View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5426-Insertion-6 (Length: 615)

Name: NF5426-Insertion-6
Description: NF5426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5426-Insertion-6
NF5426-Insertion-6
[»] chr6 (11 HSPs)
chr6 (197-429)||(23071720-23071948)
chr6 (25-201)||(23072081-23072256)
chr6 (427-466)||(22564564-22564603)
chr6 (427-483)||(21036956-21037012)
chr6 (427-466)||(1636676-1636715)
chr6 (427-482)||(14641659-14641714)
chr6 (427-466)||(21687144-21687183)
chr6 (431-482)||(21760426-21760477)
chr6 (425-460)||(24320649-24320684)
chr6 (427-461)||(10505194-10505228)
chr6 (429-466)||(9848206-9848243)
[»] chr8 (5 HSPs)
chr8 (425-482)||(24583184-24583241)
chr8 (425-482)||(26888513-26888570)
chr8 (426-466)||(15058518-15058558)
chr8 (427-482)||(13313286-13313341)
chr8 (427-457)||(28318558-28318588)
[»] chr3 (11 HSPs)
chr3 (425-482)||(34276450-34276507)
chr3 (427-482)||(19912607-19912662)
chr3 (427-483)||(12771217-12771273)
chr3 (427-466)||(16242209-16242248)
chr3 (427-462)||(25530746-25530781)
chr3 (427-481)||(20891660-20891714)
chr3 (427-466)||(12517333-12517372)
chr3 (427-466)||(18535813-18535852)
chr3 (427-465)||(22470417-22470455)
chr3 (428-460)||(8765723-8765755)
chr3 (428-460)||(8770613-8770645)
[»] chr5 (10 HSPs)
chr5 (427-482)||(29987984-29988039)
chr5 (427-466)||(34488900-34488939)
chr5 (425-481)||(24162024-24162080)
chr5 (427-466)||(15691311-15691350)
chr5 (425-460)||(25400751-25400786)
chr5 (427-466)||(28254934-28254973)
chr5 (427-462)||(29989017-29989052)
chr5 (427-461)||(20102908-20102942)
chr5 (427-480)||(24263765-24263818)
chr5 (425-478)||(26348473-26348526)
[»] chr2 (6 HSPs)
chr2 (425-482)||(28918215-28918272)
chr2 (427-483)||(17351004-17351060)
chr2 (427-475)||(27540280-27540328)
chr2 (427-482)||(27907537-27907592)
chr2 (427-460)||(23010058-23010091)
chr2 (305-378)||(29987721-29987793)
[»] chr7 (13 HSPs)
chr7 (428-464)||(17887746-17887782)
chr7 (427-462)||(2505890-2505925)
chr7 (427-482)||(18986759-18986814)
chr7 (427-482)||(19001387-19001442)
chr7 (427-466)||(21707352-21707391)
chr7 (427-481)||(4450699-4450753)
chr7 (427-482)||(5236881-5236936)
chr7 (427-482)||(8977485-8977540)
chr7 (431-466)||(14195791-14195826)
chr7 (427-482)||(26249090-26249145)
chr7 (427-465)||(10332448-10332486)
chr7 (427-455)||(1767430-1767458)
chr7 (427-483)||(8052444-8052499)
[»] chr4 (9 HSPs)
chr4 (427-482)||(8968086-8968141)
chr4 (427-466)||(25025149-25025188)
chr4 (427-481)||(9849722-9849776)
chr4 (427-465)||(12836085-12836123)
chr4 (427-464)||(19335240-19335277)
chr4 (427-464)||(19666964-19667001)
chr4 (427-482)||(7583819-7583874)
chr4 (427-482)||(15166495-15166550)
chr4 (427-460)||(8928328-8928361)
[»] chr1 (13 HSPs)
chr1 (427-466)||(11845236-11845275)
chr1 (427-481)||(26647372-26647426)
chr1 (427-464)||(21536921-21536958)
chr1 (426-482)||(16180744-16180800)
chr1 (427-482)||(729163-729218)
chr1 (427-466)||(14235299-14235338)
chr1 (427-482)||(15542323-15542378)
chr1 (427-466)||(21663105-21663144)
chr1 (427-466)||(22621836-22621875)
chr1 (427-466)||(27973346-27973385)
chr1 (427-481)||(24901237-24901291)
chr1 (429-462)||(17016831-17016864)
chr1 (427-459)||(24464664-24464696)
[»] scaffold0386 (1 HSPs)
scaffold0386 (427-466)||(4887-4926)
[»] scaffold0032 (1 HSPs)
scaffold0032 (427-466)||(92843-92882)
[»] scaffold0059 (1 HSPs)
scaffold0059 (425-462)||(63961-63998)
[»] scaffold0555 (1 HSPs)
scaffold0555 (427-483)||(6479-6535)


Alignment Details
Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 197 - 429
Target Start/End: Complemental strand, 23071948 - 23071720
Alignment:
Q  197 gcatgcattcaaggacaactgattcttgagcaatggtcatcaaacttaagctctacttaaaggacctaatttgtttgaagaaggttattgactatgacta 296  Q
    |||||||||||||||||| |||||||| ||||| ||||||||| || |||||||| |||||||||||| | ||| |||||   |||||||||||||| ||    
T  23071948 gcatgcattcaaggacaagtgattcttcagcaacggtcatcaagct-aagctctatttaaaggacctagtctgtatgaag---gttattgactatgatta 23071853  T
Q  297 catttgttcaaattcacataaatacaaacatagtctaacgtgtacatatattgttgtaatcttatacacacttttttattgtataaatcttgtatagaaa 396  Q
    ||| ||| |||| ||||||| ||| | ||||||||||||||||||||||| | ||||||||||||||| || ||||||| ||||| ||||||||||||||    
T  23071852 catatgtgcaaactcacatacatatacacatagtctaacgtgtacatatactattgtaatcttatacatacatttttatagtatatatcttgtatagaaa 23071753  T
Q  397 tagttaagaaaaatcgtaatagatacactttta 429  Q
    |||| || |||||||||||||||||||||||||    
T  23071752 tagtcaataaaaatcgtaatagatacactttta 23071720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 23072256 - 23072081
Alignment:
Q  25 tcaaagttatgcactttcgttcaaaactctaggtgcttgataggctctatgtcatagataaagagaaatattttatcaagattaaggccaactttgttaa 124  Q
