View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5426_low_4 (Length: 317)
Name: NF5426_low_4
Description: NF5426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5426_low_4 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 44474447 - 44474153
Alignment:
| Q |
23 |
tccccacctagagatataaaaactccaaatccatgtacaatgccagttaaccaagaaccaataaaaacatcgccaatatcccaactgacaatccctcttc |
122 |
Q |
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|||||| |||||||| |||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |
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| T |
44474447 |
tccccatctagagatgtaaaaactccaaatccatgtacaaggccatttgaccaagaaccaataaaaacatcgccaatagcccaagtgaaaatccctcttc |
44474348 |
T |
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| Q |
123 |
catctggtagatcttttttccaatttccaatgtagatagttccatccttccaagtttgggtgccattaccatgacggcaatcccgagagaagtcaccctc |
222 |
Q |
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| T |
44474347 |
catctggtgtatcttttttccaatttccaatgtagatagttccatccttcaaagttagggtgccattaccatgacggaaattcccagagaagtcgccctc |
44474248 |
T |
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| Q |
223 |
atactttgctcctaatggttgtgtgaatagtcgtcctttccctgtcatctctccatcaacaaaatcaccctcatatattgatccatctgaccatg |
317 |
Q |
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| T |
44474247 |
atactttgatgctgatggctgtaccaacagtcgtcctttccctgccacctttccatcaacaaaatcaccctcatatattgatccatctgaccatg |
44474153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 307
Target Start/End: Original strand, 38453871 - 38454177
Alignment:
| Q |
2 |
tttccaatttccagtataatc-tccccacctagagatataaaaactccaaatccatgtacaatgccagttaaccaagaaccaataaaaacatcgccaata |
100 |
Q |
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| T |
38453871 |
tttccaatttccagtgttaacatccccatttacagatctataaactccatatccatgtacaagtctatttgaccaacaaccatcaaaaacatcaccatca |
38453970 |
T |
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| Q |
101 |
tcccaactgacaatccctcttccatctggtagatcttttttccaatttccaatgtagatagttccatccttccaagtttgggtgccattaccatgacggc |
200 |
Q |
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| T |
38453971 |
ggccaactcatagtccctcttccatctcttttatcttttttccaatttccagtgtagatacctccatccttccaagtttgggtgccattaccatgacggc |
38454070 |
T |
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| Q |
201 |
aatcccgagagaagtcaccctcatactttgctcctaatggttgtgtgaatagtcgtcctttccctgtcatctctccatcaacaaaatcaccctcatatat |
300 |
Q |
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|||| | |||||| ||||||||||| |||| |||| |||| ||| ||||| ||||||||||| || ||| |||||||||| ||||||||||||||| |
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| T |
38454071 |
aatctccagagaactcaccctcataatttggtcctcatggatgtaagaataatcgtcctttccttgccatatctccatcaatccaatcaccctcatatac |
38454170 |
T |
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| Q |
301 |
tgatcca |
307 |
Q |
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||||||| |
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| T |
38454171 |
tgatcca |
38454177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 39 - 317
Target Start/End: Complemental strand, 39848325 - 39848050
Alignment:
| Q |
39 |
taaaaactccaaatccatgtacaatgccagttaaccaagaaccaataaaaacatcgccaatatcccaactgacaatccctcttccatctggtagatcttt |
138 |
Q |
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||||||||||| |||||| ||||| | || || ||||| ||||| |||||||||| ||| || || || | ||||||||||||||||| | ||| || |
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| T |
39848325 |
taaaaactccatatccatatacaaagtcatttgaccaacaaccattaaaaacatcaccattagccaaagtctcaatccctcttccatcttttttatcatt |
39848226 |
T |
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| Q |
139 |
tttccaatttccaatgtagatagttccatccttccaagtttgggtgccattaccatgacggcaatcccgagagaagtcaccctcatactttgctcctaat |
238 |
Q |
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|||||||||||||| |||| || ||||| ||| |||||||||||||||| |||||||||| || || | |||| |||||||||||||| ||||| || |
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| T |
39848225 |
tttccaatttccaacgtagctacctccattcttataagtttgggtgccattgccatgacggcgattcccaaagaattcaccctcatacttgtctcctgat |
39848126 |
T |
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| Q |
239 |
ggttgtgtgaatagtcgtcctttccctgtcatctctccatcaacaaaatcaccctcatatattgatccatctgaccatg |
317 |
Q |
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|| ||| |||| | ||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
39848125 |
