View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5427-Insertion-3 (Length: 488)

Name: NF5427-Insertion-3
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5427-Insertion-3
NF5427-Insertion-3
[»] chr3 (38 HSPs)
chr3 (5-436)||(28150821-28151254)
chr3 (12-486)||(28003076-28003562)
chr3 (215-450)||(27979573-27979808)
chr3 (5-160)||(27919259-27919414)
chr3 (284-450)||(27919514-27919680)
chr3 (287-444)||(28036606-28036763)
chr3 (5-161)||(27979379-27979538)
chr3 (5-189)||(11419888-11420072)
chr3 (231-390)||(11420146-11420305)
chr3 (5-171)||(27459938-27460104)
chr3 (12-139)||(17745552-17745680)
chr3 (12-139)||(19046872-19047000)
chr3 (240-375)||(28149041-28149176)
chr3 (240-382)||(28184908-28185050)
chr3 (385-486)||(27459575-27459676)
chr3 (292-386)||(17745303-17745397)
chr3 (292-386)||(19046623-19046717)
chr3 (282-367)||(26114055-26114140)
chr3 (12-171)||(28036326-28036490)
chr3 (249-372)||(28509767-28509890)
chr3 (282-390)||(27459703-27459810)
chr3 (249-365)||(28480591-28480707)
chr3 (240-327)||(28134744-28134831)
chr3 (388-442)||(8539829-8539883)
chr3 (385-443)||(27390826-27390884)
chr3 (385-450)||(27377540-27377605)
chr3 (250-382)||(28082856-28082988)
chr3 (289-364)||(26202505-26202583)
chr3 (17-108)||(28184714-28184805)
chr3 (385-435)||(18025265-18025315)
chr3 (385-442)||(26179552-26179609)
chr3 (389-442)||(26235983-26236036)
chr3 (387-439)||(28005112-28005164)
chr3 (300-363)||(26128815-26128878)
chr3 (17-107)||(28160162-28160252)
chr3 (385-442)||(26129502-26129559)
chr3 (391-447)||(1366890-1366945)
chr3 (385-486)||(11420332-11420433)
[»] chr2 (4 HSPs)
chr2 (5-210)||(8020503-8020711)
chr2 (385-450)||(22392469-22392534)
chr2 (137-206)||(22965014-22965083)
chr2 (137-206)||(22399514-22399583)
[»] chr4 (1 HSPs)
chr4 (5-104)||(18010682-18010780)
[»] scaffold0257 (1 HSPs)
scaffold0257 (240-375)||(18461-18596)
[»] chr7 (1 HSPs)
chr7 (240-382)||(8692895-8693037)
[»] scaffold0043 (1 HSPs)
scaffold0043 (385-444)||(53883-53942)
[»] scaffold1142 (1 HSPs)
scaffold1142 (385-439)||(1332-1386)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 5 - 436
Target Start/End: Original strand, 28150821 - 28151254
Alignment:
Q  5 acaatcaccaatacaatgtatttgaaacaaacattatatttttgatgcagaaagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgt 104  Q
    ||||||| |||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28150821 acaatcatcaatgcaatgtatttgaatcaaacatt-tatttttgatgcaggaagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgt 28150919  T
Q  105 tcctcaacaagagatgccgtcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatatttctcttcaaacatat 204  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  28150920 tcctcaacaagagatgccatcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatat 28151019  T
Q  205 acatat---atactagtctagtaatgaaataattcatttgttcttactacaggagttgatgaatgaacaagaaatggagaaacaacgtccacttggacaa 301  Q
    ||||||   ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| || |||| ||    
T  28151020 acatattcaatattagtctagtaatgaaataattcatatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaa 28151119  T
Q  302 actgatgctactgtcaaaccttctcaagaaaataatgtaatatagtacaacctcattgtgcatatagagctaaaaaggaaacattaaaaatatgctgcaa 401  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| ||||| ||||||||||| |||||    
T  28151120 attgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcattgtgcatataaatctaaaaaagaaacgttaaaaatatgttgcaa 28151219  T
Q  402 ctaatttatattttcattttatgcaatcagttgga 436  Q
    |||||||| |||||||| |||||||||||||||||    
