View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5426_low_5 (Length: 311)
Name: NF5426_low_5
Description: NF5426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5426_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 51454926 - 51454641
Alignment:
| Q |
16 |
cattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacatacatataatgccaaactcaaacatataaaaatgaacag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51454926 |
cattaaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacatacatataatgccaaactcaaacatataaaaatgaacag |
51454827 |
T |
|
| Q |
116 |
agtgatgatcatgtaatgttaccttagcattactctccctgattttaagtttcttgtggacttgtggaacctcatttttggtggtttccttctccgcctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51454826 |
agtgatgatcatgtaatgttaccttagcattactctccctgattttaagtttcttgaggacttgtggaacctcatttttggtggtttccttctccacctt |
51454727 |
T |
|
| Q |
216 |
tatctttctgccgcgtctctttctcaccagttgaaatgatgaagagcccccggcatcattatcaccttcaccagcttcttcctttg |
301 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51454726 |
tctctttctgccgcgtctctttctcaccggttgaaatgatgaagagccgccggcatcattatcaccttcaccagcttcttcctttg |
51454641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 7996959 - 7996867
Alignment:
| Q |
18 |
ttaaggatccctcttcaatccactgttgattgaaaaac-agtaacagaaccacaattacat---acatataatgccaaactcaaacatataaa |
106 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| | |||||||| |||||||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
7996959 |
ttaaggattcctcttcaatccaccgttgattgaaaaacaattaacagaatgacaattacatgcaacatataattccaaactcaaacatgtaaa |
7996867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 30208492 - 30208553
Alignment:
| Q |
19 |
taaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacataca |
80 |
Q |
| |
|
|||||| || |||||||||| || |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30208492 |
taaggacccatcttcaatcccctattgattgagaaacagtaacagaaccacaattacataca |
30208553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 51496410 - 51496350
Alignment:
| Q |
20 |
aaggatccctcttcaatccactgttgattgaaaaacagtaacagaaccacaattacataca |
80 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
51496410 |
aaggattcctcttcgatccactgttgattgagaaacattaacagaatcacaattacataca |
51496350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 43160133 - 43160047
Alignment:
| Q |
177 |
ttgtggaacctcatttttggtggtttccttctccgcctttatctttctgccgcgtctctttctcaccagttgaaatgatgaagagcc |
263 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||| |||||||||||| | |||||||| || ||||||||||||||||||| |
|
|
| T |
43160133 |
ttgtggaacctcattttcggtggtttccttctccgattttctctttctgccgcatttctttctctccggttgaaatgatgaagagcc |
43160047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University