View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5426_high_16 (Length: 201)
Name: NF5426_high_16
Description: NF5426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5426_high_16 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 2e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 1281242 - 1281084
Alignment:
| Q |
9 |
gatgaaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaag |
108 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1281242 |
gatgaaggaaagaatatgagagaaaaggccatggaattgaagaaggcggcggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaag |
1281143 |
T |
|
| Q |
109 |
tgattaaggaagtgttgcttaaacaaaattagatagaatgatattgttctctgcaatgc |
167 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1281142 |
tgattaaggaaatgttgcttaaacaaaattagatagaatgatattgttttctgcaatgc |
1281084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 44785401 - 44785435
Alignment:
| Q |
167 |
cctccggttccatttataagagaattttgggtcaa |
201 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
44785401 |
cctccggttctatttataagagaattttgggtcaa |
44785435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 1674328 - 1674196
Alignment:
| Q |
35 |
ggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaa |
134 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
1674328 |
ggccatggaattgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgcttaaacaa |
1674229 |
T |
|
| Q |
135 |
aattagatagaatgatattgttctctgcaatgc |
167 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
1674228 |
aattagatagaatgatattgttttctgcaatgc |
1674196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 20863883 - 20863975
Alignment:
| Q |
45 |
ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat |
137 |
Q |
| |
|
||||||||| ||| |||||| |||| ||||| | ||| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20863883 |
ttgaagaagaaggcagaggaggacacaagaccggaaggtggttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaaaat |
20863975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 16686334 - 16686399
Alignment:
| Q |
72 |
agaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat |
137 |
Q |
| |
|
||||| ||||||||||||||||||||||| || |||||||||| ||| || ||||||||||||||| |
|
|
| T |
16686334 |
agacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat |
16686399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 28000129 - 28000261
Alignment:
| Q |
35 |
ggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaa |
134 |
Q |
| |
|
||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
28000129 |
ggccatggagttgaagaaaaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgtttaaacaa |
28000228 |
T |
|
| Q |
135 |
aattagatagaatgatattgttctctgcaatgc |
167 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| |
|
|
| T |
28000229 |
aattagatattatgatattgttttctgcaatgc |
28000261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 24103073 - 24103002
Alignment:
| Q |
63 |
gagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaa |
134 |
Q |
| |
|
|||||||| ||| | ||||||| ||||||||||||||| |||||||| |||||||| || ||||||||||| |
|
|
| T |
24103073 |
gagaacacaagatctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa |
24103002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 6e-36; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 4617152 - 4617020
Alignment:
| Q |
7 |
gagatgaaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaa |
106 |
Q |
| |
|
||||| |||||||||| |||| ||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4617152 |
gagataaaggaaagaaaatgaagcaaaaggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttgaacaa |
4617053 |
T |
|
| Q |
107 |
agtgattaaggaagtgttgcttaaacaaaatta |
139 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| |
|
|
| T |
4617052 |
agttattaaggatgtgttgcttaaacaaaatta |
4617020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 4480817 - 4480688
Alignment:
| Q |
13 |
aaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgat |
112 |
Q |
| |
|
