View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5426_high_11 (Length: 235)

Name: NF5426_high_11
Description: NF5426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5426_high_11
NF5426_high_11
[»] chr2 (15 HSPs)
chr2 (1-225)||(30135788-30136012)
chr2 (1-230)||(30079278-30079507)
chr2 (1-230)||(30020872-30021101)
chr2 (14-225)||(30102555-30102766)
chr2 (1-230)||(30039594-30039823)
chr2 (1-230)||(30109072-30109301)
chr2 (1-230)||(30233732-30233961)
chr2 (31-190)||(30169117-30169276)
chr2 (86-222)||(30221625-30221761)
chr2 (31-219)||(30788157-30788345)
chr2 (83-219)||(30009604-30009740)
chr2 (86-222)||(30277410-30277546)
chr2 (83-219)||(30066101-30066237)
chr2 (84-221)||(30249811-30249948)
chr2 (84-222)||(30186738-30186876)
[»] chr1 (1 HSPs)
chr1 (89-217)||(30271474-30271602)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 30135788 - 30136012
Alignment:
Q  1 tccttcttctgttttctttttaaacttgaaatccaaggcttcagcaatttgacgtcgaattgtttcaagatttggtaaacttgttatagtagccataaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30135788 tccttcttctgttttctttttaaacttgaaatccaaggcttcagcaatttgacgtcgaattgtttcaagatttggtaaacttgttatagtagccataaca 30135887  T
Q  101 atagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccatacaccccaacaatgaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30135888 atagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccatacaccccaacaatgaaga 30135987  T
Q  201 tgctaggatccttcaatgccagtat 225  Q
    |||||||||||||||||||||||||    
T  30135988 tgctaggatccttcaatgccagtat 30136012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 30079507 - 30079278
Alignment:
Q  1 tccttcttctgttttctttttaaacttgaaatccaaggcttcagcaatttgacgtcgaattgtttcaagatttggtaaacttgttatagtagccataaca 100  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30079507 tccttcttctgtcttcttattaaacttgaaatccaaggcttcagcaatttggcgtcgaattgtttcaagatttggtaaacttgttatagtagccataaca 30079408  T
Q  101 atagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccatacaccccaacaatgaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30079407 atagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccatacaccccaacaatgaaga 30079308  T
Q  201 tgctaggatccttcaatgccagtattatct 230  Q
    ||||||||||||||||||||||||| ||||    
T  30079307 tgctaggatccttcaatgccagtataatct 30079278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 30021101 - 30020872
Alignment:
Q  1 tccttcttctgttttctttttaaacttgaaatccaaggcttcagcaatttgacgtcgaattgtttcaagatttggtaaacttgttatagtagccataaca 100  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30021101 tccttcttctgtattcttattaaacttgaaatccaaggcttcagcaatttggcgtcgaattgtttcaagatttggtaaacttgttatagtagccataaca 30021002  T
Q  101 atagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccatacaccccaacaatgaaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30021001 atagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacctattccatacaccccaacaatgaaga 30020902  T
Q  201 tgctaggatccttcaatgccagtattatct 230  Q
    |||||||||||||||||| |||||| ||||    
T  30020901 tgctaggatccttcaatgtcagtataatct 30020872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 30102555 - 30102766
Alignment:
Q  14 ttctttttaaacttgaaatccaaggcttcagcaatttgacgtcgaattgtttcaagatttggtaaacttgttatagtagccataacaatagtaccaaatg 113  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30102555 ttcttattaaacttgaaatccaaggcttcagcaatttggcgtcgaattgtttcaagatttggtaaacttgttatagtagccataacaatagtaccaaatg 30102654  T
Q  114 acccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccatacaccccaacaatgaagatgctaggatcctt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30102655 acccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccaccaattccatacaccccaacaatgaagatgctaggatcctt 30102754  T
Q  214 caatgccagtat 225  Q
    ||||| ||||||    
T  30102755 caatgacagtat 30102766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 30039594 - 30039823
Alignment:
