View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5427-Insertion-5 (Length: 279)

Name: NF5427-Insertion-5
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5427-Insertion-5
NF5427-Insertion-5
[»] chr1 (1 HSPs)
chr1 (5-279)||(28472327-28472601)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 5 - 279
Target Start/End: Complemental strand, 28472601 - 28472327
Alignment:
Q  5 acaatatcattgttgtgtcccgccctatctcatgtatttgcttaaatatctcacttctcttaccattttatatttccttagattcaattcactatatttt 104  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28472601 acaatatcattgttgtgttctgccctatctcatgtatttgcttaaatatctcacttctcttaccattttatatttccttagattcaattcactatatttt 28472502  T
Q  105 ctataattcagttacaatcttttcttacatctcttcctatataaacaagaaacaactcaaaaagtttccatggattccaattcaaagtgctcaagatttc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28472501 ctataattcagttacaatcttttcttacatctcttcctatataaacaagaaacaactcaaaaagtttccatggattccaattcaaagtgctcaagatttc 28472402  T
Q  205 aaatccctcttggatcaatggcaagaagtatgtttttcaaagcattacttcttgcctctgctatttccatcgttt 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28472401 aaatccctcttggatcaatggcaagaagtatgtttttcaaagcattacttcttgcctctgctatttccatcgttt 28472327  T

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