|||||||||| |||| ||| ||||||||| ||||||||| ||| |||||| |||| ||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4480817 |
aaggaaagaagatgaagcaaaaggccatggagttgaagaagatggcagaggaggacacaagacctggtggttgttcatacatgaacttggacaaagtgat |
4480718 |
T |
|
| Q |
113 |
taaggaagtgttgcttaaacaaaattagat |
142 |
Q |
| |
|
|||||| || |||||||||||||||||||| |
|
|
| T |
4480717 |
taaggaggtcttgcttaaacaaaattagat |
4480688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 4516451 - 4516316
Alignment:
| Q |
7 |
gagatgaaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaa |
106 |
Q |
| |
|
||||| |||||||||| ||||| ||| ||||||||||||||||||| ||| |||||| |||| |||||||||||||||||||| ||||||| || || |
|
|
| T |
4516451 |
gagataaaggaaagaagatgaggcaaaaggccatggaattgaagaagaaggcagaggaggacacaagaccaggtggttgttcatatgtgaacttggaaaa |
4516352 |
T |
|
| Q |
107 |
agtgattaaggaagtgttgcttaaacaaaattagat |
142 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
4516351 |
agtgattaaggaggtgctgctcaaacaaaattagat |
4516316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 4601919 - 4601783
Alignment:
| Q |
7 |
gagatgaaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaa |
106 |
Q |
| |
|
||||| |||| ||||| ||||| ||| ||||||||| ||||||||| ||| |||||| |||||||| ||||||||||||||||| |||| | ||||| |
|
|
| T |
4601919 |
gagataaaggcaagaagatgaggcaaaaggccatggagttgaagaagatggcaaaggagagcactagactaggtggttgttcatacaagaacctggacaa |
4601820 |
T |
|
| Q |
107 |
agtgattaaggaagtgttgcttaaacaaaattagata |
143 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
4601819 |
agttattaaggaggtgttgcttaaacaaaattagata |
4601783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 4504405 - 4504534
Alignment:
| Q |
13 |
aaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgat |
112 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||| ||||||||| ||| |||||| |||| |||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4504405 |
aaggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagaggaggacacaagacttggtggttgttcatacatgaacttggacaaagtgat |
4504504 |
T |
|
| Q |
113 |
taaggaagtgttgcttaaacaaaattagat |
142 |
Q |
| |
|
|||||| || ||||||||| || ||||||| |
|
|
| T |
4504505 |
taaggacgtcttgcttaaaaaatattagat |
4504534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 4560636 - 4560506
Alignment:
| Q |
7 |
gagatgaaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaa |
106 |
Q |
| |
|
||||| |||||||||| ||||| ||| ||||||||| ||||||| |||||||| | |||| ||||| || |||||||||||||||||||| || || |
|
|
| T |
4560636 |
gagataaaggaaagaagatgaggcaaaaggccatggagctgaagaaaaaggcggaggtgtacacgagacctggaggttgttcatacatgaacttggagaa |
4560537 |
T |
|
| Q |
107 |
agtgattaaggaagtgttgcttaaacaaaat |
137 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
|
|
| T |
4560536 |
agtgattaaggaggtgttgcttaaacaaaat |
4560506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 3171865 - 3171736
Alignment:
| Q |
13 |
aaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgat |
112 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||||||||| ||| |||||| | || ||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
3171865 |
aaggaaagaagatgaggcaaagggccatggagttgaagaagaaggcagaggaggatacaagatttggtggttgttcatacatgaacttggataaagtgat |
3171766 |
T |
|
| Q |
113 |
taaggaagtgttgcttaaacaaaattagat |
142 |
Q |
| |
|
|||||| || |||||||||||| ||||||| |
|
|
| T |
3171765 |
taaggaggtcttgcttaaacaatattagat |
3171736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 4571063 - 4570972
Alignment:
| Q |
46 |
tgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat |
137 |
Q |
| |
|
|||||||| |||||||||| |||| ||||| ||||||||||||||||||||||| || |||||||||||||| || ||||||||| ||||| |
|
|
| T |
4571063 |
tgaagaagaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaat |
4570972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 4505922 - 4505852
Alignment:
| Q |
72 |
agaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattagat |
142 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
4505922 |
agacctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaaaattagat |
