View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5426_low_6 (Length: 277)
Name: NF5426_low_6
Description: NF5426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5426_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 50237129 - 50237400
Alignment:
| Q |
1 |
ataaatatgattgttaatgtggtggttgaagatagtagctctatgactcagtttgaattagctttataaatttttaatatgcaaaaagaaatattctaag |
100 |
Q |
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| T |
50237129 |
ataaatatgattgttaatgtggtggttgaagatagtagctctatgactcagtttgaattagctttataaatttttaatatgcaaaaagaaatattctaag |
50237228 |
T |
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| Q |
101 |
catgtagagatgttgatgtatttacagagaaacaagcttaagaaaaagttgagaagcagaaactatattggggaaatactagttacgaaatcaaattaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50237229 |
catgtagagatgttgatgtatttacagagaaacaggcttaagaaaaagttgagaagcagaaactatattggggaaatactagttacgaaatcaaattaca |
50237328 |
T |
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| Q |
201 |
caaattagcatgaaacaaatttgcaccatcttattaatctccacctccctaaattcattacttcatctctct |
272 |
Q |
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| T |
50237329 |
caaattagcatgacacaaatttgcaccatcttattaatctccagctccctaaattcattactttatctctct |
50237400 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 17279284 - 17279370
Alignment:
| Q |
135 |
agcttaagaaaaagttgagaagcagaaactatattggggaaatactagttacgaaatcaaattacacaaattagcatgaaacaaatttg |
223 |
Q |
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||||| ||| |||||||||| ||||||| || ||| || ||||||| |||| |||||||| ||||||||||||||| ||||||| |||| |
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| T |
17279284 |
agcttcagataaagttgagatgcagaaagta-atttggaaaatacttgttatgaaatcaa-ttacacaaattagcaagaaacaattttg |
17279370 |
T |
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