgcttgcggtcttttaaactcatcgatgttag |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51455219 |
ctaaactgaaagagagtgatattgccaaggcatgtcctgtgtgctgtgataattgcaattgcaaagcatgcttgcggtcttttaaactcatcgatgttag |
51455318 |
T |
|
| Q |
408 |
tgatccacccttccacgattaactattcttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggctg |
507 |
Q |
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| T |
51455319 |
tgatccacccttccacgattaactattcttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggctg |
51455418 |
T |
|
| Q |
508 |
aaaccatcaacgaggaggaggttgagttctctgagtatctgctgaaaggacttcttccacattttaagacgggttggatgaagaacaaatgattgagaag |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |
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| T |
51455419 |
aaaccatcaacgaggaggaggttgagttctctaagtatctgctgaaaggacttcttccaca-tttaagac-ggttggatgcagaacaaatgattgagaag |
51455516 |
T |
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| Q |
608 |
gaaagagaagccaagagacgaggtattcctgtatagtcggagagaatttgtagtttcatatatttttcattttataatttgattttgggatgtggaatta |
707 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
51455517 |
gaaagagaagccaagagacgaggtattcctgtatagtcggagaaaatttgtagttttatatatttttcattttataatttgattttgggatgt-gaatta |
51455615 |
T |
|
| Q |
708 |
caggggctctcactctc |
724 |
Q |
| |
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|| |||||||||||||| |
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| T |
51455616 |
ca-gggctctcactctc |
51455631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 51496412 - 51496553
Alignment:
| Q |
12 |
atgtgtcatcaatgtcagagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggagaagatattgcataccttgtttaaacaattggtaca |
111 |
Q |
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||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| |
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| T |
51496412 |
atgtgccatcaatgtcagagaaatgacaagggcagggttgttagatgcacaaaatgcaaacggaaaagatattgcataccatgtttaaacaactggtaca |
51496511 |
T |
|
| Q |
112 |
acttccttaacttctgttttactttgtttaacttgcttcatc |
153 |
Q |
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|||| || |||| |||||||||||||||||||||||||||| |
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| T |
51496512 |
actttatttacttatgttttactttgtttaacttgcttcatc |
51496553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 51479430 - 51479553
Alignment:
| Q |
8 |
cttaatgtgtcatcaatgtcagagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggagaagatattgcataccttgtttaaacaattgg |
107 |
Q |
| |
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||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
51479430 |
cttaatgtgccatcaatgtcagagaaatgacaagggcagggttgtcagatgcacaaaatgcaaacggaaaagattttgcataccttgtttaaacaattgg |
51479529 |
T |
|
| Q |
108 |
tacaacttccttaacttctgtttt |
131 |
Q |
| |
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|||||||||| | ||||||||||| |
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| T |
51479530 |
tacaacttccatcacttctgtttt |
51479553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 329 - 632
Target Start/End: Original strand, 51479739 - 51480038
Alignment:
| Q |
329 |
ttgccaaggcatgtcctgtgtgctgtgataattgcaattgcaaagcatgcttgcggtcttttaaactcatcgatgttagtgatccacccttccacgatta |
428 |
Q |
| |
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||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| || | | ||| ||| | || || ||| ||||| | ||||| |
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| T |
51479739 |
ttgccgaggcatgtccggtgtgctgtggtaattgcaattgcaaagcatgcttgcgatcatgtgcacttatcaaagtcagatctcccccctt-aaagatta |
51479837 |
T |
|
| Q |
429 |
actattcttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggctgaaaccatcaacgaggaggagg |
528 |
Q |
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| T |
51479838 |
actattcatgtgatttgt-tgtattctacatttgaaatgtgatcatctggttcactacaggaaattaaaacgaagacagaaaccaacaacaaccatgagt |
51479936 |
T |
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| Q |
529 |
ttgagttctctgagtatctgctgaaaggacttcttccacattttaagacgggttggatgaagaacaaatgattgagaaggaaagagaagccaagagacga |
628 |
Q |
| |
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| ||| |||| ||||| || |||||| |||||||||| | |||||||| | |||||||||||||||||| | |||||||| | |||||| ||||||| | |
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| T |
51479937 |
tcgagctctccaagtatatggtgaaagaacttcttccata-tttaagac-gattggatgaagaacaaatggtcgagaaggagatagaagcaaagagacaa |