4505852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 4557206 - 4557125
Alignment:
| Q |
56 |
ggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat |
137 |
Q |
| |
|
|||||||||| |||| ||||| |||||||||||||||||||| || || |||||||||||||| || ||||||||||||||| |
|
|
| T |
4557206 |
ggcggaggaggacacgagacctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaat |
4557125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 4493014 - 4492950
Alignment:
| Q |
78 |
ggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattagat |
142 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
4493014 |
ggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagat |
4492950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 4592355 - 4592231
Alignment:
| Q |
13 |
aaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgat |
112 |
Q |
| |
|
|||||||||| ||||| ||| ||| || || ||||||||| ||| ||||||||||| ||||| || ||||||||||| |||||||| |||||| |||| |
|
|
| T |
4592355 |
aaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcagaggagaacacgagacctggaggttgttcatatatgaacttggacaaattgat |
4592256 |
T |
|
| Q |
113 |
taaggaagtgttgcttaaacaaaat |
137 |
Q |
| |
|
||||| |||||||||||| ||||| |
|
|
| T |
4592255 |
caaggaggtgttgcttaaataaaat |
4592231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 4626073 - 4625946
Alignment:
| Q |
15 |
ggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgatta |
114 |
Q |
| |
|
|||||||| ||||| ||| ||||||||| ||||||||| ||| |||||||||| ||| || |||||||||||||||||||| | || ||| |||||| |
|
|
| T |
4626073 |
ggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacattagtcccggtggttgttcatacatgaatatggataaactgatta |
4625974 |
T |
|
| Q |
115 |
aggaagtgttgcttaaacaaaattagat |
142 |
Q |
| |
|
| || || |||||||||||| ||||||| |
|
|
| T |
4625973 |
atgatgtcttgcttaaacaatattagat |
4625946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 4585758 - 4585636
Alignment:
| Q |
15 |
ggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgatta |
114 |
Q |
| |
|
|||||||| ||||| ||| ||| || || ||||||||| |||||||||| |||| ||||| || |||||||||||||| ||||| || |||||||||| |
|
|
| T |
4585758 |
ggaaagaagatgaggcaaaaggcaatcgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacataaacttggaaaaagtgatta |
4585659 |
T |
|
| Q |
115 |
aggaagtgttgcttaaacaaaat |
137 |
Q |
| |
|
|||| || ||||||||| ||||| |
|
|
| T |
4585658 |
aggaggttttgcttaaataaaat |
4585636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 4299795 - 4299876
Alignment:
| Q |
60 |
gaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattaga |
141 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||| || ||||||||||| |||||| |
|
|
| T |
4299795 |
gaggagaacactaatccaggtggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaacaatattaga |
4299876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 4613726 - 4613850
Alignment:
| Q |
13 |
aaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgat |
112 |
Q |
| |
|
|||||||||| ||||| ||| ||| || || ||||||||| ||| |||||| |||| |||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
4613726 |
aaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcagaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgat |
4613825 |
T |
|
| Q |
113 |
taaggaagtgttgcttaaacaaaat |
137 |
Q |
| |
|
|| || ||| |||| ||||||||| |
|
|
| T |
4613826 |
caatgaggtgctgctgaaacaaaat |
4613850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 4461245 - 4461118
Alignment:
| Q |
15 |
ggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgatta |
114 |
Q |
| |
|
|||||||| ||||| ||| || ||||||||| |||||| || ||||||| | || ||||| || ||| |||||||| |||||| |||||||| |||| |
|
|
| T |
4461245 |
ggaaagaagatgaggcaaaaggtcatggaattcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcatta |
4461146 |
T |
|
| Q |
115 |
aggaagtgttgcttaaacaaaattagat |
142 |
Q |
| |
|
|||| || |||||||||||||||||||| |
|
|
| T |
4461145 |
aggatgtcttgcttaaacaaaattagat |
4461118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 4563789 - 4563711
