View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5426-Insertion-2 (Length: 458)
Name: NF5426-Insertion-2
Description: NF5426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5426-Insertion-2 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 7 - 457
Target Start/End: Complemental strand, 21541631 - 21541182
Alignment:
| Q |
7 |
atgtacatggttctaaccaattttaccaagccaaactcagctacaaaaatcttgaaagctcaacaacattttcaaatattgcttgtgaggtttttgaagg |
106 |
Q |
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| T |
21541631 |
atgtacatg-ttctaaccaattttaccaagccaaactcagctacaaaaatcttgaaagctcaacaacattttccaatattgcttgtgaggtttttgaagg |
21541533 |
T |
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| Q |
107 |
tctattgaaacatgtcacactttccgatcaaaacgaaaatcaaggtaatgaaccgaaatttggtgatgttcttcatgtacctcttagatgttcatgtcca |
206 |
Q |
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| T |
21541532 |
tctattgaaacatgtcacactttccgatcaaaacgaaaatcaaggtaatgaaccgaaattcggtgatgttattcatgtacctcttagatgttcatgtcca |
21541433 |
T |
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| Q |
207 |
aaaaattactctagtattatgaaaggtgtaataaagtactttgttacataccctcttatacaaggagataattttgataaattgagtaaaaaatttggta |
306 |
Q |
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| T |
21541432 |
aaaaattactctagtattatgaaaggtgtaataaagtactttgttacataccctcttatacaaggagataattttgataaattgagtaaaaaatttggta |
21541333 |
T |
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| Q |
307 |
tctcacttgatgatttcttggaagcaaatcaattgcaacccttgtcatcagtttttcctcagacggttgttttgattccaataagagatgcaaatggtcc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21541332 |
tctcacttgatgatttcttggaagcaaatcaattgcaacccttgtcatcagtttttcctcagacggttgttttgattccaataagagatgcaaatggtcc |
21541233 |
T |
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| Q |
407 |
aatcaaaatattcgacattccagattctccttcgccgcctcctaattttct |
457 |
Q |
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| T |
21541232 |
aatcaaaatattcgacattccagattctccttcgccacctcctaattttct |
21541182 |
T |
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Target: scaffold0219 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 9481 - 9545
Alignment:
| Q |
7 |
atgtacatggttctaaccaattttaccaagccaaactcagctacaaaaatcttgaaagctcaacaa |
72 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
9481 |
atgtacatg-ttctaaccaattttaccaagccaaactcagctacaaagttcttgaaagcacaacaa |
9545 |
T |
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