51480034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 30207602 - 30207548
Alignment:
| Q |
328 |
attgccaaggcatgtcctgtgtgctgtgataattgcaattgcaaagcatgcttgc |
382 |
Q |
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| T |
30207602 |
attgccaaggcatgtccagggtgctgtggtaattgcaattgcaaagcatgcttgc |
30207548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 51496757 - 51496805
Alignment:
| Q |
335 |
aggcatgtcctgtgtgctgtgataattgcaattgcaaagcatgcttgcg |
383 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||||| |||||||| |
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| T |
51496757 |
aggcatgtccagtgtgctgtggtaattgcaattgcaaagcttgcttgcg |
51496805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 30208464 - 30208328
Alignment:
| Q |
18 |
catcaatgtcagagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggagaagatattgcataccttgtttaaacaattg----gtacaac |
113 |
Q |
| |
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| T |
30208464 |
catcaatgtaaaagaaatgacaagggcagggttgtgaaatgcacgaaatgcgaccggaagaaattttgcatactttgtattaaccgttggtacgtacaac |
30208365 |
T |
|
| Q |
114 |
ttccttaacttctgttttactttgtttaacttgcttc |
150 |
Q |
| |
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||||||||||| ||||||| | |||||||| |||||| |
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| T |
30208364 |
ttccttaacttatgttttattctgtttaacgtgcttc |
30208328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 308 - 711
Target Start/End: Original strand, 43160142 - 43160544
Alignment:
| Q |
308 |
ctaaactgaaagagagtgatattgccaaggcatgtcctgtgtgctgtgataattgcaattgcaaagcatgcttgcggtcttttaaactcatcgatgttag |
407 |
Q |
| |
|
||||| ||||||| || ||| ||||| |||||||||||||||| ||| ||||||||||||| ||||| ||||| || |||| ||||||||| |||| | |
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| T |
43160142 |
ctaaattgaaagaaagcgatgttgccgaggcatgtcctgtgtgttgtaataattgcaattgtaaagcgtgcttacgatcttctaaactcattaatgtcgg |
43160241 |
T |
|
| Q |
408 |
tgatccacccttccacga--ttaactattcttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggc |
505 |
Q |
| |
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|||||| |||||| | | |||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||| |
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| T |
43160242 |
tgatcctcccttcttctacattaactattcttatgatttttctgtattgtatatttgaaatgtatccatctggtttactataggaaatgaagcataaggt |
43160341 |
T |
|
| Q |
506 |
tgaaaccatcaacgaggaggaggttgagttctctgagtatctgctgaaaggacttcttccacattttaagacgggttggatgaagaacaaatgattgaga |
605 |
Q |
| |
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||||||| || | | ||||| ||||||||||| || || | ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |
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| T |
43160342 |
cgaaaccaacagcaatgaggaagttgagttctcgaagaatattctgaaaggacttcttccacattt-aaga-gggttggatgaagaacaaatgatttaga |
43160439 |
T |
|
| Q |
606 |
aggaaagagaagccaagagacgaggtattcctgtatagtcggagagaatttgtagtttcatatatttttcattttataatttgattttgggatgtggaat |
705 |
Q |
| |
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|||||||||||||||||| || |||||||||| ||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
43160440 |
aggaaagagaagccaagatacaaggtattcctttatagtcagagatcatttttagttttatatatttttcattttataatttgattttgggatgt-gaat |
43160538 |
T |
|
| Q |
706 |
tacagg |
711 |
Q |
| |
|
|||||| |
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|
| T |
43160539 |
tacagg |
43160544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 27395544 - 27395621
Alignment:
| Q |
8 |
cttaatgtgtcatcaatgtcagagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggagaagatattg |
85 |
Q |
| |
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||||||||||||||||||||| ||||| || | |||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
27395544 |
cttaatgtgtcatcaatgtcaaagaaatgacagtggcagggttgtcagatgcaccaaatgcaaacggaaaagatattg |
27395621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 382
Target Start/End: Original strand, 4299358 - 4299405
Alignment:
| Q |
335 |
aggcatgtcctgtgtgctgtgataattgcaattgcaaagcatgcttgc |
382 |
Q |
| |
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|||||||||| |||||||||| ||| ||||||||||||||||||||| |
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| T |
4299358 |
aggcatgtccggtgtgctgtggtaacagcaattgcaaagcatgcttgc |
4299405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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