Alignment:
| Q |
59 |
ggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat |
137 |
Q |
| |
|
|||||| ||||| ||| | || |||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
4563789 |
ggaggaaaacacgagagctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgcttaaacaaaat |
4563711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 4574438 - 4574308
Alignment:
| Q |
7 |
gagatgaaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaa |
106 |
Q |
| |
|
||||| |||||||||| ||||| ||| ||||| || |||||||| || ||||| | |||| ||||| || ||||||||||||| ||||| || || |
|
|
| T |
4574438 |
gagataaaggaaagaagatgaggcaaaaagccattgagctgaagaagaaggtggaggtggacacgagacctggaggttgttcatacacaaacttggagaa |
4574339 |
T |
|
| Q |
107 |
agtgattaaggaagtgttgcttaaacaaaat |
137 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
|
|
| T |
4574338 |
agtgattaaggaggtgttgcttaaacaaaat |
4574308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 4606958 - 4607023
Alignment:
| Q |
72 |
agaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat |
137 |
Q |
| |
|
||||||||||||| ||||||||||||||| || |||||||||||| | || ||||||||||||||| |
|
|
| T |
4606958 |
agaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaat |
4607023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 4579524 - 4579432
Alignment:
| Q |
45 |
ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat |
137 |
Q |
| |
|
||||||||| || ||||||| |||| ||||| || || ||||||||||||||||| || |||||||||||||| ||||| || ||||||||| |
|
|
| T |
4579524 |
ttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttactcaaacaaaat |
4579432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 4267224 - 4267295
Alignment:
| Q |
63 |
gagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaa |
134 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||||||||||| |||||||| |||||||| || ||||||||||| |
|
|
| T |
4267224 |
gagaacacaagacctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa |
4267295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 4622272 - 4622145
Alignment:
| Q |
7 |
gagatgaaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaa |
106 |
Q |
| |
|
||||| |||||||||| |||||| ||| ||||||||| |||||| || ||| || |||| || || || |||||||||||||||| ||||| ||||| |
|
|
| T |
4622272 |
gagataaaggaaagaagatgagacaaaaggccatggagttgaaggagaaggcagatgagacgaccagccctggtggttgttcatacaacaacttggacaa |
4622173 |
T |
|
| Q |
107 |
agtgattaaggaagtgttgcttaaacaa |
134 |
Q |
| |
|
||| |||||||| || ||||||||||| |
|
|
| T |
4622172 |
agttattaaggaggtcatgcttaaacaa |
4622145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 4490363 - 4490481
Alignment:
| Q |
13 |
aaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgat |
112 |
Q |
| |
|
|||||||||| ||||| ||| ||| | ||| ||||||||| ||| | |||| |||| |||| |||||| |||||||||||||||| ||||||||||| |
|
|
| T |
4490363 |
aaggaaagaagatgaggcaaaaggcgacggagttgaagaagaaggcagcggaggacacgagactcggtggtagttcatacatgaacttggacaaagtgat |
4490462 |
T |
|
| Q |
113 |
taaggaagtgttgcttaaa |
131 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
4490463 |
taaggatgtcatgcttaaa |
4490481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 4515202 - 4515256
Alignment:
| Q |
86 |
ttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattag |
140 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
4515202 |
ttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaaaattag |
4515256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 4598301 - 4598175
Alignment:
| Q |
7 |
gagatgaaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaa |
106 |
Q |
| |
|
||||| |||||||||| ||||| ||| | | || || ||||||| | |||||||||| | || |||| || |||||||||||||||||||| || || |
|
|
| T |
4598301 |
gagataaaggaaagaaaatgaggcaaaagacaattgatttgaagatgaaggcggaggaggaaacgagacttggaggttgttcatacatgaacttagagaa |
4598202 |
T |
|
| Q |
107 |
agtgattaaggaagtgttgcttaaaca |
133 |
Q |
| |
|
|||||||||||| ||||| |||||||| |
|
|
| T |
4598201 |
agtgattaaggaggtgtttcttaaaca |
4598175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 4392094 - 4392160
