View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5427_high_18 (Length: 252)
Name: NF5427_high_18
Description: NF5427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5427_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 40467609 - 40467372
Alignment:
| Q |
15 |
acttgaagcattgactgacctattatattcatcccctcctattaaaatttgctcaagaattgctatggcggcagctttagggtctattgctaactgaaaa |
114 |
Q |
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| T |
40467609 |
acttgaagcattgactgacctattatattcatcccctcctattaaaatttgctcaagaattgctatggcggcagctttagggtctattgctaactgaaaa |
40467510 |
T |
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| Q |
115 |
tcatctatatcctcacttttgttctggatcacttggataagagagggtattagttcatgttctgaaagctgagcaaaaactggccttagttggtaaataa |
214 |
Q |
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| T |
40467509 |
tcatctatatcctcacttttgttctggatcacttggataagagagggtattagttcatgttctgaaagctgagcaaaaactggccttagttggtaaatga |
40467410 |
T |
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| Q |
215 |
gtagtgcagcctcggccaaaccattcttaagtagcata |
252 |
Q |
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| T |
40467409 |
gtagtgcagcctcggccaaaccattcttaagtagcata |
40467372 |
T |
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