View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_high_17 (Length: 252)
Name: NF5427_high_17
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 27005459 - 27005237
Alignment:
| Q |
18 |
aggtttttggtggaaatgtggtgtttcagtcttttgttgttcctgattattaactagttgttgctccctgtgttttgggggctctccaacaagtggtact |
117 |
Q |
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| T |
27005459 |
aggtttttggtggaaatgtggtgtttcagtcttttgttgttcctgattattaacttgttgttgctccctgtgtttcgggggctctccaacaagtggtacc |
27005360 |
T |
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| Q |
118 |
agagcaaagttaacttgatgggagagtagatctttatattaagtttttcttatagtggagtcattggttagtaatggaagtgaaagtagacattggatat |
217 |
Q |
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| T |
27005359 |
agagccaagttaacttgatgggagagtagatctttatattaagtttttcttatagtggagtcattggttagtaatggaagtgaaagtagacattggatat |
27005260 |
T |
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| Q |
218 |
accaatcatctcacttatatttt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
27005259 |
accaatcatctcacttatatttt |
27005237 |
T |
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