View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427-Insertion-9 (Length: 75)
Name: NF5427-Insertion-9
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427-Insertion-9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 64; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 3207365 - 3207432
Alignment:
| Q |
8 |
caataaagttatcacctctattctctttatcttcgggtataaaatcaacccaatatgttaccttttgc |
75 |
Q |
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| T |
3207365 |
caataaagttatcacctctattctctttatcttcaggtataaaatcaacccaatatgttaccttttgc |
3207432 |
T |
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Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 3201391 - 3201458
Alignment:
| Q |
8 |
caataaagttatcacctctattctctttatcttcgggtataaaatcaacccaatatgttaccttttgc |
75 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
3201391 |
caataaagttatcacctctattctctttgtcttcaggtataaaatcaacccaatatgttaccttttgc |
3201458 |
T |
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