    |||||| | ||||||||||||||||||||| | | ||| ||  ||||||||||||||||||||| |||| |||||||||||||||||  || | | ||||    
T  23072256 tcaaagctctgcactttcgttcaaaactctggat-ctttatgagctctatgtcatagataaagacaaatgttttatcaagattaaggtaaattctcttaa 23072158  T
Q  125 gtcaacattgtagttataacctcttgattgagttcctccatacgagcattgactcaagaattcattaatgatgcatg 201  Q
    || ||||||||| ||||||||||||||||||||||||| | |||  ||||||||||||||||| |||| ||||||||    
T  23072157 gtgaacattgtatttataacctcttgattgagttcctctacacggacattgactcaagaattccttaaggatgcatg 23072081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 466
Target Start/End: Original strand, 22564564 - 22564603
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  22564564 ttacgttattcttagcatgtttttcagtcatttttagtag 22564603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 483
Target Start/End: Complemental strand, 21037012 - 21036956
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaat 483  Q
    |||||| ||||||| ||| ||||||||| ||||||||||| | ||||||||||||||    
T  21037012 ttacgtcattcttatcatgtttttcagttatttttagtaggttttagcaacaaaaat 21036956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 466
Target Start/End: Complemental strand, 1636715 - 1636676
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  1636715 ttacgttattcttagcatgtttttcagttatttttagtag 1636676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 482
Target Start/End: Complemental strand, 14641714 - 14641659
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||||||||||| ||||||||| ||||| ||||| | |||||| ||||||    
T  14641714 ttacgttattcttagcatgtttttcagttattttcagtaggttttagcagcaaaaa 14641659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 466
Target Start/End: Original strand, 21687144 - 21687183
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  21687144 ttacgttattcttagcatgtttttcagtcaattttagtag 21687183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 482
Target Start/End: Original strand, 21760426 - 21760477
Alignment:
Q  431 gttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||||||||||||||||||||||| | ||||  |||||| ||||||    
T  21760426 gttattcttagcatatttttcagtcattttcaatagaatttagcagcaaaaa 21760477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Complemental strand, 24320684 - 24320649
Alignment:
Q  425 ttttacgttattcttagcatatttttcagtcatttt 460  Q
    |||||||||||| |||||||||||||||||||||||    
T  24320684 ttttacgttatttttagcatatttttcagtcatttt 24320649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 461
Target Start/End: Complemental strand, 10505228 - 10505194
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcattttt 461  Q
    ||||||||| |||||||||||||||||||||||||    
T  10505228 ttacgttatacttagcatatttttcagtcattttt 10505194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 9848243 - 9848206
Alignment:
Q  429 acgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  9848243 acgttattcttaacatgtttttcagtcatttttagtag 9848206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 24583184 - 24583241
Alignment:
Q  425 ttttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| |||||| ||||||    
T  24583184 ttttatgttattcttagcatgtttttcagtcatttttagtagattttagcagcaaaaa 24583241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 482
Target Start/End: Complemental strand, 26888570 - 26888513
Alignment:
Q  425 ttttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||||| ||||||||||||||| | ||||||||||| | |||||||||||||    
T  26888570 ttttacgttatttttagcatatttttcatttatttttagtaggttttagcaacaaaaa 26888513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 466
Target Start/End: Original strand, 15058518 - 15058558
Alignment:
Q  426 tttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  15058518 tttacgttattcttagcatgttttttagtcatttttagtag 15058558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 482
Target Start/End: Original strand, 13313286 - 13313341
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||||||||||| ||||||||||||||| | ||| | |||||| ||||||    
T  13313286 ttacgttattcttagcatgtttttcagtcattttcaataggttttagcagcaaaaa 13313341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 457
Target Start/End: Complemental strand, 28318588 - 28318558
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcat 457  Q
    |||||||||||||||||||||||||||||||    
T  28318588 ttacgttattcttagcatatttttcagtcat 28318558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 34276450 - 34276507
Alignment:
Q  425 ttttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||||||||||||||||||||||||||||| ||||| | |||||| ||||||    
