View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5426_low_13 (Length: 215)
Name: NF5426_low_13
Description: NF5426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5426_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 45043619 - 45043419
Alignment:
| Q |
1 |
aatatcaatgtcgtgtgcactcaaaatctcatgattgcacgcagttagccatatactagactaagtttgatattttagatttaaaaaataaaatcactat |
100 |
Q |
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| T |
45043619 |
aatatcaatgtcatgtgcagtcaaaatctcatgactgcacgcagttagccatatactagattaagttcggtattttagaattaaaaaataaaatcactat |
45043520 |
T |
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| Q |
101 |
taaaatttaaatcgtttgatttcaattggataattcatatgtcacaacaattcaattcgtagaatcaatgatttgtcgatttttattttagtgatatata |
200 |
Q |
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| T |
45043519 |
taaaatttgaatcgtttgatttcaattggacaattcatatgtgacaacaatccaattcgtagaatcaatgatttctcgatttttattttagtgatatata |
45043420 |
T |
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| Q |
201 |
t |
201 |
Q |
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| |
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| T |
45043419 |
t |
45043419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 46175725 - 46175519
Alignment:
| Q |
1 |
aatatcaatgtcgtgtgcactcaaaatctcatgattgcacgcagttagccatatactagactaagtttgatattttagatttaaaaaataaaatcac--- |
97 |
Q |
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||||||||||| |||||| ||| ||||| | || ||||| || |||| |||||| |||||||| || |||||||||||||||||||||||||| | |
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| T |
46175725 |
aatatcaatgttgtgtgcggtcacaatcttaggactgcacacacttagtcatatattagactaaattcgatattttagatttaaaaaataaaataaaatc |
46175626 |
T |
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| Q |
98 |
--tattaaaatttaaatcgtttgatttcaattggataattcatatgtcacaacaat-tcaattcgtagaatcaatgatttgtcgatttttattttagtga |
194 |
Q |
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||||||||||| |||||| | |||| ||||||| |||||| || | |||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46175625 |
tatattaaaatttgaatcgtctaattttaattggacaattcagatataacaacaatctaaattcgtagaatcaatgatttgtcgatttttattttagtga |
46175526 |
T |
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| Q |
195 |
tatatat |
201 |
Q |
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||||||| |
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| T |
46175525 |
tatatat |
46175519 |
T |
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