T  28151220 ctaatttacattttcatgttatgcaatcagttgga 28151254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 486
Target Start/End: Original strand, 28003076 - 28003562
Alignment:
Q  12 ccaatacaatgtatttgaaacaaacattatatttttgatgcagaaagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgttcctcaa 111  Q
    ||||| ||||| ||||||| |||||||| |||||||  || ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||     
T  28003076 ccaatccaatgcatttgaatcaaacattttattttttgtgtagaaagaaatggaacaaacactagagacagagcatgaatttgttgaaaatgtccctcat 28003175  T
Q  112 caagagatgccgtcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatatttctcttcaaacatatacatata 211  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | || |||||| ||||    
T  28003176 caagagatgccatcagtagcaataaaaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggataatcctctcccaatatatacgtata 28003275  T
Q  212 ---------tactagtctagtaatgaaataattcatttgttcttactacagga---gttgatgaatgaacaagaaatggagaaacaacgtccacttggac 299  Q
             || ||||||||||| ||| ||||| || ||||||||||||||||   ||||||||||||||||||||||||| || |||||| |||||||     
T  28003276 catattcaatattagtctagtaacgaactaattaatatgttcttactacaggaggagttgatgaatgaacaagaaatggagcaaaaacgtctacttggag 28003375  T
Q  300 aaactgatgctactgtcaaaccttctcaagaaaataatgtaatatagtacaacctcattgtgcatatagagctaaaaaggaaacattaaaaatatgctgc 399  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | ||||||| ||||| ||||||||||| |||    
T  28003376 aaactgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatataaatctaaaaaagaaacgttaaaaatatgttgc 28003475  T
Q  400 aactaatttatattttcattttatgcaatcagttggagggttcaatgtcagnnnnnnntgtagcatcaactttgtcgaccatttcag 486  Q
    || ||||||| |||||||| |||||||||||||||||||||||||  ||||       |||||||||||||||||| ||||||||||    
T  28003476 aagtaatttacattttcatgttatgcaatcagttggagggttcaacatcagaaaaaaatgtagcatcaactttgtccaccatttcag 28003562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 215 - 450
Target Start/End: Original strand, 27979573 - 27979808
Alignment:
Q  215 tagtctagtaatgaaataattcatttgttcttactacaggagttgatgaatgaacaagaaatggagaaacaacgtccacttggacaaactgatgctactg 314  Q
    |||||||||||   | |||||||| |||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||| |    
T  27979573 tagtctagtaaaagactaattcatatgttcttattacaggagttgatggatgaacaacaaatggagcaacaacgtccacttggagaaactgatgctaccg 27979672  T
Q  315 tcaaaccttctcaagaaaataatgtaatatagtacaacctcattgtgcatatagagctaaaaaggaaacattaaaaatatgctgcaactaatttatattt 414  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  27979673 tcaaaccttctccagaaaataatgtaatatagtaccacctcattgtgaatataaagctaaaaaagaaacattaaaaatatgttgcaactaatttacattt 27979772  T
Q  415 tcattttatgcaatcagttggagggttcaatgtcag 450  Q
    || | ||||||||||||||||||||||||| |||||    
T  27979773 tcttgttatgcaatcagttggagggttcaacgtcag 27979808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 27919259 - 27919414
Alignment:
Q  5 acaatcaccaatacaatgtatttgaaacaaacattatatttttgatgcagaaagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgt 104  Q
    |||||||||||||||||||||||||| |||||||| |||| ||  ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  27919259 acaatcaccaatacaatgtatttgaatcaaacattttattctttgtgcagaaagaaatagaacaaacactagagacagagcatgaatttgttgaaaatgt 27919358  T
Q  105 tcctcaacaagagatgccgtcagtagcaataataccaacaaattcaaaagtaattt 160  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||    
T  27919359 tcctcaacaaaagatgccatcagtagcaataataccaacaaattcagaagtaattt 27919414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 284 - 450
Target Start/End: Original strand, 27919514 - 27919680