Q  1 tccttcttctgttttctttttaaacttgaaatccaaggcttcagcaatttgacgtcgaattgtttcaagatttggtaaacttgttatagtagccataaca 100  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||    
T  30039594 tccttcttctgtcttcttattaaacttgaaatccaaggcttcagcaatttggcatcgaattgtttcaagatttggtgaacttgttatagtagccataaca 30039693  T
Q  101 atagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccatacaccccaacaatgaaga 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30039694 atagtactaaatgacccatcattcttcgctttccaagataactcttccatcagtgttgtcttccccacaccacccattccatacaccccaacaatgaata 30039793  T
Q  201 tgctaggatccttcaatgccagtattatct 230  Q
    ||||||||||||||||||||||||| ||||    
T  30039794 tgctaggatccttcaatgccagtataatct 30039823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 30109072 - 30109301
Alignment:
Q  1 tccttcttctgttttctttttaaacttgaaatccaaggcttcagcaatttgacgtcgaattgtttcaagatttggtaaacttgttatagtagccataaca 100  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||    
T  30109072 tccttcttctgtcttcttattaaacttgaaatccaaggcttcagcaatttggcatcgaattgtttcaagatttggtgaacttgttatagtagccataaca 30109171  T
Q  101 atagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccatacaccccaacaatgaaga 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30109172 atagtactaaatgacccatcattcttcgctttccaagataactcttccatcagtgttgtcttccccacaccacccattccatacaccccaacaatgaata 30109271  T
Q  201 tgctaggatccttcaatgccagtattatct 230  Q
    ||||||||||||||||||||||||| ||||    
T  30109272 tgctaggatccttcaatgccagtataatct 30109301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 30233732 - 30233961
Alignment:
Q  1 tccttcttctgttttctttttaaacttgaaatccaaggcttcagcaatttgacgtcgaattgtttcaagatttggtaaacttgttatagtagccataaca 100  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||    
T  30233732 tccttcttctgtcttcttattaaacttgaaatccaaggcttcagcaatttggcatcgaattgtttcaagatttggtgaacttgttatagtagccataaca 30233831  T
Q  101 atagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccatacaccccaacaatgaaga 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30233832 atagtacaaaatgacccatcattcttcgctttccaagataactcttccatcagtgttgtcttccccacaccacccattccatacaccccaacaatgaata 30233931  T
Q  201 tgctaggatccttcaatgccagtattatct 230  Q
    ||||||||||||||||||||||||| ||||    
T  30233932 tgctaggatccttcaatgccagtataatct 30233961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 30169276 - 30169117
Alignment:
Q  31 atccaaggcttcagcaatttgacgtcgaattgtttcaagatttggtaaacttgttatagtagccataacaatagtaccaaatgacccatcattcttcgct 130  Q
    ||||||||| ||||||||||| | | ||||  |||||| ||||||  |||| ||||| || |||||||| | || ||||||||||||||| ||||  |||    
T  30169276 atccaaggcatcagcaatttggccttgaatattttcaacatttggagaactagttatggttgccataactacagcaccaaatgacccatctttctctgct 30169177  T
Q  131 ttccaagataactctttcatcagtgttgtcttccccacaccacccattccatacacccca 190  Q
    | ||||| |||||||||||  |||||||||||||||||||||||||| || |||||||||    
T  30169176 tgccaagctaactctttcactagtgttgtcttccccacaccacccatcccgtacacccca 30169117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 30221761 - 30221625
Alignment:
Q  86 atagtagccataacaatagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccataca 185  Q
    |||||||| ||||| | || || |||||| ||||||||||  |||| ||||| ||||||||||| |||||||||||| ||||| |||||||| |||||||    
T  30221761 atagtagctataactacagaactaaatgatccatcattctcagcttgccaagctaactctttcaccagtgttgtcttgcccactccacccatcccataca 30221662  T
Q  186 ccccaacaatgaagatgctaggatccttcaatgccag 222  Q
    || |||  ||||||||| |||||| ||||||||||||    
T  30221661 ccgcaatcatgaagatgttaggattcttcaatgccag 30221625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 30788345 - 30788157
Alignment:
Q  31 atccaaggcttcagcaatttgacgtcgaattgtttcaagatttggtaaacttgttatagtagccataacaatagtaccaaatgacccatcattcttcgct 130  Q
    ||||||||| ||||||||||||| | ||||| |||| | || |||  | |  | ||||||||||||||| | || || | ||||||||||||| |  |||    
T  30788345 atccaaggcatcagcaatttgaccttgaattttttccacatctggagacccggatatagtagccataactacagcactatatgacccatcattttcagct 30788246  T
