View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5426_high_8 (Length: 250)
Name: NF5426_high_8
Description: NF5426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5426_high_8 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 31275892 - 31275656
Alignment:
| Q |
14 |
gaagatgaatgcatcctatcatccatcttaggataatccttcaatggatgtccatagtcttcaaacacttgctgcaaagtctgcctcgacctacatgccg |
113 |
Q |
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| T |
31275892 |
gaagatgaatgcatcctatcatccatcttaggataatccttcaatggatgtccatagtcttcaaacacttgctccaaagtctgcctcgacctacacgctg |
31275793 |
T |
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| Q |
114 |
cgcgaaggtaattcatcacgtaacgcgtaatcggatgaagaccaccacccggaacaccggccttagccggatcccttcgaatcaaattctccaactccat |
213 |
Q |
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| T |
31275792 |
cgcgaaggtaattcatcacgtaacgcgtaatcggatgaagaccaccacccggaacacctgccttagccggatcccttcgaatcaaattctccaactccat |
31275693 |
T |
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| Q |
214 |
aaaaatgcccctaattgcttcccccaatctcttccat |
250 |
Q |
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| T |
31275692 |
aaaaatgcccctaattgcttcccccaatctcttccat |
31275656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 249
Target Start/End: Complemental strand, 31286060 - 31285928
Alignment:
| Q |
117 |
gaaggtaattcatcacgtaacgcgtaatcggatgaagaccaccacccggaacaccggccttagccggatcccttcgaatcaaattctccaactccataaa |
216 |
Q |
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| T |
31286060 |
gaaggtagttcatcacgtaatgggtaatcgggtgaagtccaacagcgggaactgctgcctttgccggatcttggcgaatcaaattcgccaactccttgaa |
31285961 |
T |
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| Q |
217 |
aatgcccctaattgcttcccccaatctcttcca |
249 |
Q |
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| T |
31285960 |
aatgcctccaactgcttcccccaatctcttcca |
31285928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 31318715 - 31318658
Alignment:
| Q |
193 |
aatcaaattctccaactccataaaaatgcccctaattgcttcccccaatctcttccat |
250 |
Q |
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| T |
31318715 |
aatcaaatactccaactccttaaatatgtccctaattgttttccccaatctcttccat |
31318658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 31278313 - 31278368
Alignment:
| Q |
194 |
atcaaattctccaactccataaaaatgcccctaattgcttcccccaatctcttcca |
249 |
Q |
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| T |
31278313 |
atcagattctccaactccatgaaaatgcctatgattgcttcacccaatctcttcca |
31278368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 26909235 - 26909084
Alignment:
| Q |
98 |
ctcgacctacatgccgcgcgaaggtaattcatcacgtaacgcgtaatcggatgaagaccaccacccggaacaccggccttagccggatcccttcgaatca |
197 |
Q |
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| T |
26909235 |
ctcgacctacatgcagcacgaagatagttcatcacgtagcgagtaatcggatgaagacctccgccgggaaccactgccttcaccggatcacgactaatca |
26909136 |
T |
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| Q |
198 |
aattctccaactccataaaaatgcccctaattgcttcccccaatctcttcca |
249 |
Q |
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| T |
26909135 |
aattctccaattccataaaagttcctcttatcgcttcacccaacctcttcca |
26909084 |
T |
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