Alignment:
Q  284 caacgtccacttggacaaactgatgctactgtcaaaccttctcaagaaaataatgtaatatagtacaacctcattgtgcatatagagctaaaaaggaaac 383  Q
    ||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||    
T  27919514 caacgtccacttggagaaattgatactaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcattgtgaatataaagctaaaaaagaaac 27919613  T
Q  384 attaaaaatatgctgcaactaatttatattttcattttatgcaatcagttggagggttcaatgtcag 450  Q
    |||||||||||| ||||||||||||| |||||| | ||||||||||||||||||||||||| |||||    
T  27919614 attaaaaatatgttgcaactaatttacattttcttgttatgcaatcagttggagggttcaacgtcag 27919680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 287 - 444
Target Start/End: Original strand, 28036606 - 28036763
Alignment:
Q  287 cgtccacttggacaaactgatgctactgtcaaaccttctcaagaaaataatgtaatatagtacaacctcattgtgcatatagagctaaaaaggaaacatt 386  Q
    |||||||||||| ||||||||||||| |||||| |||||| ||||||||| |||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  28036606 cgtccacttggagaaactgatgctaccgtcaaagcttctccagaaaataacgtaatatagtaccacctcattgtgcatataaagctaaaaatgaaacatt 28036705  T
Q  387 aaaaatatgctgcaactaatttatattttcattttatgcaatcagttggagggttcaa 444  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  28036706 aaaaatatgatgcaactaatttacattttcatgttatgcaatcagttggagggttcaa 28036763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 27979379 - 27979538
Alignment:
Q  5 acaatcaccaatacaatgtatttgaaacaaacattatatttttgatgcagaaagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgt 104  Q
    |||||||||||| ||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27979379 acaatcaccaatgcaatgtaattgaaacaaacattctattttttatgcagaaagaaatggaacaaacactagagacagagcatgaatttgttgaaaatgt 27979478  T
Q  105 tcctcaacaagagatgccgtcagtag---caataataccaacaaattcaaaagtaatttg 161  Q
    |||||||||||| ||||| |||||||   ||||| ||||||||||||| |||||||||||    
T  27979479 tcctcaacaagacatgccatcagtagcaacaatattaccaacaaattcgaaagtaatttg 27979538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 11419888 - 11420072
Alignment:
Q  5 acaatcaccaatacaatgtatttgaaacaaacattatatttttgatgcagaaagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgt 104  Q
    |||||||||||| |||||||||||||||||| |   |||||||  ||||||||||||| | ||||||||||| |||| |||||| |||||||||||||||    
T  11419888 acaatcaccaatgcaatgtatttgaaacaaaaaaattattttttgtgcagaaagaaattggacaaacactagtgacagagcatggatttgttgaaaatgt 11419987  T
Q  105 tcctcaacaagagatgccgtcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatatt 189  Q
    |||||  || ||||| || ||| ||||||||||||||||||||||| |||||||||  | |||| || |||||| |||| |||||    
T  11419988 tcctcgtcatgagattccatcaatagcaataataccaacaaattcagaagtaattttcaagccacgtcaaaatctcttgcatatt 11420072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 231 - 390
Target Start/End: Original strand, 11420146 - 11420305
Alignment:
Q  231 taattcatttgttcttactacaggagttgatgaatgaacaagaaatggagaaacaacgtccacttggacaaactgatgctactgtcaaaccttctcaaga 330  Q
    |||||||| ||||| || |||||||||||||||||||||||  ||||||| ||||||||||||||||  ||||||||||||| ||||||||||  || ||    
T  11420146 taattcatatgttcatattacaggagttgatgaatgaacaaccaatggagcaacaacgtccacttggtgaaactgatgctaccgtcaaacctttgcagga 11420245  T
Q  331 aaataatgtaatatagtacaacctcattgtgcatatagagctaaaaaggaaacattaaaa 390  Q
    |||||  |||||||||||| | ||||||||||||||| | ||||||| ||  ||||||||    
T  11420246 aaatacagtaatatagtaccatctcattgtgcatataaaactaaaaaagatgcattaaaa 11420305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 27460104 - 27459938
Alignment:
