View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5426_high_1 (Length: 427)
Name: NF5426_high_1
Description: NF5426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5426_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 409
Target Start/End: Complemental strand, 18642676 - 18642278
Alignment:
| Q |
11 |
ttattctcacaaagtagttgagaaaatatcttattccatcttatggaactcactctttatcttttgttgtttctatatcaatgaattttcatgttggaga |
110 |
Q |
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| T |
18642676 |
ttattctcacaaagtagttgagaaaatatcttattccatcttatggaactcactctttatcttttgttgtttctatatcaatgaattttcatgttggaga |
18642577 |
T |
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| Q |
111 |
tcttggagcctgttaggtttgaggaaatgttttttgattgcatatcttgnnnnnnnaaaaacaaaaatttcatattattttcactctgttcctgtttcta |
210 |
Q |
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| T |
18642576 |
tcttggagcctgttaggtttgaggaaatgttttttgattgcatatcttgtttttttaaaaacaaaaatttcatattattttcactctgttcctgtttcta |
18642477 |
T |
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| Q |
211 |
aggatttggttaagaagcaacataaactatagaattcatataagaatctcatgagttgtttgttatgttacaattgagagcattggacacgttaaattga |
310 |
Q |
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| T |
18642476 |
aggatttggttaagaagcaacataaactatagaattcatataagaatctcatgagttgtttgttatgttacaattgagagcattggacacgttaaattga |
18642377 |
T |
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| Q |
311 |
ttaaaaaatcttttcatacagtgcaaatatttatttggtaaccacatacttctataacaaatccaacacattatatagtgatagctatgcgtaaatctt |
409 |
Q |
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| T |
18642376 |
ttaaaaaatcttttcatacagtgcaaatatttatttggtaaccacatacttctataacaaatccaacacattatatagtgatagctatgcgtaaatctt |
18642278 |
T |
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