View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427-Insertion-2 (Length: 760)
Name: NF5427-Insertion-2
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427-Insertion-2 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 8e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 6 - 187
Target Start/End: Complemental strand, 8786257 - 8786076
Alignment:
| Q |
6 |
cattaactacttattttacttagatatatgtagttcagtcatatttttaagttcattttccttaggaagctcctctcgttgcctcttcttagccgttgtg |
105 |
Q |
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| T |
8786257 |
cattaactacttattttacttagatatatgtagttcagtcatatttttaagttcattctccttaggaagctcctctcgttgcctcttcttagcccttgtg |
8786158 |
T |
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| Q |
106 |
ctctttagaggttgagtagtgacctcttgtcgagacgttcattaattgagttcacggacatgcaggggcggagtcaacaatt |
187 |
Q |
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| T |
8786157 |
ctctttagaggttgagtagtgacctcttgtcgagacgttcattaattgagttcacggacatgcagtggcggagtcaacaatt |
8786076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 481 - 547
Target Start/End: Complemental strand, 29315536 - 29315470
Alignment:
| Q |
481 |
ttctgcacacatgatatatttttcaaattaattgagttgatagtgataaaaacatattgatcaatag |
547 |
Q |
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| T |
29315536 |
ttctgcacacatgatatatttttcaaattgattgagttgattgtaatcaaaacatattgatcaatag |
29315470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 484 - 547
Target Start/End: Complemental strand, 11933937 - 11933874
Alignment:
| Q |
484 |
tgcacacatgatatatttttcaaattaattgagttgatagtgataaaaacatattgatcaatag |
547 |
Q |
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| T |
11933937 |
tgcacacatgatatatttttcaaattgattgagttgattgtaatcaaaatatattgatcaatag |
11933874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 481 - 547
Target Start/End: Complemental strand, 75493 - 75427
Alignment:
| Q |
481 |
ttctgcacacatgatatatttttcaaattaattgagttgatagtgataaaaacatattgatcaatag |
547 |
Q |
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| T |
75493 |
ttctgcacacatgatatatttttcaaattgattgagttgattgtaatcaaaacatattgatcaatag |
75427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 481 - 547
Target Start/End: Original strand, 28469547 - 28469613
Alignment:
| Q |
481 |
ttctgcacacatgatatatttttcaaattaattgagttgatagtgataaaaacatattgatcaatag |
547 |
Q |
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| T |
28469547 |
ttctgcacacatgatatatttttcaaattgattgagttgattgtaatcaaaacatattgatcaatag |
28469613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 481 - 547
Target Start/End: Complemental strand, 34734187 - 34734121
Alignment:
| Q |
481 |
ttctgcacacatgatatatttttcaaattaattgagttgatagtgataaaaacatattgatcaatag |
547 |
Q |
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| T |
34734187 |
ttctgcacacatgatatatttttcaaattgattgagttgattgtaatcaaaacatattgatcaatag |
34734121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 481 - 547
Target Start/End: Complemental strand, 24966172 - 24966106
Alignment:
| Q |
481 |
ttctgcacacatgatatatttttcaaattaattgagttgatagtgataaaaacatattgatcaatag |
547 |
Q |
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| T |
24966172 |
ttctgcacacatgatatatttttcaaattgattgagttgattgtaatcaaaacatattgatcaatag |
24966106 |
T |
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