Q  5 acaatcaccaatacaatgtatttgaaacaaacattatatttttgatgcagaaagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgt 104  Q
    ||||||| |||  |||| |||||| | |||||||| |||||||  |||||||||||||||||||| |||| ||||||  ||||||||||| |||||||||    
T  27460104 acaatcatcaacccaatctatttggatcaaacattttattttttgtgcagaaagaaatggaacaaccacttgagacagggcatgaatttgatgaaaatgt 27460005  T
Q  105 tcctcaacaagagatgccgtcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgt 171  Q
    ||||||| | |||||||| |||||||||| |||||||||| | ||| ||||||| || |||||||||    
T  27460004 tcctcaaaaggagatgccatcagtagcaacaataccaacagactcagaagtaatgtgcaggccatgt 27459938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 17745680 - 17745552
Alignment:
Q  12 ccaatacaatgtatttgaaacaaacattatatttttga-tgcagaaagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgttcctca 110  Q
    ||||| ||||||||||||| |||||||| |||||||   ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||     
T  17745680 ccaatgcaatgtatttgaatcaaacattttatttttttgtgcagaaagaaatggaacaaacaatagagacagagcatgaatttgttgaaaatgttcctcg 17745581  T
Q  111 acaagagatgccgtcagtagcaataatac 139  Q
    || ||| ||||| ||||||||| ||||||    
T  17745580 acgagaaatgccatcagtagcagtaatac 17745552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 19047000 - 19046872
Alignment:
Q  12 ccaatacaatgtatttgaaacaaacattatatttttga-tgcagaaagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgttcctca 110  Q
    ||||| ||||||||||||| |||||||| |||||||   ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||     
T  19047000 ccaatgcaatgtatttgaatcaaacattttatttttttgtgcagaaagaaatggaacaaacaatagagacagagcatgaatttgttgaaaatgttcctcg 19046901  T
Q  111 acaagagatgccgtcagtagcaataatac 139  Q
    || ||| ||||| ||||||||| ||||||    
T  19046900 acgagaaatgccatcagtagcagtaatac 19046872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 375
Target Start/End: Original strand, 28149041 - 28149176
Alignment:
Q  240 tgttcttactacaggagttgatgaatgaacaagaaatggagaaacaacgtccacttggacaaactgatgctactgtcaaaccttctcaagaaaataatgt 339  Q
    |||||||  ||||||||||||||||||||| |  ||||||  |||||||| |||||||| |||||||| || | |||||||||||||| | |||| ||||    
T  28149041 tgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaactgatactgccgtcaaaccttctcaggtaaatcatgt 28149140  T
Q  340 aatatagtacaacctcattgtgcatatagagctaaa 375  Q
    ||||| |||| ||| ||||||||||||| |||||||    
T  28149141 aatatcgtaccaccgcattgtgcatataaagctaaa 28149176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 28184908 - 28185050
Alignment:
Q  240 tgttcttactacaggagttgatgaatgaacaagaaatggagaaacaacgtccacttggacaaactgatgctactgtcaaaccttctcaagaaaataatgt 339  Q
    |||||||  |||||||||||||||||||||||  ||||||| | ||||||| ||||||| || ||||| |||| |||||||||||||| | |||| ||||    
T  28184908 tgttcttgttacaggagttgatgaatgaacaatcaatggagcagcaacgtctacttggagaacctgatactaccgtcaaaccttctcaggtaaatcatgt 28185007  T
Q  340 aatatagtacaacctcattgtgcatatagagctaaaaaggaaa 382  Q
    ||| | |||| ||| | ||||||||||| ||||||||| ||||    
T  28185008 aatgtcgtaccaccgcgttgtgcatataaagctaaaaatgaaa 28185050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 385 - 486
Target Start/End: Complemental strand, 27459676 - 27459575
Alignment:
Q  385 ttaaaaatatgctgcaactaatttatattttcattttatgcaatcagttggagggttcaatgtcagnnnnnnntgtagcatcaactttgtcgaccatttc 484  Q
    ||||||||| | ||||||||||||| |||||||| |||||||| |||||||||||||||| |||||       |||||||||||||||||||||||||||    
T  27459676 ttaaaaataagttgcaactaatttacattttcatgttatgcaagcagttggagggttcaacgtcagaaaaaaatgtagcatcaactttgtcgaccatttc 27459577  T
Q  485 ag 486  Q
    ||    
