View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5426-Insertion-3 (Length: 383)

Name: NF5426-Insertion-3
Description: NF5426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5426-Insertion-3
NF5426-Insertion-3
[»] chr7 (2 HSPs)
chr7 (154-383)||(19135775-19136007)
chr7 (154-383)||(20735174-20735406)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 154 - 383
Target Start/End: Original strand, 19135775 - 19136007
Alignment:
Q  154 gaagaaaaatgtgagggcggcctgaatatcggcacgagattggccagagagtgtaatatttatatatcataataaataaggaacaacacttgtatatgta 253  Q
    ||||||||||||||| ||||| ||||||| || | ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19135775 gaagaaaaatgtgagtgcggcgtgaatatagggaagagattggtaagagagtgtaatatttatatatcataataaataaggaacaacacttgtatatgta 19135874  T
Q  254 ttgatttgtgatgaagaaaaggcag-tttggaaacttttcttctttctttcttgtctataacaaccaacaaa-aaccatgttacccaccacnnnnnnngt 351  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||    
T  19135875 ttgatttgtgatgaagaaaaagcagctttagaaacttttcttctttctttcttgtctataacaaccaacaaacaaccatgttacccaccactttttttgt 19135974  T
Q  352 ggtgcaatccctacaataac-gctaggaagatt 383  Q
     |||||||| |||||||||| ||||||||||||    
T  19135975 tgtgcaatcactacaataacagctaggaagatt 19136007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 154 - 383
Target Start/End: Original strand, 20735174 - 20735406
Alignment:
Q  154 gaagaaaaatgtgagggcggcctgaatatcggcacgagattggccagagagtgtaatatttatatatcataataaataaggaacaacacttgtatatgta 253  Q
    ||||||||||||||| ||||| ||||||| || | ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20735174 gaagaaaaatgtgagtgcggcgtgaatatagggaagagattggtaagagagtgtaatatttatatatcataataaataaggaacaacacttgtatatgta 20735273  T
Q  254 ttgatttgtgatgaagaaaaggcag-tttggaaacttttcttctttctttcttgtctataacaaccaacaaa-aaccatgttacccaccacnnnnnnngt 351  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||    
T  20735274 ttgatttgtgatgaagaaaaagcagctttagaaacttttcttctttctttcttgtctataacaaccaacaaacaaccatgttacccaccactttttttgt 20735373  T
Q  352 ggtgcaatccctacaataac-gctaggaagatt 383  Q
     |||||||| |||||||||| ||||||||||||    
T  20735374 tgtgcaatcactacaataacagctaggaagatt 20735406  T

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