Q  131 ttccaagataactctttcatcagtgttgtcttccccacaccacccattccatacaccccaacaatgaagatgctaggatccttcaatgc 219  Q
    | ||||| ||||||||||| |||||||||||| || |  |||||||| ||||||||||||| |||||||||| |||||| |||||||||    
T  30788245 tgccaagctaactctttcaccagtgttgtcttgcctattccacccatcccatacaccccaataatgaagatgttaggattcttcaatgc 30788157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 30009740 - 30009604
Alignment:
Q  83 gttatagtagccataacaatagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccat 182  Q
    ||||||||||||||||| | || || ||||||| |||||||||  |||| ||||| ||| |||||||  | ||| || |||||||| |||||||| ||||    
T  30009740 gttatagtagccataactacagcactaaatgactcatcattctcagcttgccaagctaattctttcactaatgtcgttttccccactccacccatcccat 30009641  T
Q  183 acaccccaacaatgaagatgctaggatccttcaatgc 219  Q
    |||| |||| |||||||||| ||||||||||||||||    
T  30009640 acacaccaataatgaagatgttaggatccttcaatgc 30009604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 30277546 - 30277410
Alignment:
Q  86 atagtagccataacaatagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccataca 185  Q
    ||||||||||| || | || || ||| |||||||||||||  |||| ||||| |||||||||||  ||||||||||||||||| |||||||| ||||| |    
T  30277546 atagtagccatgactacagcactaaacgacccatcattctcagcttgccaagctaactctttcactagtgttgtcttccccactccacccatcccataga 30277447  T
Q  186 ccccaacaatgaagatgctaggatccttcaatgccag 222  Q
    ||| || || ||||||| |||||||||||||| ||||    
T  30277446 ccctaataacgaagatgttaggatccttcaataccag 30277410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 30066237 - 30066101
Alignment:
Q  83 gttatagtagccataacaatagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccat 182  Q
    ||||||||||||||||| | || || ||||||| |||||||||  |||| ||||| ||| |||||||  | ||| || |||||||| |||||||| ||||    
T  30066237 gttatagtagccataactacagcactaaatgactcatcattctcagcttgccaagctaattctttcactaatgtcgttttccccactccacccatcccat 30066138  T
Q  183 acaccccaacaatgaagatgctaggatccttcaatgc 219  Q
    |||| ||||  ||||||||| ||| ||||||||||||    
T  30066137 acacaccaattatgaagatgttagtatccttcaatgc 30066101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 30249948 - 30249811
Alignment:
Q  84 ttatagtagccataacaatagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccata 183  Q
    ||||||||||||| || | || || | | ||||||||||| |  |||| ||||  |||||||||||  ||||||||||| ||||| ||| |||| |||||    
T  30249948 ttatagtagccattactacagcactataggacccatcattttgagcttgccaaagtaactctttcactagtgttgtcttgcccactccagccatcccata 30249849  T
Q  184 caccccaacaatgaagatgctaggatccttcaatgcca 221  Q
    |||||||| |||||||||| ||||||  ||||||||||    
T  30249848 caccccaataatgaagatgttaggattattcaatgcca 30249811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 30186738 - 30186876
Alignment:
Q  84 ttatagtagccataacaatagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccata 183  Q
    |||||||||||| |||||  | |  |||||| ||| ||||||  |||||| ||| || ||||| ||  ||||| || || ||||| |||||||| |||||    
T  30186738 ttatagtagccaaaacaaccgcattaaatgagccaccattctctgctttcgaagctagctcttccactagtgtagttttgcccactccacccatcccata 30186837  T
Q  184 caccccaacaatgaagatgctaggatccttcaatgccag 222  Q
     || |||| |||||||| | |||||||||||||||||||    
T  30186838 aacaccaataatgaagaagttaggatccttcaatgccag 30186876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 30271602 - 30271474
Alignment:
Q  89 gtagccataacaatagtaccaaatgacccatcattcttcgctttccaagataactctttcatcagtgttgtcttccccacaccacccattccatacaccc 188  Q
    ||||||||||| | || || |||||||||||||||||  |||||||| | ||||||||||| |||||||||||| ||||| |||||||| |||| |||||    
T  30271602 gtagccataactacagaactaaatgacccatcattctcagctttccatgctaactctttcaccagtgttgtcttgcccactccacccatcccatgcaccc 30271503  T
Q  189 caacaatgaagatgctaggatccttcaat 217  Q
    |||  || |||||| |||||| |||||||    
T  30271502 caatcataaagatgttaggattcttcaat 30271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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