T  27459576 ag 27459575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 386
Target Start/End: Complemental strand, 17745397 - 17745303
Alignment:
Q  292 acttggacaaactgatgctactgtcaaaccttctcaagaaaataatgtaatatagtacaacctcattgtgcatatagagctaaaaaggaaacatt 386  Q
    ||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||  |||||   ||||||| ||||||||    
T  17745397 acttggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatatagtaccacctcattgtttatataagactaaaaatgaaacatt 17745303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 386
Target Start/End: Complemental strand, 19046717 - 19046623
Alignment:
Q  292 acttggacaaactgatgctactgtcaaaccttctcaagaaaataatgtaatatagtacaacctcattgtgcatatagagctaaaaaggaaacatt 386  Q
    ||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||  |||||   ||||||| ||||||||    
T  19046717 acttggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatatagtaccacctcattgtttatataagactaaaaatgaaacatt 19046623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 282 - 367
Target Start/End: Complemental strand, 26114140 - 26114055
Alignment:
Q  282 aacaacgtccacttggacaaactgatgctactgtcaaaccttctcaagaaaataatgtaatatagtacaacctcattgtgcatata 367  Q
    |||||| |||||||||| |||||||| ||||  ||||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  26114140 aacaacatccacttggagaaactgatactaccatcaaaccttctcaagaagataatgtaatatagtaccatctcattgtgcatata 26114055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 28036326 - 28036490
Alignment:
Q  12 ccaatacaatgtatttgaaacaaacattatatttttgatgcagaaagaaatgg-----aacaaacactagagacaaagcatgaatttgttgaaaatgttc 106  Q
    ||||| ||||| ||||||  |||||||| |||||||| || |||| |||||||     || |||||||||||||| |||||||||||||||||||| | |    
T  28036326 ccaatgcaatgcatttgagtcaaacattttatttttggtgtagaatgaaatggcatggaagaaacactagagacagagcatgaatttgttgaaaatttcc 28036425  T
Q  107 ctcaacaagagatgccgtcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgt 171  Q
    |||   |||||||||| |||||||||| || |||||||| |||| |||||| ||  |||||||||    
T  28036426 ctcgtgaagagatgccatcagtagcaaaaaaaccaacaagttcagaagtaagttacaggccatgt 28036490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 372
Target Start/End: Complemental strand, 28509890 - 28509767
Alignment:
Q  249 tacaggagttgatgaatgaacaagaaatggagaaacaacgtccacttggacaaactgatgctactgtcaaaccttctcaagaaaataatgtaatatagta 348  Q
    |||||||||||||||||||||||   |||||| ||||||||| ||||||| || | ||| || | |||||||||||||| | |||| | ||||||| |||    
T  28509890 tacaggagttgatgaatgaacaatcgatggagcaacaacgtctacttggagaagccgattctgccgtcaaaccttctcaggtaaatcaagtaatatcgta 28509791  T
Q  349 caacctcattgtgcatatagagct 372  Q
    | ||| ||||||||||||| ||||    
T  28509790 ccaccgcattgtgcatataaagct 28509767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 390
Target Start/End: Complemental strand, 27459810 - 27459703
Alignment:
Q  282 aacaacgtccacttggacaaactgatgctactgtcaaaccttctcaagaaaataatgtaatatagtacaacctcattgtgcatatagagctaaaaaggaa 381  Q
    ||||| ||||||||| | ||||||||||||  |||||||||||||| ||||||||||||||||| ||| |||| |||||| || || || |||| | |||    
T  27459810 aacaatgtccacttgcagaaactgatgctagcgtcaaaccttctcaggaaaataatgtaatataataccaccttattgtgtat-taaagataaataagaa 27459712  T
Q  382 acattaaaa 390  Q
    |||||||||    
T  27459711 acattaaaa 27459703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 365
Target Start/End: Complemental strand, 28480707 - 28480591
Alignment:
Q  249 tacaggagttgatgaatgaacaagaaatggagaaacaacgtccacttggacaaactgatgctactgtcaaaccttctcaagaaaataatgtaatatagta 348  Q