ggctgtatgaaca---atcctttccctgtcttatctccatcaacccaatcacccacatatattgatccatctgaccatg |
39848050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 316
Target Start/End: Complemental strand, 38632485 - 38632344
Alignment:
| Q |
165 |
catccttccaagtttgggtgccattaccatgacggcaatcccgagagaagtcaccctcatactttgctcctaatggttgtgtgaatagtcgtcctttccc |
264 |
Q |
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|||||||||||||||||||| |||| |||||||| |||| || | |||| |||||||||||||| ||||| ||| | | |||| |||| | |
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| T |
38632485 |
catccttccaagtttgggtgtcattgccatgacgacaattcctaaagaattcaccctcatacttgtctcctgatgaatatatgaacagtcct-------- |
38632394 |
T |
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| Q |
265 |
tgtcatctctccatcaacaaaatcaccctcatatattgatccatctgaccat |
316 |
Q |
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| T |
38632393 |
--tcatctctccgtcaacccaatcaccctcatatgttgatccatctgaccat |
38632344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 317
Target Start/End: Original strand, 34534099 - 34534158
Alignment:
| Q |
258 |
ctttccctgtcatctctccatcaacaaaatcaccctcatatattgatccatctgaccatg |
317 |
Q |
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||||||||||||| | ||||||||| |||| ||||||||||||| |||||||||||||| |
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| T |
34534099 |
ctttccctgtcatttgtccatcaacccaatcgccctcatatattgttccatctgaccatg |
34534158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 36951436 - 36951394
Alignment:
| Q |
135 |
cttttttccaatttccaatgtagatagttccatccttccaagt |
177 |
Q |
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| T |
36951436 |
cttttttccaatttccaatatagatacttccatcattccaagt |
36951394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 7046115 - 7046304
Alignment:
| Q |
46 |
tccaaatccatgtacaatgccagttaaccaagaaccaataaaaacatcgccaatatcccaactgacaatccctcttccatctggtagatcttttttccaa |
145 |
Q |
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||||||| ||||||||| ||| ||||| ||| || | ||||| ||| ||| || ||||||| ||||||||| ||||||| | ||||||||||||| |
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| T |
7046115 |
tccaaattcatgtacaactccatttaactaaggactataaaaaaaatcaccattagcccaactcacaatcccttttccatccattttatcttttttccaa |
7046214 |
T |
|
| Q |
146 |
tttccaatgtagatagttccatccttccaagtttgggtgccattaccatgacgg-caatcccgagagaagtcaccctcatactttgctcc |
234 |
Q |
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||||||| |||| | ||||||| |||||||| |||||||| |||||||||||| ||| || |||||| ||||||||||| |||||||| |
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| T |
7046215 |
tttccaacgtagtcatttccatctttccaagtctgggtgcccttaccatgacggtaaattcctagagaattcaccctcatattttgctcc |
7046304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 7046884 - 7046945
Alignment:
| Q |
256 |
tcctttccctgtcatctctccatcaacaaaatcaccctcatatattgatccatctgaccatg |
317 |
Q |
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|||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| |
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| T |
7046884 |
tcctttccctgtcatctccccatcaatccaatctccctcatatattgatccatctgaccatg |
7046945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 32714137 - 32714077
Alignment:
| Q |
257 |
cctttccctgtcatctctccatcaacaaaatcaccctcatatattgatccatctgaccatg |
317 |
Q |
| |
|
|||||||||||| | | ||||||||| |||||||||||||||||| ||||| |||||||| |
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|
| T |
32714137 |
cctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttgaccatg |
32714077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 32716551 - 32716491
Alignment:
| Q |
257 |
cctttccctgtcatctctccatcaacaaaatcaccctcatatattgatccatctgaccatg |
317 |
Q |
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|||||||||||| | | ||||||||| |||||||||||||||||| ||||| |||||||| |
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| T |
32716551 |
cctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttgaccatg |
32716491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 2998271 - 2998208
Alignment:
| Q |
254 |
cgtcctttccctgtcatctctccatcaacaaaatcaccctcatatattgatccatctgaccatg |
317 |
Q |
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||||||||||||||| | | | ||||||| |||||||||||||||||| ||||| |||||||| |
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| T |
2998271 |
cgtcctttccctgtcctttgttcatcaacccaatcaccctcatatattgttccatttgaccatg |
2998208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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