Alignment:
| Q |
73 |
gaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaatta |
139 |
Q |
| |
|
|||| ||||||| ||||| ||||||||| |||||| |||||||||| || ||||||||||| ||||| |
|
|
| T |
4392094 |
gacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaaacataatta |
4392160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 4256620 - 4256741
Alignment:
| Q |
13 |
aaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgat |
112 |
Q |
| |
|
|||||||||| ||||| ||| || |||||||||||||||| | | ||| ||||||| || |||| |||| ||||| |||||||| |||||||| || |
|
|
| T |
4256620 |
aaggaaagaagatgaggcaaaaggtcatggaattgaagaagaagacagagaagaacaccagcccagctggtcattcattgatgaacttggacaaagttat |
4256719 |
T |
|
| Q |
113 |
taaggaagtgttgcttaaacaa |
134 |
Q |
| |
|
|||||| || ||||||||||| |
|
|
| T |
4256720 |
taaggaggtcatgcttaaacaa |
4256741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 4568123 - 4568072
Alignment:
| Q |
67 |
acactagaccaggtggttgttcatacatgaacttcgacaaagtgattaagga |
118 |
Q |
| |
|
|||| ||||| |||| || ||||||||||||||| ||||||||||||||||| |
|
|
| T |
4568123 |
acacaagacctggtgattcttcatacatgaacttggacaaagtgattaagga |
4568072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 4260156 - 4260265
Alignment:
| Q |
7 |
gagatgaaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaa |
106 |
Q |
| |
|
|||| ||||||||||| ||||| ||| || |||||| ||||||| | ||| ||||||||||| || ||| ||||| ||||| |||||||| ||||| |
|
|
| T |
4260156 |
gagaagaaggaaagaagatgaggcaaaaggtcatggagttgaagaggaaggcagaggagaacaccagtccatctggttattcattgatgaacttggacaa |
4260255 |
T |
|
| Q |
107 |
agtgattaag |
116 |
Q |
| |
|
||| |||||| |
|
|
| T |
4260256 |
agttattaag |
4260265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 3727 - 3848
Alignment:
| Q |
13 |
aaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgat |
112 |
Q |
| |
|
|||||||||| ||||| ||| |||| |||| || |||||| ||| |||||||||||||||||||||||| |||||||||||||| | |||||||| || |
|
|
| T |
3727 |
aaggaaagaagatgaggcaaaaggccgtggagttaaagaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttat |
3826 |
T |
|
| Q |
113 |
taaggaagtgttgcttaaacaa |
134 |
Q |
| |
|
|||||| || |||||||||||| |
|
|
| T |
3827 |
taaggaggttttgcttaaacaa |
3848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 4688 - 4815
Alignment:
| Q |
7 |
gagatgaaggaaagaatatgagagaaagggccatggaattgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaa |
106 |
Q |
| |
|
||||| |||||| ||| ||||| ||| ||||||||| ||||||||| ||| ||||||||||| || | ||||| ||||||||||||||||| ||||| |
|
|
| T |
4688 |
gagataaaggaatgaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacaccagttctggtggctgttcatacatgaacttggacaa |
4787 |
T |
|
| Q |
107 |
agtgattaaggaagtgttgcttaaacaa |
134 |
Q |
| |
|
|||||||||||| || ||||||||||| |
|
|
| T |
4788 |
agtgattaaggaggtcatgcttaaacaa |
4815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 3086479 - 3086426
Alignment:
| Q |
78 |
ggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaa |
131 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| || ||||||||| |
|
|
| T |
3086479 |
ggtggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaa |
3086426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 31319404 - 31319438
Alignment:
| Q |
167 |
cctccggttccatttataagagaattttgggtcaa |
201 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
31319404 |
cctccggttctatttataagagaattttgggtcaa |
31319438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 7579435 - 7579401
Alignment:
| Q |
167 |
cctccggttccatttataagagaattttgggtcaa |
201 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
7579435 |
cctccggttctatttataagagaattttgggtcaa |
7579401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 34042821 - 34042787
Alignment:
| Q |
167 |
cctccggttccatttataagagaattttgggtcaa |
201 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
34042821 |
cctccggttctatttataagagaattttgggtcaa |
34042787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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