    ||||||||||||||||| |||||   |||||| ||||||||| ||||||| || | ||| || | |||||||||||||| | |||| ||||||||| |||    
T  28480707 tacaggagttgatgaatcaacaatctatggagcaacaacgtctacttggagaagccgatactcccgtcaaaccttctcaggtaaatcatgtaatatcgta 28480608  T
Q  349 caacctcattgtgcata 365  Q
    | ||| |||||||||||    
T  28480607 ccaccgcattgtgcata 28480591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 240 - 327
Target Start/End: Original strand, 28134744 - 28134831
Alignment:
Q  240 tgttcttactacaggagttgatgaatgaacaagaaatggagaaacaacgtccacttggacaaactgatgctactgtcaaaccttctca 327  Q
    |||||||  |||||||||||||||||||||||  ||||||  |||||||| |||||||| |||||||| || | ||||||||||||||    
T  28134744 tgttcttgttacaggagttgatgaatgaacaatcaatggaccaacaacgttcacttggagaaactgatacttccgtcaaaccttctca 28134831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 388 - 442
Target Start/End: Complemental strand, 8539883 - 8539829
Alignment:
Q  388 aaaatatgctgcaactaatttatattttcattttatgcaatcagttggagggttc 442  Q
    ||||||||  |||||||||||| ||||||||||||||||||||||||||||||||    
T  8539883 aaaatatgacgcaactaatttacattttcattttatgcaatcagttggagggttc 8539829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 443
Target Start/End: Complemental strand, 27390884 - 27390826
Alignment:
Q  385 ttaaaaatatgctgcaactaatttatattttcattttatgcaatcagttggagggttca 443  Q
    |||| |||||||||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  27390884 ttaataatatgctgcaactaatttaaattttcatgttatgcaattagttggagggttca 27390826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 27377540 - 27377605
Alignment:
Q  385 ttaaaaatatgctgcaactaatttatattttcattttatgcaatcagttggagggttcaatgtcag 450  Q
    |||||||||| |||||||||||||||||||||||  |||||||| ||||||||| ||||| |||||    
T  27377540 ttaaaaatattctgcaactaatttatattttcatgctatgcaattagttggaggattcaacgtcag 27377605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 250 - 382
Target Start/End: Original strand, 28082856 - 28082988
Alignment:
Q  250 acaggagttgatgaatgaacaagaaatggagaaacaacgtccacttggacaaactgatgctactgtcaaaccttctcaagaaaataatgtaatatagtac 349  Q
    ||||||||||||||||||||||  ||||||  ||||||||| | ||||| |||||||| || | |||||||||| ||| | |||| ||| |||||  |||    
T  28082856 acaggagttgatgaatgaacaaacaatggaccaacaacgtctagttggagaaactgatactgccgtcaaaccttttcaggtaaatcatgcaatatcatac 28082955  T
Q  350 aacctcattgtgcatatagagctaaaaaggaaa 382  Q
     |   ||||||||||||| ||||||||| ||||    
T  28082956 caatacattgtgcatataaagctaaaaatgaaa 28082988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 26202583 - 26202505
Alignment:
Q  289 tccacttggacaaactgatgctactgtcaaaccttctcaagaaaataatgt---aatatagtacaacctcattgtgcat 364  Q
    ||||| |||| |||||||| ||||  ||||||||||||||||| |||||||   |||||||||||| ||||||||||||    
T  26202583 tccacctggagaaactgatactaccatcaaaccttctcaagaatataatgtaataatatagtacaatctcattgtgcat 26202505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 28184714 - 28184805
Alignment:
Q  17 acaatgtatttgaaacaaacattatatttttgatgcagaaagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgttcct 108  Q
    |||||||||||||  |||||||  |||||||  |||||||| |||   ||||||||| ||||||| |||||||| |||| ||||||||||||    
T  28184714 acaatgtatttgattcaaacatgctattttttgtgcagaaaaaaacaaaacaaacaccagagacagagcatgaacttgtggaaaatgttcct 28184805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 18025315 - 18025265
Alignment:
Q  385 ttaaaaatatgctgcaactaatttatattttcattttatgcaatcagttgg 435  Q
    |||||| |||||||||||||||||| ||||||||  |||||||||||||||    
T  18025315 ttaaaactatgctgcaactaatttacattttcatgctatgcaatcagttgg 18025265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 26179609 - 26179552