T  34276450 ttttacgttattcttagcatatttttcagtcattttcagtaggttttagcagcaaaaa 34276507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 482
Target Start/End: Complemental strand, 19912662 - 19912607
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||||||||||||||||||||||||||| ||||| | |||||| ||||||    
T  19912662 ttacgttattcttagcatatttttcagtcattttcagtaggttttagcagcaaaaa 19912607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 483
Target Start/End: Original strand, 12771217 - 12771273
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaat 483  Q
    |||||||||||||||||| ||||||||||||||| |||| || |||||| |||||||    
T  12771217 ttacgttattcttagcatgtttttcagtcattttcagtatattttagcagcaaaaat 12771273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 466
Target Start/End: Original strand, 16242209 - 16242248
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  16242209 ttacgttattcttagcatatttttcactcatttttagtag 16242248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 462
Target Start/End: Original strand, 25530746 - 25530781
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcattttta 462  Q
    ||||||||||||||||||||||||||||||||||||    
T  25530746 ttacgttattcttagcatatttttcagtcattttta 25530781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 20891660 - 20891714
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaa 481  Q
    ||||||||||||||||||||||||||||| |||| ||||| | ||| ||||||||    
T  20891660 ttacgttattcttagcatatttttcagtcgttttcagtaggttttaccaacaaaa 20891714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 466
Target Start/End: Complemental strand, 12517372 - 12517333
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  12517372 ttacgttattcttagcatctttttcagtcattttcagtag 12517333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 466
Target Start/End: Complemental strand, 18535852 - 18535813
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  18535852 ttacgttattcttagcatgtttttcagtcaattttagtag 18535813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 22470417 - 22470455
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagta 465  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  22470417 ttacgttattcttagcatgtttttcagtcattttcagta 22470455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 460
Target Start/End: Complemental strand, 8765755 - 8765723
Alignment:
Q  428 tacgttattcttagcatatttttcagtcatttt 460  Q
    ||||||||||||||||| |||||||||||||||    
T  8765755 tacgttattcttagcatgtttttcagtcatttt 8765723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 460
Target Start/End: Complemental strand, 8770645 - 8770613
Alignment:
Q  428 tacgttattcttagcatatttttcagtcatttt 460  Q
    ||||||||||||||||| |||||||||||||||    
T  8770645 tacgttattcttagcatgtttttcagtcatttt 8770613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 482
Target Start/End: Complemental strand, 29988039 - 29987984
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||    
T  29988039 ttacgttatttttagcatgtttttcagtcatttttagtagattttagcagcaaaaa 29987984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 466
Target Start/End: Complemental strand, 34488939 - 34488900
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  34488939 ttacgttattcttagcatgtttttcagtcatttttagtag 34488900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 24162024 - 24162080
Alignment:
Q  425 ttttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaa 481  Q
    |||||||||||||||||||| ||||||||||||||| | ||||| ||| || |||||    
T  24162024 ttttacgttattcttagcatgtttttcagtcattttcaatagattttaccagcaaaa 24162080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 466
Target Start/End: Complemental strand, 15691350 - 15691311
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  15691350 ttacgttattcttagcatattttttagtcattttcagtag 15691311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 25400751 - 25400786
Alignment:
Q  425 ttttacgttattcttagcatatttttcagtcatttt 460  Q
    |||||||||||||||||||| |||||||||||||||    
T  25400751 ttttacgttattcttagcatgtttttcagtcatttt 25400786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 466
Target Start/End: Complemental strand, 28254973 - 28254934
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  28254973 ttacgttattcttaacatatttttcagtcattttcagtag 28254934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 462
Target Start/End: Original strand, 29989017 - 29989052
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcattttta 462  Q
    |||||||||||||||||||||||||||| |||||||    
T  29989017 ttacgttattcttagcatatttttcagtaattttta 29989052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 461
Target Start/End: Original strand, 20102908 - 20102942