Alignment:
Q  385 ttaaaaatatgctgcaactaatttatattttcattttatgcaatcagttggagggttc 442  Q
    ||||||||||||||||||||| ||| ||||||||   ||||||| |||||||||||||    
T  26179609 ttaaaaatatgctgcaactaacttacattttcatgcaatgcaattagttggagggttc 26179552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 442
Target Start/End: Complemental strand, 26236036 - 26235983
Alignment:
Q  389 aaatatgctgcaactaatttatattttcattttatgcaatcagttggagggttc 442  Q
    ||||||||||||||||||||| ||||||||   ||||||| |||||||||||||    
T  26236036 aaatatgctgcaactaatttacattttcatgcaatgcaattagttggagggttc 26235983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 28005112 - 28005164
Alignment:
Q  387 aaaaatatgctgcaactaatttatattttcattttatgcaatcagttggaggg 439  Q
    |||||| |||||||||||||||| ||||||||  |||||||| ||||||||||    
T  28005112 aaaaatctgctgcaactaatttacattttcatgctatgcaattagttggaggg 28005164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 26128878 - 26128815
Alignment:
Q  300 aaactgatgctactgtcaaaccttctcaagaaaataatgtaatatagtacaacctcattgtgca 363  Q
    |||||||| ||||  ||||||||||||| ||| ||||||||||||||||| | ||||| |||||    
T  26128878 aaactgatactaccatcaaaccttctcaggaagataatgtaatatagtaccatctcatcgtgca 26128815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 28160162 - 28160252
Alignment:
Q  17 acaatgtatttgaaacaaacattatatttttgatgcagaaagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgttcc 107  Q
    |||||||||||||  ||| |||  |||||||  |||||||| ||||| |||  |||| ||||||| |||||||| |||| |||||||||||    
T  28160162 acaatgtatttgattcaaccatgctattttttgtgcagaaaaaaatgaaacggacaccagagacagagcatgaacttgtggaaaatgttcc 28160252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 26129559 - 26129502
Alignment:
Q  385 ttaaaaatatgctgcaactaatttatattttcattttatgcaatcagttggagggttc 442  Q
    ||||||||||||||||||||| ||| ||||||||  |||||| | || ||||||||||    
T  26129559 ttaaaaatatgctgcaactaaattacattttcatgctatgcatttagctggagggttc 26129502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 447
Target Start/End: Complemental strand, 1366945 - 1366890
Alignment:
Q  391 atatgctgcaactaatttatattttcattttatgcaatcagttggagggttcaatgt 447  Q
    |||| |||||||||||||| ||||||||  |||| ||| ||||||||||||||||||    
T  1366945 atattctgcaactaatttacattttcatgctatg-aattagttggagggttcaatgt 1366890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 486
Target Start/End: Original strand, 11420332 - 11420433
Alignment:
Q  385 ttaaaaatatgctgcaactaatttatattttcattttatgcaatcagttggagggttcaatgtcagnnnnnnntgtagcatcaactttgtcgaccatttc 484  Q
    ||||||||||| ||||||||||||| ||||||||  | |  |||||||| | |||||||| |||||       ||||||||||||| | || ||||||||    
T  11420332 ttaaaaatatgttgcaactaatttacattttcatcatgttaaatcagttcgtgggttcaacgtcagaaaaaaatgtagcatcaactctttccaccatttc 11420431  T
Q  485 ag 486  Q
    ||    
T  11420432 ag 11420433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 7e-87; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 8020503 - 8020711
Alignment:
Q  5 acaatcaccaatacaatgtatttgaaacaaacattatatttttgatgcagaaagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgt 104  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  8020503 acaatcaccaatacaatgtatttgaaacaaacattttatttttgatgcagaaagaaatggaacaaacactagagacagagcatgaatttgttgaaattgt 8020602  T
Q  105 tcctcaacaagagatgccgtcagtag---caataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatatttctcttcaaaca 201  Q
    |||||||||||||||||| |||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |    
T  8020603 tcctcaacaagagatgccatcagtagcaacaatattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaata 8020702  T
Q  202 tatacatat 210  Q
    |||||||||    
T  8020703 tatacatat 8020711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 22392469 - 22392534
Alignment:
Q  385 ttaaaaatatgctgcaactaatttatattttcattttatgcaatcagttggagggttcaatgtcag 450  Q
    |||||||||| |||||||||||||| ||||||||  || ||||||||||||||||||||| |||||    
T  22392469 ttaaaaatattctgcaactaatttacattttcatgctacgcaatcagttggagggttcaacgtcag 22392534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 22965014 - 22965083
Alignment:
Q  137 taccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatatttctcttcaaacatatac 206  Q
    |||||||||||||| ||||||| |||||||| ||| ||| |||||| |||||| |||| |||| ||||||    
T  22965014 taccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttcgatattcctctccaaatatatac 22965083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 22399514 - 22399583
Alignment:
Q  137 taccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatatttctcttcaaacatatac 206  Q
    |||||||||||||| ||||||| |||||||| ||| ||| ||||||  ||||| |||| |||| ||||||    
T  22399514 taccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttctatattcctctccaaatatatac 22399583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 18010682 - 18010780
Alignment:
Q  5 acaatcaccaatacaatgtatttgaaacaaacattatatttttgatgcagaaagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgt 104  Q
    |||||||||||| ||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  18010682 acaatcaccaatgcaatgtaattgaaacaaacattctattttttatgcagaaagaaatggaacaaacactagagacagagcatgaatttg-tgaaaatgt 18010780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 375
Target Start/End: Original strand, 18461 - 18596
Alignment:
Q  240 tgttcttactacaggagttgatgaatgaacaagaaatggagaaacaacgtccacttggacaaactgatgctactgtcaaaccttctcaagaaaataatgt 339  Q
    |||||||  |||||||||||||||||||| ||   ||| || ||||||||||||||||| ||||||||  | | |||||||||||||| | |||| ||||    
T  18461 tgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgt 18560  T
Q  340 aatatagtacaacctcattgtgcatatagagctaaa 375  Q
    |||||  ||||||| ||||||||||||| |||||||    
T  18561 aatatcctacaaccgcattgtgcatataaagctaaa 18596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 8693037 - 8692895
Alignment:
Q  240 tgttcttactacaggagttgatgaatgaacaagaaatggagaaacaacgtccacttggacaaactgatgctactgtcaaaccttctcaagaaaataatgt 339  Q
    |||||||  ||||||| |||||||||||||||   ||||| |||||||||||||||||| ||||||||  | | | |||||||||||| | |||| ||||    
T  8693037 tgttcttgttacaggaattgatgaatgaacaatcgatggacaaacaacgtccacttggagaaactgatattgccggcaaaccttctcaggtaaatcatgt 8692938  T
Q  340 aatatagtacaacctcattgtgcatatagagctaaaaaggaaa 382  Q
    ||||| |||| ||  ||||||||||||| ||||||||| ||||    
T  8692937 aatatcgtaccactgcattgtgcatataaagctaaaaaagaaa 8692895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 53942 - 53883
Alignment:
Q  385 ttaaaaatatgctgcaactaatttatattttcattttatgcaatcagttggagggttcaa 444  Q
    ||||||||||  ||||||||||||| ||||||||  ||||| ||||||||||||||||||    
T  53942 ttaaaaatattgtgcaactaatttacattttcatgctatgctatcagttggagggttcaa 53883  T

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Target: scaffold1142 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 1332 - 1386
Alignment:
Q  385 ttaaaaatatgctgcaactaatttatattttcattttatgcaatcagttggaggg 439  Q
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T  1332 ttaaaaatatgctgcaactaatttacatttttatggtatgcaattagttggaggg 1386  T

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