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcattttt 461  Q
    |||||||||| ||||||||||||||||||||||||    
T  20102908 ttacgttatttttagcatatttttcagtcattttt 20102942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 480
Target Start/End: Original strand, 24263765 - 24263818
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaa 480  Q
    |||||||||||||||||| ||||||||||  ||||||||| | ||| |||||||    
T  24263765 ttacgttattcttagcatgtttttcagtctattttagtaggttttaccaacaaa 24263818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 26348526 - 26348473
Alignment:
Q  425 ttttacgttattcttagcatatttttcagtcatttttagtagatgttagcaaca 478  Q
    ||||||||||||||||| || ||||||||||||||  ||||||| ||| |||||    
T  26348526 ttttacgttattcttagtatgtttttcagtcatttccagtagattttaccaaca 26348473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 482
Target Start/End: Complemental strand, 28918272 - 28918215
Alignment:
Q  425 ttttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||||||||||||| ||||||||||||||| ||||| | ||||| |||||||    
T  28918272 ttttacgttattcttagcatgtttttcagtcattttcagtaggttttagctacaaaaa 28918215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 483
Target Start/End: Complemental strand, 17351060 - 17351004
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaat 483  Q
    |||||||||||||| ||||||||||||| ||||| ||||| | ||||||||||||||    
T  17351060 ttacgttattcttaacatatttttcagttattttcagtaggttttagcaacaaaaat 17351004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 27540280 - 27540328
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagca 475  Q
    |||||||| ||||||||||||||||||||||||| ||||| | ||||||    
T  27540280 ttacgttactcttagcatatttttcagtcattttcagtaggttttagca 27540328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 482
Target Start/End: Original strand, 27907537 - 27907592
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||| ||||||||||||| ||||||||||||||| ||||  | |||||||||||||    
T  27907537 ttacattattcttagcatgtttttcagtcattttcagtaagttttagcaacaaaaa 27907592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Original strand, 23010058 - 23010091
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttt 460  Q
    |||||||||||||||||| |||||||||||||||    
T  23010058 ttacgttattcttagcatgtttttcagtcatttt 23010091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 29987721 - 29987793
Alignment:
Q  305 caaattcacataaatacaaacatagtctaacgtgtacatatattgttgtaatcttatacacacttttttattgt 378  Q
    |||||||||||| ||||||||| |||||||| ||| |||||| | |||||||  |||||| |||| ||||||||    
T  29987721 caaattcacatacatacaaaca-agtctaacatgttcatatactattgtaattatatacatacttctttattgt 29987793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 464
Target Start/End: Original strand, 17887746 - 17887782
Alignment:
Q  428 tacgttattcttagcatatttttcagtcatttttagt 464  Q
    |||||||||||||||||||||||||||||||||||||    
T  17887746 tacgttattcttagcatatttttcagtcatttttagt 17887782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 462
Target Start/End: Complemental strand, 2505925 - 2505890
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcattttta 462  Q
    ||||||||||||||||||||||||||||||||||||    
T  2505925 ttacgttattcttagcatatttttcagtcattttta 2505890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 482
Target Start/End: Original strand, 18986759 - 18986814
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||||||||||| ||||||||||| ||| ||||||| |||||| ||||||    
T  18986759 ttacgttattcttagcatgtttttcagtcaatttcagtagattttagcagcaaaaa 18986814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 482
Target Start/End: Original strand, 19001387 - 19001442
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||||||||||| ||||||||||| ||| ||||||| |||||| ||||||    
T  19001387 ttacgttattcttagcatgtttttcagtcaatttcagtagattttagcagcaaaaa 19001442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 466
Target Start/End: Original strand, 21707352 - 21707391
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  21707352 ttacgttattcttagcatatttttcaatcatttttagtag 21707391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 481
Target Start/End: Complemental strand, 4450753 - 4450699
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaa 481  Q
    |||||||||||||||||| |||| |||||||||| ||||| | ||||||||||||    
T  4450753 ttacgttattcttagcatgttttccagtcattttcagtaggttttagcaacaaaa 4450699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 482
Target Start/End: Original strand, 5236881 - 5236936
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||||||||||| ||||||||| ||||| ||||| | |||||| ||||||    
T  5236881 ttacgttattcttagcatgtttttcagttattttcagtaggttttagcagcaaaaa 5236936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 482
Target Start/End: Original strand, 8977485 - 8977540
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||||||||||| ||||||| ||||||| ||||| | |||||| ||||||    
T  8977485 ttacgttattcttagcatctttttcaatcattttcagtaggttttagcagcaaaaa 8977540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 466
Target Start/End: Complemental strand, 14195826 - 14195791
Alignment:
Q  431 gttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||| |||||||||||||||||||||    
T  14195826 gttattcttagcatgtttttcagtcatttttagtag 14195791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 482
Target Start/End: Original strand, 26249090 - 26249145
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    ||||||||||| |||||| ||||||||||||||| ||||| | |||||| ||||||    
T  26249090 ttacgttattcatagcatgtttttcagtcattttcagtaggttttagcagcaaaaa 26249145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 465
Target Start/End: Complemental strand, 10332486 - 10332448
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagta 465  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  10332486 ttacgttattcttagcatgtttttcagtcattttcagta 10332448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 455
Target Start/End: Complemental strand, 1767458 - 1767430
Alignment:
Q  427 ttacgttattcttagcatatttttcagtc 455  Q
    |||||||||||||||||||||||||||||    
T  1767458 ttacgttattcttagcatatttttcagtc 1767430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 483
Target Start/End: Original strand, 8052444 - 8052499
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaat 483  Q
    |||||||||||||||||| |||| |||||||||| ||||| | |||||| |||||||    
T  8052444 ttacgttattcttagcatgtttt-cagtcattttcagtaggttttagcagcaaaaat 8052499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 482
Target Start/End: Original strand, 8968086 - 8968141
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||||||||||| ||||||||||||||| ||||| | |||||| ||||||    
T  8968086 ttacgttattcttagcatgtttttcagtcattttaagtaggttttagcagcaaaaa 8968141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 466
Target Start/End: Complemental strand, 25025188 - 25025149
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  25025188 ttacgttattcttagcatgtttttcagtcatttttagtag 25025149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 9849722 - 9849776
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaa 481  Q
    ||||||||||||||| || ||||||||||||||||||||| | ||| ||||||||    
T  9849722 ttacgttattcttagtatgtttttcagtcatttttagtaggttttaccaacaaaa 9849776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 12836085 - 12836123
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagta 465  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  12836085 ttacgttattcttagcatgtttttcagtcatttttagta 12836123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 427 - 464
Target Start/End: Original strand, 19335240 - 19335277
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagt 464  Q
    |||||||||||||||||||||||| |||||||||||||    
T  19335240 ttacgttattcttagcatattttttagtcatttttagt 19335277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 427 - 464
Target Start/End: Original strand, 19666964 - 19667001
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagt 464  Q
    |||||||||||||||||||||||||||||| |||||||    
T  19666964 ttacgttattcttagcatatttttcagtcacttttagt 19667001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 482
Target Start/End: Complemental strand, 7583874 - 7583819
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||||||||||| ||||||| ||||||| ||||| | |||||| ||||||    
T  7583874 ttacgttattcttagcatctttttcaatcattttcagtaggttttagcagcaaaaa 7583819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 482
Target Start/End: Complemental strand, 15166550 - 15166495
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||| ||||||||||||| ||||||||||||||| ||||| | |||||| ||||||    
T  15166550 ttacattattcttagcatgtttttcagtcattttcagtaggttttagcagcaaaaa 15166495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Original strand, 8928328 - 8928361
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttt 460  Q
    |||||||||| |||||||||||||||||||||||    
T  8928328 ttacgttatttttagcatatttttcagtcatttt 8928361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 466
Target Start/End: Original strand, 11845236 - 11845275
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  11845236 ttacgttattcttagcatatttttcagttatttttagtag 11845275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 26647372 - 26647426
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaa 481  Q
    ||||||||||||||||||||||||||||| |||| ||||| | ||| ||||||||    
T  26647372 ttacgttattcttagcatatttttcagtctttttcagtaggttttaccaacaaaa 26647426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 427 - 464
Target Start/End: Original strand, 21536921 - 21536958
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagt 464  Q
    |||||||||| |||||||||||||||||||||||||||    
T  21536921 ttacgttatttttagcatatttttcagtcatttttagt 21536958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 16180800 - 16180744
Alignment:
Q  426 tttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||  |||||||||||||    
T  16180800 tttacattattcttagcatgtttttcagttattttcagtagagtttagcaacaaaaa 16180744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 482
Target Start/End: Complemental strand, 729218 - 729163
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    ||||||||||||||||||  |||||||||||||| ||||| | |||||| ||||||    
T  729218 ttacgttattcttagcatgcttttcagtcattttcagtaggttttagcagcaaaaa 729163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 466
Target Start/End: Original strand, 14235299 - 14235338
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  14235299 ttacgttactcttagcatgtttttcagtcatttttagtag 14235338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 482
Target Start/End: Original strand, 15542323 - 15542378
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaa 482  Q
    |||||||||||||| ||| ||||||||||||||| ||||| | |||||| ||||||    
T  15542323 ttacgttattcttaacatgtttttcagtcattttcagtaggttttagcagcaaaaa 15542378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 466
Target Start/End: Original strand, 21663105 - 21663144
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  21663105 ttacgttattcttagcatgtttttcagtcattttcagtag 21663144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 466
Target Start/End: Complemental strand, 22621875 - 22621836
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  22621875 ttacgtaattcttagcatgtttttcagtcatttttagtag 22621836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 466
Target Start/End: Complemental strand, 27973385 - 27973346
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  27973385 ttacgttattcttagcatgtttttcagtcattttcagtag 27973346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 481
Target Start/End: Complemental strand, 24901291 - 24901237
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaa 481  Q
    |||||||||| ||||||||||||||| ||||||| ||||||| ||| || |||||    
T  24901291 ttacgttatttttagcatatttttcaatcattttcagtagattttaccagcaaaa 24901237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 462
Target Start/End: Original strand, 17016831 - 17016864
Alignment:
Q  429 acgttattcttagcatatttttcagtcattttta 462  Q
    |||||||||||||||||||||||||| |||||||    
T  17016831 acgttattcttagcatatttttcagttattttta 17016864  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 459
Target Start/End: Complemental strand, 24464696 - 24464664
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcattt 459  Q
    |||||||||||||||||| ||||||||||||||    
T  24464696 ttacgttattcttagcatgtttttcagtcattt 24464664  T

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Target: scaffold0386 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 466
Target Start/End: Original strand, 4887 - 4926
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  4887 ttacgttattcttagcatgtttttcagtcaattttagtag 4926  T

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Target: scaffold0032 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 466
Target Start/End: Original strand, 92843 - 92882
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtag 466  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  92843 ttacgttattcttagcatgtttttcagttatttttagtag 92882  T

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Target: scaffold0059 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 63961 - 63998
Alignment:
Q  425 ttttacgttattcttagcatatttttcagtcattttta 462  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  63961 ttttacgctatttttagcatatttttcagtcattttta 63998  T

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Target: scaffold0555 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 483
Target Start/End: Complemental strand, 6535 - 6479
Alignment:
Q  427 ttacgttattcttagcatatttttcagtcatttttagtagatgttagcaacaaaaat 483  Q
    |||||||||||||||||| ||||||||| ||||| | |||   ||||||||||||||    
T  6535 ttacgttattcttagcatgtttttcagttattttcaataggatttagcaacaaaaat 6479  T

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